PDB: 2091 件ウェブページステータス検索Chemie searchBIRD

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3ZUL	Padron on (fluorescent) Icis intermediate state 分子名称: FLUORESCENT PROTEIN DRONPA 著者 Faro, A.R, Carpentier, P, Bougeois, D. 登録日 2011-07-19 公開日 2011-11-09 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Low-Temperature Chromophore Isomerization Reveals the Photoswitching Mechanism of the Fluorescent Protein Padron. J.Am.Chem.Soc., 133, 2011
7OYD	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Leesch, F, Lorenzo-Orts, L, Grishkovskaya, I, Kandolf, S, Belacic, K, Meinhart, A, Haselbach, D, Pauli, A. 登録日 2021-06-24 公開日 2022-07-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.3 Å) 主引用文献 A molecular network of conserved factors keeps ribosomes dormant in the egg. Nature, 613, 2023
4NDK	Crystal structure of a computational designed engrailed homeodomain variant fused with YFP 分子名称: E23P-YFP, GFP-like fluorescent chromoprotein FP506, related, ... 著者 Mou, Y, Mayo, S.L. 登録日 2013-10-26 公開日 2014-11-05 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants. J.Mol.Biol., 427, 2015
2EMN	GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT 分子名称: GREEN FLUORESCENT PROTEIN 著者 Palm, G, Zdanov, A, Wlodawer, A. 登録日 1997-03-31 公開日 1997-08-20 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The structural basis for spectral variations in green fluorescent protein. Nat.Struct.Biol., 4, 1997
6Y1G	Photoconverted HcRed in its optoacoustic state 分子名称: 1,2-ETHANEDIOL, GFP-like non-fluorescent chromoprotein 著者 Janowski, R, Fuenzalida-Werner, J.P, Mishra, K, Stiel, A.C, Niessing, D. 登録日 2020-02-12 公開日 2020-07-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Challenging a Preconception: Optoacoustic Spectrum Differs from the Optical Absorption Spectrum of Proteins and Dyes for Molecular Imaging. Anal.Chem., 92, 2020
6QFO	EngBF DARPin Fusion 9b 3G124 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MANGANESE (II) ION, ... 著者 Ernst, P, Pluckthun, A, Mittl, P.R.E. 登録日 2019-01-10 公開日 2019-11-06 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural analysis of biological targets by host:guest crystal lattice engineering. Sci Rep, 9, 2019
5Y8R	ZsYellow at pH 3.5 分子名称: GFP-like fluorescent chromoprotein FP538 著者 Bae, J.E, Kim, I.J, Nam, K.H. 登録日 2017-08-21 公開日 2017-09-13 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Disruption of the hydrogen bonding network determines the pH-induced non-fluorescent state of the fluorescent protein ZsYellow by protonation of Glu221. Biochem. Biophys. Res. Commun., 493, 2017
6R73	Structure of IMP-13 metallo-beta-lactamase complexed with hydrolysed meropenem 分子名称: (2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid, Beta-lactamase, ZINC ION 著者 Softley, C.A, Zak, K, Kolonko, M, Sattler, M, Popowicz, G. 登録日 2019-03-28 公開日 2020-03-25 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and Molecular Recognition Mechanism of IMP-13 Metallo-beta-Lactamase. Antimicrob.Agents Chemother., 64, 2020
7DNA	Photocleavable Fluorescent Protein in green and red form 分子名称: Green-to-red photoconvertible GFP-like protein, PHENYLALANINE AMIDE 著者 Wen, Y, Lemieux, J.M. 登録日 2020-12-09 公開日 2021-01-27 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Photocleavable proteins that undergo fast and efficient dissociation. Chem Sci, 12, 2021
2Z6X	Crystal structure of 22G, the wild-type protein of the photoswitchable GFP-like protein Dronpa 分子名称: photochromic protein Dronpa 著者 Kikuchi, A, Jeyakanthan, J, Taka, J, Shiro, Y, Mizuno, H, Miyawaki, A. 登録日 2007-08-09 公開日 2008-07-22 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Light-dependent regulation of structural flexibility in a photochromic fluorescent protein. Proc.Natl.Acad.Sci.Usa, 105, 2008
5HJQ	Crystal structure of the TBC domain of Skywalker/TBC1D24 from Drosophila melanogaster in complex with inositol(1,4,5)triphosphate 分子名称: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, LD10117p 著者 Fischer, B, Paesmans, J, Versees, W. 登録日 2016-01-13 公開日 2016-09-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Skywalker-TBC1D24 has a lipid-binding pocket mutated in epilepsy and required for synaptic function. Nat.Struct.Mol.Biol., 23, 2016
1EMM	GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT 分子名称: GREEN FLUORESCENT PROTEIN 著者 Palm, G, Zdanov, A, Wlodawer, A. 登録日 1997-03-31 公開日 1997-08-20 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The structural basis for spectral variations in green fluorescent protein. Nat.Struct.Biol., 4, 1997
4U2V	Bak BH3-in-Groove dimer (GFP) 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CACODYLATE ION, Green fluorescent protein,Bcl-2 homologous antagonist/killer 著者 Brouwer, J.M, Colman, P.M, Czabotar, P.E. 登録日 2014-07-18 公開日 2014-09-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Bak Core and Latch Domains Separate during Activation, and Freed Core Domains Form Symmetric Homodimers. Mol.Cell, 55, 2014
