PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

---

4CEJ	Crystal structure of AddAB-DNA-ADPNP complex at 3 Angstrom resolution 分子名称: ATP-DEPENDENT HELICASE/DEOXYRIBONUCLEASE SUBUNIT B, ATP-DEPENDENT HELICASE/NUCLEASE SUBUNIT A, DNA, ... 著者 Krajewski, W.W, Wilkinson, M, Fu, X, Cronin, N.B, Wigley, D. 登録日 2013-11-11 公開日 2014-03-12 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Basis for Translocation by Addab Helicase-Nuclease and its Arrest at Chi Sites. Nature, 508, 2014
2L4M	Solution structure of the Zbeta domain of human DAI and its binding modes to B- and Z-DNA 分子名称: Uncharacterized protein 著者 Kim, K, Khayrutdinov, B.I, Jeon, Y.H, Kim, K.K. 登録日 2010-10-08 公開日 2011-04-13 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of the Zbeta domain of human DNA-dependent activator of IFN-regulatory factors and its binding modes to B- and Z-DNA Proc.Natl.Acad.Sci.USA, 2011
2F4Q	Crystal Structure of Deinococcus radiodurans topoisomerase IB 分子名称: type I topoisomerase, putative 著者 Patel, A, Shuman, S, Mondragon, A. 登録日 2005-11-23 公開日 2005-12-27 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of a bacterial type IB DNA topoisomerase reveals a preassembled active site in the absence of DNA. J.Biol.Chem., 281, 2006
7QW8	Adenine-specific DNA methyltransferase M.BseCI 分子名称: Modification methylase BseCI 著者 Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M. 登録日 2022-01-24 公開日 2023-01-25 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus. To Be Published
1I3W	ACTINOMYCIN D BINDING TO CGATCGATCG 分子名称: 5'-D(*C*GP*AP*TP*CP*GP*AP*(BRU)P*CP*GP)-3', ACTINOMYCIN D 著者 Robinson, H, Gao, Y.-G, Yang, X.-L, Sanishvili, R, Joachimiak, A, Wang, A.H.-J. 登録日 2001-02-17 公開日 2001-05-21 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystallographic Analysis of a Novel Complex of Actinomycin D Bound to the DNA Decamer Cgatcgatcg. Biochemistry, 40, 2001
6RY3	Structure of the WUS homeodomain 分子名称: ACETYL GROUP, Protein WUSCHEL, SULFATE ION 著者 Sloan, J.J, Wild, K, Sinning, I. 登録日 2019-06-10 公開日 2020-04-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.374 Å) 主引用文献 Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun, 11, 2020
1IQT	Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1) 分子名称: heterogeneous nuclear ribonucleoprotein D0 著者 Katahira, M, Miyanoiri, Y, Enokizono, Y, Matsuda, G, Nagata, T, Ishikawa, F, Uesugi, S. 登録日 2001-08-01 公開日 2002-08-07 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA. J.Mol.Biol., 311, 2001
6PLC	Structure of human DNA polymerase eta complexed with 8OA in the template base paired with incoming non-hydrolyzable GTP 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(A38)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2019-06-30 公開日 2020-04-22 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Mutagenesis mechanism of the major oxidative adenine lesion 7,8-dihydro-8-oxoadenine. Nucleic Acids Res., 48, 2020
6P81	Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin 分子名称: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, ACETATE ION, CALCIUM ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2019-06-06 公開日 2019-07-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin to be published
5VAJ	BhRNase H - amide-RNA/DNA complex 分子名称: ACETATE ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3'), GLYCEROL, ... 著者 Pallan, P.S, Egli, M. 登録日 2017-03-27 公開日 2017-09-13 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs. Nucleic Acids Res., 45, 2017
8W35	Aca2 from Pectobacterium phage ZF40 bound to RNA 分子名称: Anti-CRISPR associated (Aca) protein, Aca2, IR2 and IR-RBS RNA 著者 Wilkinson, M.E, Birkholz, N, Kimanius, D, Fineran, P.C. 登録日 2024-02-21 公開日 2024-07-24 最終更新日 2024-08-14 実験手法 ELECTRON MICROSCOPY (2.61 Å) 主引用文献 Phage anti-CRISPR control by an RNA- and DNA-binding helix-turn-helix protein. Nature, 631, 2024
6YN1	Crystal structure of histone chaperone APLF acidic domain bound to the histone H2A-H2B-H3-H4 octamer 分子名称: Aprataxin and PNK-like factor, CHLORIDE ION, GLYCEROL, ... 著者 Corbeski, I, Guo, X, Van Ingen, H, Sixma, T.K. 登録日 2020-04-10 公開日 2021-11-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF. Sci Adv, 8, 2022
2H7G	Structure of variola topoisomerase non-covalently bound to DNA 分子名称: 5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*TP*A)-3', DNA topoisomerase 1 著者 Perry, K, Hwang, Y, Bushman, F.D, Van Duyne, G.D. 登録日 2006-06-02 公開日 2006-08-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for specificity in the poxvirus topoisomerase. Mol.Cell, 23, 2006
8F27	Mirror-image DNA containing 2'-OMe-L-uridine residue 分子名称: Mirror-image DNA (5'-D(*(0DG)P*(0MU)P*(0DG)P*(0DT)P*(0DA)P*(0DC)P*(0DA)P*(0DC))-3'), SULFATE ION 著者 Zhang, W, Dantsu, Y. 登録日 2022-11-07 公開日 2023-04-12 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Derivatization of Mirror-Image l-Nucleic Acids with 2'-OMe Modification for Thermal and Structural Stabilization. Chembiochem, 24, 2023
