Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YFL
DownloadVisualize
BU of 4yfl by Molmil
Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 1B2530 in complex with HIV-1 clade A/E 93TH057 gp120
分子名称: 1B2530 Light chain, 1B2530 heavy chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Acharya, P, Zhou, T, Moquin, S, Kwong, P.D.
登録日2015-02-25
公開日2015-06-03
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.387 Å)
主引用文献Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Cell, 161, 2015
7YL6
DownloadVisualize
BU of 7yl6 by Molmil
Cell surface protein YwfG protein complexed with alpha-1,2-mannobiose
分子名称: CALCIUM ION, GRAM_POS_ANCHORING domain-containing protein, SULFATE ION, ...
著者Tsuchiya, W, Fujimoto, Z, Suzuki, C.
登録日2022-07-25
公開日2023-06-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Cell-surface protein YwfG of Lactococcus lactis binds to alpha-1,2-linked mannose.
Plos One, 18, 2023
6H0H
DownloadVisualize
BU of 6h0h by Molmil
The ABC transporter associated binding protein from B. animalis subsp. lactis Bl-04 in complex with beta-1,6-galactobiose
分子名称: DI(HYDROXYETHYL)ETHER, Probable solute binding protein of ABC transporter system for sugars, TETRAETHYLENE GLYCOL, ...
著者Fredslund, F, Lo Leggio, L.
登録日2018-07-09
公開日2019-06-19
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Substrate preference of an ABC importer corresponds to selective growth on beta-(1,6)-galactosides inBifidobacterium animalissubsp.lactis.
J.Biol.Chem., 294, 2019
6ANL
DownloadVisualize
BU of 6anl by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[1,2-b]pyridazine-based p38 MAP Kinase Inhibitors
分子名称: Mitogen-activated protein kinase 14, TAK-715
著者Snell, G.P, Okada, K, Bragstad, K, Sang, B.-C.
登録日2017-08-14
公開日2018-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-based design, synthesis, and biological evaluation of imidazo[1,2-b]pyridazine-based p38 MAP kinase inhibitors.
Bioorg. Med. Chem., 26, 2018
8RFG
DownloadVisualize
BU of 8rfg by Molmil
CgsiGP3 sample in nanodisc
分子名称: Cyclic beta 1-2 glucan synthetase, beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose, beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose, ...
著者Sedzicki, J, Ni, D, Lehmann, F, Stahlberg, H, Dehio, C.
登録日2023-12-12
公開日2024-03-20
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Structure-function analysis of the cyclic beta-1,2-glucan synthase from Agrobacterium tumefaciens.
Nat Commun, 15, 2024
4YWG
DownloadVisualize
BU of 4ywg by Molmil
Crystal structure of 830A in complex with V1V2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of anti-HIV-1 gp120 V1V2 antibody 830A, Light chain of anti-HIV-1 gp120 V1V2 antibody 830A, ...
著者Pan, R, Kong, X.
登録日2015-03-20
公開日2015-07-15
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.998 Å)
主引用文献The V1V2 Region of HIV-1 gp120 Forms a Five-Stranded Beta Barrel.
J.Virol., 89, 2015
3MB5
DownloadVisualize
BU of 3mb5 by Molmil
Crystal structure of P. abyssi tRNA m1A58 methyltransferase in complex with S-adenosyl-L-methionine
分子名称: 1,2-ETHANEDIOL, ACETATE ION, S-ADENOSYLMETHIONINE, ...
著者Guelorget, A, Golinelli-Pimpaneau, B.
登録日2010-03-25
公開日2010-05-12
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Insights into the hyperthermostability and unusual region-specificity of archaeal Pyrococcus abyssi tRNA m1A57/58 methyltransferase.
Nucleic Acids Res., 38, 2010
7RAI
DownloadVisualize
BU of 7rai by Molmil
Cryo-EM structure of M4008_N1 Fab in complex with BG505 DS-SOSIP.664 Env trimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
著者Chan, K.-W, Kong, X.P.
登録日2021-07-01
公開日2021-11-17
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.24 Å)
主引用文献A site of vulnerability at V3 crown defined by HIV-1 bNAb M4008_N1.
