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4WFC
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BU of 4wfc by Molmil
Structure of the Rrp6-Rrp47 interaction
分子名称: Exosome complex exonuclease RRP6, Exosome complex protein LRP1, SULFATE ION
著者Schuch, B, Conti, E.
登録日2014-09-14
公開日2014-10-29
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The exosome-binding factors Rrp6 and Rrp47 form a composite surface for recruiting the Mtr4 helicase.
Embo J., 33, 2014
5MA8
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BU of 5ma8 by Molmil
GFP-binding DARPin 3G124nc
分子名称: GA-binding protein subunit beta-1, Green fluorescent protein
著者Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A.
登録日2016-11-03
公開日2017-12-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity.
Sci Rep, 7, 2017
7A7R
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BU of 7a7r by Molmil
rsGreenF-K206A in the green-off state
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Green fluorescent protein
著者De Zitter, E, Dedecker, P, Van Meervelt, L.
登録日2020-08-30
公開日2021-02-17
最終更新日2021-05-05
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*.
Angew.Chem.Int.Ed.Engl., 60, 2021
7U6P
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BU of 7u6p by Molmil
Structure of an intellectual disability-associated ornithine decarboxylase variant G84R
分子名称: Ornithine decarboxylase, PHOSPHATE ION
著者Zhou, X.E, Schultz, C.R, Powell, K.S, Henrickson, A, Lamp, J, Brunzelle, J.S, Demeler, B, Vega, I.E, Bachmann, A.S, Melcher, K.
登録日2022-03-04
公開日2022-10-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure and Enzymatic Activity of an Intellectual Disability-Associated Ornithine Decarboxylase Variant, G84R.
Acs Omega, 7, 2022
5DU0
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BU of 5du0 by Molmil
Crystal structure of rsFolder in the non-fluorescent off-state
分子名称: Green fluorescent protein
著者El Khatib, M, Colletier, J.P, Adam, V.
登録日2015-09-18
公開日2016-01-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Rational design of ultrastable and reversibly photoswitchable fluorescent proteins for super-resolution imaging of the bacterial periplasm.
Sci Rep, 6, 2016
4JEO
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BU of 4jeo by Molmil
Crystal structure of red fluorescent protein lanRFPdam exposed to prolonged X-ray irradiation
分子名称: GLYCEROL, Red fluorescent protein blFP-R5
著者Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
登録日2013-02-27
公開日2013-09-18
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.
Acta Crystallogr.,Sect.D, 69, 2013
4D2B
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BU of 4d2b by Molmil
Structure of a ligand free POT family peptide transporter
分子名称: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, DI-OR TRIPEPTIDE:H+ SYMPORTER, ...
著者Lyons, J.A, Parker, J.L, Solcan, N, Brinth, A, Li, D, Shah, S.T.A, Caffrey, M, Newstead, S.
登録日2014-05-09
公開日2014-06-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural Basis for Polyspecificity in the Pot Family of Proton-Coupled Oligopeptide Transporters.
Embo Rep., 15, 2014
8BAN
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BU of 8ban by Molmil
Secretagogin (mouse) in complex with its target peptide from SNAP-25
分子名称: CALCIUM ION, Green fluorescent protein,Synaptosomal-associated protein 25, Secretagogin
著者Schnell, R, Szodorai, E.
登録日2022-10-11
公開日2024-04-03
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献A hydrophobic groove in secretagogin allows for alternate interactions with SNAP-25 and syntaxin-4 in endocrine tissues.
Proc.Natl.Acad.Sci.USA, 121, 2024
5BJO
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BU of 5bjo by Molmil
Crystal structure of the Corn RNA aptamer in complex with DFHO, site-specific 5-iodo-U
分子名称: (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, POTASSIUM ION, ...
著者Warner, K.D, Song, W, Filonov, G.S, Jaffrey, S.R, Ferre-D'Amare, A.R.