4RXJ	crystal structure of WHSC1L1-PWWP2 分子名称: Histone-lysine N-methyltransferase NSD3, UNKNOWN ATOM OR ION 著者 Qin, S, Tempel, W, Dong, A, Li, Y, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2014-12-11 公開日 2015-01-28 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Histone and DNA binding ability studies of the NSD subfamily of PWWP domains. Biochem.Biophys.Res.Commun., 569, 2021
7TAW	Cryo-EM structure of the Csy-AcrIF24-promoter DNA dimer 分子名称: AcrIF24, CRISPR type I-F/YPEST-associated protein Csy2, CRISPR type I-F/YPEST-associated protein Csy3, ... 著者 Mukherjee, I.A, Chang, L. 登録日 2021-12-21 公開日 2022-09-21 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural basis of AcrIF24 as an anti-CRISPR protein and transcriptional suppressor. Nat.Chem.Biol., 18, 2022
7TAX	Cryo-EM structure of the Csy-AcrIF24-promoter DNA complex 分子名称: AcrIF24, CRISPR type I-F/YPEST-associated protein Csy2, CRISPR type I-F/YPEST-associated protein Csy3, ... 著者 Mukherjee, I.A, Chang, L. 登録日 2021-12-21 公開日 2022-09-21 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural basis of AcrIF24 as an anti-CRISPR protein and transcriptional suppressor. Nat.Chem.Biol., 18, 2022
1DNO	A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES 分子名称: DNA/RNA (5'-R(*GP*CP*GP)-D(*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION 著者 Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J. 登録日 1999-12-16 公開日 2000-04-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes. Nucleic Acids Res., 28, 2000
8Q7I	PCNA from Chaetomium thermophilum in complex with Fen1 peptide 分子名称: Flap endonuclease 1, Proliferating cell nuclear antigen, SODIUM ION 著者 Alphey, M.S, Wolford, C.B, MacNeill, S.A. 登録日 2023-08-16 公開日 2023-12-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Canonical binding of Chaetomium thermophilum DNA polymerase delta / zeta subunit PolD3 and flap endonuclease Fen1 to PCNA. Front Mol Biosci, 10, 2023
4ATK	MITF:E-box complex 分子名称: 5'-D(*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*T)-3', MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR 著者 Pogenberg, V, Deineko, V, Wilmanns, M. 登録日 2012-05-08 公開日 2012-12-12 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Restricted Leucine Zipper Dimerization and Specificity of DNA Recognition of the Melanocyte Master Regulator Mitf Genes Dev., 26, 2012
2B0E	EcoRV Restriction Endonuclease/GAAUTC/Ca2+ 分子名称: 5'-D(*AP*AP*AP*GP*AP*AP*(DU)P*TP*CP*TP*T)-3', CALCIUM ION, Type II restriction enzyme EcoRV 著者 Hiller, D.A, Rodriguez, A.M, Perona, J.J. 登録日 2005-09-13 公開日 2005-09-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Non-cognate Enzyme-DNA Complex: Structural and Kinetic Analysis of EcoRV Endonuclease Bound to the EcoRI Recognition Site GAATTC J.Mol.Biol., 354, 2005
3NNQ	Crystal Structure of the N-terminal domain of Moloney murine leukemia virus integrase, Northeast Structural Genomics Consortium Target OR3 分子名称: ACETATE ION, N-terminal domain of Moloney murine leukemia virus integrase, ZINC ION 著者 Guan, R, Xiao, R, Acton, T, Jiang, M, Roth, M, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2010-06-24 公開日 2010-07-14 最終更新日 2023-07-26 実験手法 X-RAY DIFFRACTION (2.693 Å) 主引用文献 X-ray crystal structure of the N-terminal region of Moloney murine leukemia virus integrase and its implications for viral DNA recognition. Proteins, 85, 2017
2B0D	EcoRV Restriction Endonuclease/GAATTC/Ca2+ 分子名称: 5'-D(*AP*AP*AP*GP*AP*AP*TP*TP*CP*TP*T)-3', CALCIUM ION, Type II restriction enzyme EcoRV 著者 Hiller, D.A, Rodriguez, A.M, Perona, J.J. 登録日 2005-09-13 公開日 2005-09-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Non-cognate Enzyme-DNA Complex: Structural and Kinetic Analysis of EcoRV Endonuclease Bound to the EcoRI Recognition Site GAATTC J.Mol.Biol., 354, 2005
7LCC	Helitron transposase bound to LTS 分子名称: Helraiser K1068Q, LTS, ZINC ION 著者 Kosek, D, Dyda, F. 登録日 2021-01-10 公開日 2021-08-25 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.66 Å) 主引用文献 The large bat Helitron DNA transposase forms a compact monomeric assembly that buries and protects its covalently bound 5'-transposon end. Mol.Cell, 81, 2021
2H7F	Structure of variola topoisomerase covalently bound to DNA 分子名称: 5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*T)-3', DNA topoisomerase 1 著者 Perry, K, Hwang, Y, Bushman, F.D, Van Duyne, G.D. 登録日 2006-06-02 公開日 2006-08-15 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for specificity in the poxvirus topoisomerase. Mol.Cell, 23, 2006

<430431432433434435436437438439440441442443444445>