Nat Commun, 12, 2021
6B97
DownloadVisualize
BU of 6b97 by Molmil
Crystal structure of PDE2 in complex with complex 9
分子名称: 1,2-ETHANEDIOL, 6-chloro-1-methyl-N-{(1R)-1-[4-(trifluoromethyl)phenyl]ethyl}-1H-pyrazolo[3,4-d]pyrimidin-4-amine, MAGNESIUM ION, ...
著者Lu, J.
登録日2017-10-10
公開日2017-11-22
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献The identification of a novel lead class for phosphodiesterase 2 inhibition by fragment-based drug design.
Bioorg. Med. Chem. Lett., 27, 2017
8P67
DownloadVisualize
BU of 8p67 by Molmil
Crystal structure of Thermothelomyces thermophila (double mutant EE) in complex with aldotetrauronic acid
分子名称: 1,2-ETHANEDIOL, 4-O-methyl-alpha-D-glucopyranuronic acid-(1-2)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, GH30 family xylanase, ...
著者Dimarogona, M, Pentari, C, Kosinas, C, Topakas, E.
登録日2023-05-25
公開日2024-05-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Structural and molecular insights into a bifunctional glycoside hydrolase 30 xylanase specific to glucuronoxylan.
Biotechnol.Bioeng., 121, 2024
6LYG
DownloadVisualize
BU of 6lyg by Molmil
Cryo-EM structure of the calcium homeostasis modulator 1 channel
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Calcium homeostasis modulator 1
著者Ren, Y, Yang, X, Shen, Y.
登録日2020-02-14
公開日2020-10-07
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structure of the calcium homeostasis modulator 1 channel.
Sci Adv, 6, 2020
4CHB
DownloadVisualize
BU of 4chb by Molmil
Crystal structure of the human KLHL2 Kelch domain in complex with a WNK4 peptide
分子名称: 1,2-ETHANEDIOL, DODECAETHYLENE GLYCOL, KELCH-LIKE PROTEIN 2, ...
著者Sorrell, F.J, Schumacher, F.R, Kurz, T, Alessi, D.R, Newman, J, Cooper, C.D.O, Canning, P, Kopec, J, Williams, E, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.
登録日2013-11-29
公開日2014-01-08
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Structural and Biochemical Characterisation of the Klhl3-Wnk Kinase Interaction Important in Blood Pressure Regulation.
Biochem.J., 460, 2014
5EM5
DownloadVisualize
BU of 5em5 by Molmil
EGFR kinase domain mutant "TMLR" with pyridone compound 2: 4-[2-(4-chlorophenyl)ethylamino]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]-2-oxidanylidene-1~{H}-pyridine-3-carboxamide
分子名称: 4-[2-(4-chlorophenyl)ethylamino]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]-2-oxidanylidene-1~{H}-pyridine-3-carboxamide, Epidermal growth factor receptor
著者Eigenbrot, C, Yu, C.
登録日2015-11-05
公開日2015-12-30
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Pyridones as Highly Selective, Noncovalent Inhibitors of T790M Double Mutants of EGFR.
Acs Med.Chem.Lett., 7, 2016
1M33
DownloadVisualize
BU of 1m33 by Molmil
Crystal Structure of BioH at 1.7 A
分子名称: 1,2-ETHANEDIOL, 3-HYDROXY-PROPANOIC ACID, BioH protein
著者Sanishvili, R, Savchenko, A, Skarina, T, Edwards, A, Joachimiak, A, Yakunin, A, Midwest Center for Structural Genomics (MCSG)
登録日2002-06-26
公開日2003-01-21
最終更新日2024-12-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Integrating structure, bioinformatics, and enzymology to discover function: BioH, a new carboxylesterase from Escherichia coli.
J.Biol.Chem., 278, 2003
8J6T
DownloadVisualize
BU of 8j6t by Molmil
Cryo-EM structure of the double CAF-1 bound right-handed Di-tetrasome
分子名称: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ...
著者Liu, C.P, Yu, Z.Y, Xu, R.M.
登録日2023-04-26
公開日2023-08-16
最終更新日2023-09-06
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1.
Science, 381, 2023
7DKI
DownloadVisualize
BU of 7dki by Molmil
Silk worm FKBP, isoform-1
分子名称: GLYCEROL, Peptidylprolyl isomerase
著者Yuchi, Z, Nayak, B.C.