登録日2016-08-21
公開日2017-09-27
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献A homodimer interface without base pairs in an RNA mimic of red fluorescent protein.
Nat. Chem. Biol., 13, 2017
3O77
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BU of 3o77 by Molmil
The structure of Ca2+ Sensor (Case-16)
分子名称: CALCIUM ION, CHLORIDE ION, Myosin light chain kinase, ...
著者Leder, L, Stark, W, Freuler, F, Marsh, M, Meyerhofer, M, Stettler, T, Mayr, L.M, Britanova, O.V, Strukova, L.A, Chudakov, D.M.
登録日2010-07-30
公開日2010-09-29
最終更新日2017-06-21
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The structure of Ca2+ sensor Case16 reveals the mechanism of reaction to low Ca2+ concentrations
Sensors (Basel), 10, 2010
6R4E
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BU of 6r4e by Molmil
Crystal structure of human GFAT-1 in complex with Glucose-6-Phosphate and L-Glu
分子名称: GLUCOSE-6-PHOSPHATE, GLUTAMIC ACID, Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1
著者Ruegenberg, S, Horn, M, Pichlo, C, Allmeroth, K, Baumann, U, Denzel, M.S.
登録日2019-03-22
公開日2020-01-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.353 Å)
主引用文献Loss of GFAT-1 feedback regulation activates the hexosamine pathway that modulates protein homeostasis.
Nat Commun, 11, 2020
7Z02
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BU of 7z02 by Molmil
Z-SBTub2M photoswitch bound to tubulin-DARPin D1 complex
分子名称: 6-methyl-2-[2-(3,4,5-trimethoxyphenyl)ethyl]-1,3-benzothiazole, Designed Ankyrin Repeat Protein (DARPIN) D1, GUANOSINE-5'-DIPHOSPHATE, ...
著者Wranik, M, Weinert, T, Standfuss, J, Steinmetz, M.
登録日2022-02-21
公開日2022-03-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献In Vivo Photocontrol of Microtubule Dynamics and Integrity, Migration and Mitosis, by the Potent GFP-Imaging-Compatible Photoswitchable Reagents SBTubA4P and SBTub2M.
J.Am.Chem.Soc., 144, 2022
7SAJ
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BU of 7saj by Molmil
Crystal Structure of LaM2 Nanobody bound to mCherry
分子名称: mCherry, nanobody LaM2
著者Cong, A.T.Q, Schellenberg, M.J.
登録日2021-09-22
公開日2022-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices.
Protein Sci., 31, 2022
8SFS
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BU of 8sfs by Molmil
High Affinity nanobodies against GFP
分子名称: AMMONIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Ketaren, N.E, Rout, M.P, Bonnano, J.B, Almo, S.C.
登録日2023-04-11
公開日2024-05-22
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献High Affinity nanobodies against GFP
To Be Published
4JKY
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BU of 4jky by Molmil
Cobalt between two ADP's in the active site of adenylate kinase
分子名称: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase, COBALT (II) ION
著者Cho, Y.-J, Kern, D.
登録日2013-03-12
公開日2014-06-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.373 Å)
主引用文献The energy landscape of adenylate kinase during catalysis.
Nat.Struct.Mol.Biol., 22, 2015
7QIZ
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BU of 7qiz by Molmil
Specific features and methylation sites of a plant 80S ribosome
分子名称: 1,4-DIAMINOBUTANE, 18S, 25S rRNA, ...
著者Cottilli, P, Itoh, Y, Amunts, A.
登録日2021-12-16
公開日2022-08-03
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.38 Å)
主引用文献Cryo-EM structure and rRNA modification sites of a plant ribosome.
Plant Commun., 3, 2022
7OY6
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BU of 7oy6 by Molmil
Crystal structure of human DYRK1A in complex with ARN25068
分子名称: Dual specificity tyrosine-phosphorylation-regulated kinase 1A, ~{N}4-(3-cyclopropyl-1~{H}-pyrazol-5-yl)-~{N}2-(phenylmethyl)thieno[3,2-d]pyrimidine-2,4-diamine
著者Tripathi, S.K, Balboni, B, Demuro, S, DiMartino, R, Ortega, J, Girotto, S, Cavalli, A.