1EML	GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT 分子名称: GREEN FLUORESCENT PROTEIN 著者 Palm, G, Zdanov, A, Wlodawer, A. 登録日 1997-03-31 公開日 1997-08-20 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The structural basis for spectral variations in green fluorescent protein. Nat.Struct.Biol., 4, 1997
2B3Q	Crystal structure of a well-folded variant of green fluorescent protein 分子名称: MAGNESIUM ION, green fluorescent protein 著者 Pedelacq, J.D, Cabantous, S, Tran, T.H, Terwilliger, T.C, Waldo, G.S. 登録日 2005-09-20 公開日 2005-11-08 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Engineering and characterization of a superfolder green fluorescent protein. Nat.Biotechnol., 24, 2006
8BAV	Secretagogin (human) in complex with its target peptide from SNAP-25 分子名称: ACETATE ION, CALCIUM ION, Green fluorescent protein,Synaptosomal-associated protein 25, ... 著者 Schnell, R, Szodorai, E. 登録日 2022-10-12 公開日 2024-04-03 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A hydrophobic groove in secretagogin allows for alternate interactions with SNAP-25 and syntaxin-4 in endocrine tissues. Proc.Natl.Acad.Sci.USA, 121, 2024
6GRM	Structure of GFPmut2 crystallized at pH 6 and transferred to pH 9 分子名称: Green fluorescent protein 著者 Lolli, G, Raboni, S, Pasqualetto, E, Campanini, B, Mozzarelli, A, Bettati, S, Battistutta, R. 登録日 2018-06-11 公開日 2018-12-19 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J.Phys.Chem.B, 122, 2018
4ZVR	Caspase-7 Variant 4 (V4) with reprogrammed substrate specificity due to Y230V/W232Y/S234V/Q276D substitutions bound to DEVD inhibitor. 分子名称: Caspase-7, Peptide ACE-ASP-GLU-VAL-ASJ 著者 Hill, M.E, MacPherson, D.J, Hardy, J.A. 登録日 2015-05-18 公開日 2016-04-20 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Reprogramming Caspase-7 Specificity by Regio-Specific Mutations and Selection Provides Alternate Solutions for Substrate Recognition. Acs Chem.Biol., 11, 2016
1EMC	GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT 分子名称: GREEN FLUORESCENT PROTEIN 著者 Palm, G, Zdanov, A, Wlodawer, A. 登録日 1997-03-31 公開日 1997-08-20 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The structural basis for spectral variations in green fluorescent protein. Nat.Struct.Biol., 4, 1997
4GPB	COMPARISON OF THE BINDING OF GLUCOSE AND GLUCOSE-1-PHOSPHATE DERIVATIVES TO T-STATE GLYCOGEN PHOSPHORYLASE B 分子名称: 2-deoxy-2-fluoro-1-O-phosphono-alpha-D-glucopyranose, GLYCOGEN PHOSPHORYLASE B, PYRIDOXAL-5'-PHOSPHATE 著者 Martin, J.L, Johnson, L.N. 登録日 1990-06-04 公開日 1992-10-15 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Comparison of the binding of glucose and glucose 1-phosphate derivatives to T-state glycogen phosphorylase b. Biochemistry, 29, 1990
4PPJ	Crystal structure of Phanta, a weakly fluorescent photochromic GFP-like protein. ON state 分子名称: Monomeric Azami Green 著者 Don Paul, C, Traore, D.A.K, Devenish, R.J, Close, D, Bell, T, Bradbury, A, Wilce, M.C.J, Prescott, M. 登録日 2014-02-27 公開日 2015-04-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 X-Ray Crystal Structure and Properties of Phanta, a Weakly Fluorescent Photochromic GFP-Like Protein. Plos One, 10, 2015
5AB7	Crystal structure of Trypanosoma brucei SCP2-thiolase like protein (TbSLP) in complex with malonyl-CoA. 分子名称: MALONYL-COENZYME A, SCP2-THIOLASE LIKE PROTEIN, SULFATE ION 著者 Harijan, R.K, Kiema, T.R, Wierenga, R.K. 登録日 2015-08-02 公開日 2016-05-04 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The Scp2-Thiolase-Like Protein (Slp) of Trypanosoma Brucei is an Enzyme Involved in Lipid Metabolism. Proteins, 84, 2016
3MMI	Crystal structure of the globular tail of Myo4p 分子名称: Myosin-4 著者 Heuck, A, Niessing, D. 登録日 2010-04-19 公開日 2010-05-12 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The structure of the Myo4p globular tail and its function in ASH1 mRNA localization. J.Cell Biol., 189, 2010
5BZ3	CRYSTAL STRUCTURE OF SODIUM PROTON ANTIPORTER NAPA IN OUTWARD-FACING CONFORMATION. 分子名称: (2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE, Na(+)/H(+) antiporter 著者 Coincon, M, Uzdavinys, P, Emmanuel, N, Cameron, A, Drew, D. 登録日 2015-06-11 公開日 2016-01-20 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures reveal the molecular basis of ion translocation in sodium/proton antiporters. Nat.Struct.Mol.Biol., 23, 2016
4KGE	Crystal structure of near-infrared fluorescent protein with an extended stokes shift, pH 4.5 分子名称: CHLORIDE ION, TagRFP675, red fluorescent protein 著者 Malashkevich, V.N, Piatkevich, K, Almo, S.C, Verkhusha, V, New York Structural Genomics Research Consortium (NYSGRC) 登録日 2013-04-29 公開日 2013-05-08 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Extended Stokes shift in fluorescent proteins: chromophore-protein interactions in a near-infrared TagRFP675 variant. Sci Rep, 3, 2013

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