PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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1FYI	11-MER DNA DUPLEX CONTAINING A 2'-DEOXYARISTEROMYCIN 8-OXO-GUANINE BASE PAIR; 分子名称: 5'-D(*CP*AP*GP*TP*GP*(2AR)P*GP*TP*CP*AP*C)-3', 5'-D(*GP*TP*GP*AP*CP*(8OG)P*CP*AP*CP*TP*G)-3' 著者 Smirnov, S, Johnson, F, de los Santos, C. 登録日 2000-09-30 公開日 2000-10-18 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural NMR characterization of an 11-mer DNA Duplex Containing a 2'-deoxyaristeromycin 8-oxo-Guanine pair, nonhydrolyzable substrate analog for the DNA repair enzyme MutY To be Published
3UXU	The structure of the catalytic domain of the Sulfolobus Spindle-shaped viral integrase reveals an evolutionarily conserved catalytic core and supports a mechanism of DNA cleavage in trans 分子名称: PHOSPHATE ION, Probable integrase 著者 Eilers, B.J, Young, M.J, Lawrence, C.M. 登録日 2011-12-05 公開日 2012-05-16 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.706 Å) 主引用文献 The Structure of an Archaeal Viral Integrase Reveals an Evolutionarily Conserved Catalytic Core yet Supports a Mechanism of DNA Cleavage in trans. J.Virol., 86, 2012
1QSX	SOLUTION NMR STRUCTURE OF THE 2:1 HOECHST 33258-D(CTTTTGCAAAAG)2 COMPLEX 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, 5'-D(CP*TP*TP*TP*TP*GP*CP*AP*AP*AP*AP*G)-3', SODIUM ION 著者 Gavathiotis, E, Sharman, G.J, Searle, M.S. 登録日 1999-06-24 公開日 2000-02-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Sequence-dependent variation in DNA minor groove width dictates orientational preference of Hoechst 33258 in A-tract recognition: solution NMR structure of the 2:1 complex with d(CTTTTGCAAAAG)(2). Nucleic Acids Res., 28, 2000
4G4K	Structure of the Staphylococcus aureus AgrA LytTR Domain 分子名称: Accessory gene regulator protein A, GLYCEROL 著者 Leonard, P.G, Bezar, I.F, Stock, A.M. 登録日 2012-07-16 公開日 2012-12-19 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Identification of a Hydrophobic Cleft in the LytTR Domain of AgrA as a Locus for Small Molecule Interactions That Inhibit DNA Binding. Biochemistry, 51, 2012
3H4R	Crystal structure of E. coli RecE exonuclease 分子名称: Exodeoxyribonuclease 8 著者 Bell, C.E, Zhang, J. 登録日 2009-04-20 公開日 2009-05-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of E. coli RecE protein reveals a toroidal tetramer for processing double-stranded DNA breaks. Structure, 17, 2009
6SQO	Crystal structure of human MDM2 RING domain homodimer bound to UbcH5B-Ub 分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2, NITRATE ION, ... 著者 Magnussen, H.M, Ahmed, S.F, Huang, D.T. 登録日 2019-09-04 公開日 2020-05-06 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.41 Å) 主引用文献 Structural basis for DNA damage-induced phosphoregulation of MDM2 RING domain. Nat Commun, 11, 2020
4QC7	Dodecamer structure of 5-formylcytosine containing DNA 分子名称: short DNA strands 著者 Szulik, M.W, Pallan, P, Egli, M, Stone, M.P. 登録日 2014-05-09 公開日 2015-02-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Differential stabilities and sequence-dependent base pair opening dynamics of watson-crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine. Biochemistry, 54, 2015
2M3K	Global fold of the type IV pilin ComP from Neisseria meningitidis 分子名称: Minor pilin ComP 著者 Simpson, P. 登録日 2013-01-21 公開日 2013-02-13 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Specific DNA recognition mediated by a type IV pilin. Proc.Natl.Acad.Sci.USA, 110, 2013
6SX6	Guanine-rich oligonucleotide with 5'-GC end form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pairs 分子名称: GCn 著者 Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P. 登録日 2019-09-25 公開日 2020-07-22 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly. Nucleic Acids Res., 48, 2020
7NQD	Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 分子名称: TPR_REGION domain-containing protein 著者 Li, A.W.H, Doherty, A.J. 登録日 2021-03-01 公開日 2022-05-04 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.97 Å) 主引用文献 Molecular basis for the initiation of DNA primer synthesis. Nature, 605, 2022
6SQS	Crystal structure of cat phospho-Ser429 MDM2 RING domain bound to UbcH5B-Ub 分子名称: E3 ubiquitin-protein ligase Mdm2, Ubiquitin-40S ribosomal protein S27a, Ubiquitin-conjugating enzyme E2 D2, ... 著者 Magnussen, H.M, Ahmed, S.F, Huang, D.T. 登録日 2019-09-04 公開日 2020-05-06 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Structural basis for DNA damage-induced phosphoregulation of MDM2 RING domain. Nat Commun, 11, 2020
7NQE	Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 with dGTP 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, ... 著者 Li, A.W.H, Doherty, A.J. 登録日 2021-03-01 公開日 2022-05-04 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.28 Å) 主引用文献 Molecular basis for the initiation of DNA primer synthesis. Nature, 605, 2022
6SQP	Crystal structure of Cat MDM2-S429E RING domain homodimer 分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2, NITRATE ION, ... 著者 Magnussen, H.M, Ahmed, S.F, Huang, D.T. 登録日 2019-09-04 公開日 2020-05-06 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.21 Å) 主引用文献 Structural basis for DNA damage-induced phosphoregulation of MDM2 RING domain. Nat Commun, 11, 2020
6SYK	Guanine-rich oligonucleotide with 5'- and 3'-GC ends form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pair 分子名称: GCnCG 著者 Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P. 登録日 2019-09-30 公開日 2020-07-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly. Nucleic Acids Res., 48, 2020
6TNH	Deoxyguanylosuccinate synthase (DgsS) quaternary structure with AMPPcP, dGMP, Asp, Magnesium at 2.21 Angstrom resolution 分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, ASPARTIC ACID, Adenylosuccinate synthetase, ... 著者 Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A. 登録日 2019-12-08 公開日 2020-12-16 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes. Science, 372, 2021
4RFR	Complex structure of AlkB/rhein 分子名称: 4,5-dihydroxy-9,10-dioxo-9,10-dihydroanthracene-2-carboxylic acid, Alpha-ketoglutarate-dependent dioxygenase AlkB, MANGANESE (II) ION 著者 Li, Q, Huang, Y, Li, J.F, Yang, C.-G. 登録日 2014-09-27 公開日 2016-04-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Rhein Inhibits AlkB Repair Enzymes and Sensitizes Cells to Methylated DNA Damage. J.Biol.Chem., 291, 2016
8GTD	Cryo-EM model of the marine siphophage vB_DshS-R4C portal-adaptor complex 分子名称: Head-to-tail joining protein, Portal protein 著者 Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N. 登録日 2022-09-08 公開日 2023-07-12 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023
8GTA	Cryo-EM structure of the marine siphophage vB_Dshs-R4C capsid 分子名称: Major capsid protein 著者 Sun, H, Huang, Y, Zheng, Q, Li, S, Zhang, R, Xia, N. 登録日 2022-09-07 公開日 2023-07-12 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (3.63 Å) 主引用文献 Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023
8GTF	Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex 分子名称: Head-to-tail joining protein, Major tail protein, Terminator protein 著者 Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N. 登録日 2022-09-08 公開日 2023-07-12 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (6.6 Å) 主引用文献 Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023
8GTB	Cryo-EM structure of the marine siphophage vB_DshS-R4C tail tube protein 分子名称: Major tail protein 著者 Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N. 登録日 2022-09-08 公開日 2023-07-12 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.43 Å) 主引用文献 Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023
8GTC	Cryo-EM model of the marine siphophage vB_DshS-R4C baseplate-tail complex 分子名称: Distal tail protein, Hub protein, Major tail protein, ... 著者 Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N. 登録日 2022-09-08 公開日 2023-07-12 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023
1GEF	Crystal structure of the archaeal holliday junction resolvase HJC 分子名称: HOLLIDAY JUNCTION RESOLVASE, SULFATE ION 著者 Nishino, T, Komori, K, Tsuchiya, D, Ishino, Y, Morikawa, K. 登録日 2000-11-08 公開日 2001-03-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition. Structure, 9, 2001
6SQR	Crystal structure of Cat MDM2-S429E RING domain bound to UbcH5B-Ub 分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase Mdm2, NITRATE ION, ... 著者 Magnussen, H.M, Ahmed, S.F, Huang, D.T. 登録日 2019-09-04 公開日 2020-05-06 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 Structural basis for DNA damage-induced phosphoregulation of MDM2 RING domain. Nat Commun, 11, 2020
5K5D	Structure of the C2221 form of Pnob8-like ParB-N domain 分子名称: CITRIC ACID, ParB domain protein nuclease 著者 Schumacher, M. 登録日 2016-05-23 公開日 2016-06-15 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structures of archaeal DNA segregation machinery reveal bacterial and eukaryotic linkages. Science, 349, 2015
1CS7	SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER 分子名称: 5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3', STRONTIUM ION 著者 Lewis, F.D, Liu, X, Wu, Y, Miller, S.E, Wasielewski, M.R, Letsinger, R.L, Sanishvili, R, Joachimiak, A, Tereshko, V, Egli, M. 登録日 1999-08-17 公開日 2001-10-19 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structure and Photoinduced Electron Transfer in Exceptionally Stable Synthetic DNA Hairpins with Stilbenediether Linkers J.Am.Chem.Soc., 121, 1999

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