登録日2021-06-23
公開日2022-03-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献ARN25068, a versatile starting point towards triple GSK-3 beta /FYN/DYRK1A inhibitors to tackle tau-related neurological disorders.
Eur.J.Med.Chem., 229, 2022
8AUV
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BU of 8auv by Molmil
Cryo-EM structure of the plant 40S subunit
分子名称: 18S rRNA, MAGNESIUM ION, POTASSIUM ION, ...
著者Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R.
登録日2022-08-25
公開日2023-06-07
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.38 Å)
主引用文献Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Nat.Plants, 9, 2023
8AHA
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BU of 8aha by Molmil
rsEGFP2 photoswitched to its off-state at 100K
分子名称: Green fluorescent protein, SULFATE ION
著者Mantovanelli, A, Adam, V.
登録日2022-07-21
公開日2023-07-19
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Photophysical Studies at Cryogenic Temperature Reveal a Novel Photoswitching Mechanism of rsEGFP2.
J.Am.Chem.Soc., 145, 2023
8EVP
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BU of 8evp by Molmil
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ...
著者Zhao, Y, Rai, J, Li, H.
登録日2022-10-20
公開日2023-09-06
実験手法ELECTRON MICROSCOPY (2.38 Å)
主引用文献Regulation of translation by ribosomal RNA pseudouridylation.
Sci Adv, 9, 2023
8BVG
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BU of 8bvg by Molmil
Bright fluorescent protein BrUSLEE with subnanosecond fluorescence lifetime
分子名称: BrUSSLEE, GLYCEROL
著者Pletnev, V, Pletneva, N.
登録日2022-12-03
公開日2023-04-12
最終更新日2023-04-26
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Crystal Structure of Bright Fluorescent Protein BrUSLEE with Subnanosecond Fluorescence Lifetime; Electric and Dynamic Properties.
Int J Mol Sci, 24, 2023
6ZMK
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BU of 6zmk by Molmil
Crystal structure of human GFAT-1 L405R
分子名称: GLUCOSE-6-PHOSPHATE, GLUTAMIC ACID, Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1
著者Ruegenberg, S, Mayr, F, Miethe, S, Atanassov, I, Baumann, U, Denzel, M.S.
登録日2020-07-02
公開日2020-08-05
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.382 Å)
主引用文献Protein kinase A controls the hexosamine pathway by tuning the feedback inhibition of GFAT-1.
Nat Commun, 12, 2021
5T4I
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BU of 5t4i by Molmil
A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme
分子名称: DNA (5'-D(*GP*CP*AP*CP*GP*TP*CP*AP*G)-3'), DNA (5'-D(P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3'), MANGANESE (II) ION, ...
著者Szymanski, M.R, Yin, W.Y.
登録日2016-08-29
公開日2017-05-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.389 Å)
主引用文献A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease.
Nat Commun, 8, 2017
9MHT
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BU of 9mht by Molmil
CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI/DNA COMPLEX
分子名称: 5'-D(P*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*AP*GP*(3DR)P*GP*CP*AP*TP*GP*G)-3', CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI, ...
著者O'Gara, M, Horton, J.R, Roberts, R.J, Cheng, X.
登録日1998-08-07
公開日1998-12-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base.
Nat.Struct.Biol., 5, 1998
6AA6
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BU of 6aa6 by Molmil
X-ray structure of ReQy1 (reduced form)
分子名称: Green fluorescent protein
著者Kurisu, G, Yasuda, A, Tabushi, N, Tanaka, H.
登録日2018-07-17
公開日2019-05-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Multicolor redox sensor proteins can visualize redox changes in various compartments of the living cell.
Biochim Biophys Acta Gen Subj, 1863, 2019

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