登録日2020-11-24
公開日2022-02-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Silk worm FKBP, isoform-1
To Be Published
3MOS
DownloadVisualize
BU of 3mos by Molmil
The structure of human Transketolase
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, SODIUM ION, ...
著者Parthier, C, Tittmann, K.
登録日2010-04-23
公開日2010-07-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The crystal structure of human transketolase and new insights into its mode of action.
J.Biol.Chem., 285, 2010
5Z1N
DownloadVisualize
BU of 5z1n by Molmil
Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from Dictyostelium discoideum
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, G-protein interacting protein 1, ...
著者Miyagawa, T, Koteishi, H, Kamimura, Y, Miyanaga, Y, Takeshita, K, Nakagawa, A, Ueda, M.
登録日2017-12-27
公開日2018-10-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.949 Å)
主引用文献Structural basis of Gip1 for cytosolic sequestration of G protein in wide-range chemotaxis
Nat Commun, 9, 2018
6DHN
DownloadVisualize
BU of 6dhn by Molmil
Bovine glutamate dehydrogenase complexed with Eu3+
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, GLUTAMIC ACID, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Smith, T.J.
登録日2018-05-20
公開日2018-07-25
最終更新日2024-12-25
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献A novel mechanism of V-type zinc inhibition of glutamate dehydrogenase results from disruption of subunit interactions necessary for efficient catalysis.
FEBS J., 278, 2011
7JFZ
DownloadVisualize
BU of 7jfz by Molmil
Structure of Urocanate hydratase from Legionella pneumophila bound to NAD
分子名称: 1,2-ETHANEDIOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SUCCINIC ACID, ...
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2020-07-17
公開日2020-10-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of Urocanate hydratase from Legionella pneumophila bound to NAD
To Be Published
6DIO
DownloadVisualize
BU of 6dio by Molmil
Structure of class II HMG-CoA reductase from Delftia acidovorans with NAD bound
分子名称: 1,2-ETHANEDIOL, 3-hydroxy-3-methylglutaryl coenzyme A reductase, CITRIC ACID, ...
著者Ragwan, E.R, Arai, E, Kung, Y.
登録日2018-05-23
公開日2018-09-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献New Crystallographic Snapshots of Large Domain Movements in Bacterial 3-Hydroxy-3-methylglutaryl Coenzyme A Reductase.
Biochemistry, 57, 2018
5Z39
DownloadVisualize
BU of 5z39 by Molmil
Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from Dictyostelium discoideum form II
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, G-protein interacting protein 1, ...
著者Miyagawa, T, Koteishi, H, Kamimura, Y, Miyanaga, Y, Takeshita, K, Nakagawa, A, Ueda, M.
登録日2018-01-05
公開日2018-10-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献Structural basis of Gip1 for cytosolic sequestration of G protein in wide-range chemotaxis
Nat Commun, 9, 2018
5EIJ
DownloadVisualize
BU of 5eij by Molmil
Carbonic Anhydrase II in complex with Sulfonamide Inhibitor
分子名称: 1-(3-iodanylphenyl)-3-(4-sulfamoylphenyl)thiourea, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
著者Lomelino, C.L, Mahon, B.P, McKenna, R.
登録日2015-10-29
公開日2016-11-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Kinetic and X-ray crystallographic investigations on carbonic anhydrase isoforms I, II, IX and XII of a thioureido analog of SLC-0111.
Bioorg. Med. Chem., 24, 2016
5K36
DownloadVisualize
BU of 5k36 by Molmil
Structure of an eleven component nuclear RNA exosome complex bound to RNA
分子名称: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ...
著者Lima, C.D, Zinder, J.C.
登録日2016-05-19
公開日2016-11-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Nuclear RNA Exosome at 3.1 angstrom Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3.
Mol.Cell, 64, 2016
6U2K
DownloadVisualize
BU of 6u2k by Molmil
EM structure of MPEG-1 (L425K, alpha conformation) soluble pre-pore complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Macrophage-expressed gene 1 protein
著者Pang, S.S, Bayly-Jones, C.
登録日2019-08-20
公開日2019-09-25
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献The cryo-EM structure of the acid activatable pore-forming immune effector Macrophage-expressed gene 1.
Nat Commun, 10, 2019

243083

件を2025-10-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon