PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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6GTS	Structure of the AtaT-AtaR complex bound DNA 分子名称: Acetyltransferase, DNA, DUF1778 domain-containing protein 著者 Garcia-Pino, A, Jurenas, D. 登録日 2018-06-19 公開日 2019-03-06 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (3.357 Å) 主引用文献 Mechanism of regulation and neutralization of the AtaR-AtaT toxin-antitoxin system. Nat. Chem. Biol., 15, 2019
7KIX	The structure of anti-CRISPR AcrIE2 分子名称: Anti-CRISPR protein AcrIE2 著者 Pawluk, A, Davidson, A.R, Maxwell, K.L. 登録日 2020-10-25 公開日 2021-05-26 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Anti-CRISPR AcrIE2 Binds the Type I-E CRISPR-Cas Complex But Does Not Block DNA Binding. J.Mol.Biol., 433, 2021
6TE9	Neck of native GTA particle computed with C6 symmetry 分子名称: Adaptor protein Rcc01688, Phage major tail protein, TP901-1 family, ... 著者 Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P. 登録日 2019-11-11 公開日 2020-07-22 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.58 Å) 主引用文献 Structure and mechanism of DNA delivery of a gene transfer agent. Nat Commun, 11, 2020
3P8M	Human dynein light chain (DYNLL2) in complex with an in vitro evolved peptide dimerized by leucine zipper 分子名称: Dynein light chain 2, General control protein GCN4 著者 Rapali, P, Radnai, L, Suveges, D, Hetenyi, C, Harmat, V, Tolgyesi, F, Wahlgren, W.Y, Katona, G, Nyitray, L, Pal, G. 登録日 2010-10-14 公開日 2011-08-31 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Directed evolution reveals the binding motif preference of the LC8/DYNLL hub protein and predicts large numbers of novel binders in the human proteome. Plos One, 6, 2011
6KE1	Crystal structure of TtCas1 分子名称: CRISPR-associated endonuclease Cas1 2 著者 Wang, Y.L, Li, J.Z, Yang, J, Wang, J.Y. 登録日 2019-07-03 公開日 2019-12-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.39 Å) 主引用文献 Crystal structure of Cas1 in complex with branched DNA. Sci China Life Sci, 63, 2020
6TE8	Neck of native GTA particle computed with C12 symmetry 分子名称: Adaptor protein Rcc01688, Phage portal protein, HK97 family 著者 Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P. 登録日 2019-11-11 公開日 2020-07-22 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.32 Å) 主引用文献 Structure and mechanism of DNA delivery of a gene transfer agent. Nat Commun, 11, 2020
6TEB	Tail-baseplate interface of native GTA particle computed with C6 symmetry 分子名称: Distal tail protein Rcc01695, Tail tube protein Rcc01691 著者 Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P. 登録日 2019-11-11 公開日 2020-07-22 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.14 Å) 主引用文献 Structure and mechanism of DNA delivery of a gene transfer agent. Nat Commun, 11, 2020
6TOA	Neck of empty GTA particle computed with C6 symmetry 分子名称: Adaptor protein Rcc01688, Portal protein Rcc01684, Stopper protein Rcc01689, ... 著者 Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P. 登録日 2019-12-11 公開日 2020-07-22 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.47 Å) 主引用文献 Structure and mechanism of DNA delivery of a gene transfer agent. Nat Commun, 11, 2020
6TSV	Tail of empty GTA particle computed with helical refinement, C6 symmetry 分子名称: Tail tube protein Rcc01691 著者 Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P. 登録日 2019-12-21 公開日 2020-07-22 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.78 Å) 主引用文献 Structure and mechanism of DNA delivery of a gene transfer agent. Nat Commun, 11, 2020
3GOX	Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA 分子名称: 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3', 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3', PENTAETHYLENE GLYCOL, ... 著者 Sokolowska, M, Czapinska, H, Bochtler, M. 登録日 2009-03-20 公開日 2009-04-28 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of the beta beta alpha-Me type II restriction endonuclease Hpy99I with target DNA. Nucleic Acids Res., 37, 2009
6TSW	Isometric capsid of empty GTA particle computed with I4(I,n25r) symmetry 分子名称: Major capsid protein Rcc01687 著者 Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P. 登録日 2019-12-21 公開日 2020-07-22 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.03 Å) 主引用文献 Structure and mechanism of DNA delivery of a gene transfer agent. Nat Commun, 11, 2020
6TBA	Virion of native gene transfer agent (GTA) particle 分子名称: IRON/SULFUR CLUSTER, Phage major capsid protein, HK97 family, ... 著者 Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P. 登録日 2019-11-01 公開日 2020-07-22 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.54 Å) 主引用文献 Structure and mechanism of DNA delivery of a gene transfer agent. Nat Commun, 11, 2020
2YX7	Crystals structure of T132A mutant of St1022 from sulfolobus tokodaii 7 分子名称: 150aa long hypothetical transcriptional regulator, GLUTAMINE, MAGNESIUM ION 著者 Kumarevel, T.S, Karthe, P, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-24 公開日 2008-04-29 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding Nucleic Acids Res., 36, 2008
2YX4	Crystal Structure of T134A of ST1022 from Sulfolobus tokodaii 分子名称: 150aa long hypothetical transcriptional regulator, GLUTAMINE, MAGNESIUM ION 著者 Kumarevel, T.S, Karthe, P, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-24 公開日 2008-04-29 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding Nucleic Acids Res., 36, 2008
1CP8	NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9 分子名称: 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE, DNA (5'-D(P*TP*TP*GP*GP*CP*CP*AP*A)-3'), MAGNESIUM ION, ... 著者 Katahira, R, Katahira, M, Yamashita, Y, Ogawa, H, Kyogoku, Y, Yoshida, M. 登録日 1999-06-11 公開日 1999-07-01 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure of the novel antitumor drug UCH9 complexed with d(TTGGCCAA)2 as determined by NMR. Nucleic Acids Res., 26, 1998
2EFO	Crystal structure of Tyr77 to Ala of ST1022 from Sulfolobus tokodaii 7 分子名称: 150aa long hypothetical transcriptional regulator, MAGNESIUM ION 著者 Kumarevel, T.S, Karthe, P, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-02-23 公開日 2008-02-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding. Nucleic Acids Res., 36, 2008
2EFQ	Crystal Structure of Thr134 to Ala of ST1022-Glutamine Complex from Sulfolobus tokodaii 7 分子名称: 150aa long hypothetical transcriptional regulator, GLUTAMINE, MAGNESIUM ION 著者 Kumarevel, T.S, Karthe, P, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-02-23 公開日 2008-03-04 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding. Nucleic Acids Res., 36, 2008
7C99	Human DMC1 post-synaptic complexes with mismatched dsDNA 分子名称: CALCIUM ION, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), ... 著者 Luo, S.C, Yeh, H.Y, Chi, P, Ho, M.C, Tsai, M.D. 登録日 2020-06-05 公開日 2020-11-18 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures. Nat Commun, 12, 2021
4K8V	Structure of cyclic GMP-AMP Synthase (cGAS) 分子名称: Cyclic GMP-AMP synthase, ZINC ION 著者 Gao, P, Wu, Y, Patel, D.J. 登録日 2013-04-18 公開日 2013-05-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase. Cell(Cambridge,Mass.), 153, 2013
5DLJ	Crystal Structure of Cas-DNA-N1 complex 分子名称: 39-mer DNA N1-F, 39-mer DNA N1-R, CRISPR-associated endonuclease Cas1, ... 著者 Wang, J, Li, J, Zhao, H, Sheng, G, Wang, M, Yin, M, Wang, Y. 登録日 2015-09-05 公開日 2015-11-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural and Mechanistic Basis of PAM-Dependent Spacer Acquisition in CRISPR-Cas Systems. Cell, 163, 2015
2VF7	Crystal structure of UvrA2 from Deinococcus radiodurans 分子名称: ADENOSINE-5'-DIPHOSPHATE, EXCINUCLEASE ABC, SUBUNIT A., ... 著者 Timmins, J, Gordon, E, Caria, S, Leonard, G, Kuo, M.S, Monchois, V, McSweeney, S. 登録日 2007-10-31 公開日 2008-12-16 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural and mutational analyses of Deinococcus radiodurans UvrA2 provide insight into DNA binding and damage recognition by UvrAs. Structure, 17, 2009
2PMH	Crystal structure of Thr132Ala of ST1022 from Sulfolobus tokodaii 分子名称: 150aa long hypothetical transcriptional regulator, GLUTAMINE, MAGNESIUM ION, ... 著者 Kumarevel, T.S, Karthe, P, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-22 公開日 2008-04-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding Nucleic Acids Res., 36, 2008
7CE1	Complex STRUCTURE OF TRANSCRIPTION FACTOR SghR with its COGNATE DNA 分子名称: LacI-type transcription factor, promoter DNA 著者 Ye, F.Z, Wang, C, Yan, X.F, Zhang, L.H, Gao, Y.G. 登録日 2020-06-21 公開日 2020-07-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural basis of a novel repressor, SghR, controllingAgrobacteriuminfection by cross-talking to plants. J.Biol.Chem., 295, 2020
2HAX	Crystal structure of Bacillus caldolyticus cold shock protein in complex with hexathymidine 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-D(*TP*TP*TP*TP*TP*T)-3', CALCIUM ION, ... 著者 Max, K.E.A, Heinemann, U. 登録日 2006-06-13 公開日 2007-04-24 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Common mode of DNA binding to cold shock domains. Crystal structure of hexathymidine bound to the domain-swapped form of a major cold shock protein from Bacillus caldolyticus. Febs J., 274, 2007
2PN6	Crystal Structure of S32A of ST1022-Gln complex from Sulfolobus tokodaii 分子名称: 150aa long hypothetical transcriptional regulator, GLUTAMINE, MAGNESIUM ION 著者 Kumarevel, T.S, Karthe, P, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-23 公開日 2008-04-29 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.44 Å) 主引用文献 Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding Nucleic Acids Res., 36, 2008

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