PDB: 318 件ウェブページステータス検索Chemie searchBIRD

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1J0H	Crystal structure of Bacillus stearothermophilus neopullulanase 分子名称: CALCIUM ION, CHLORIDE ION, neopullulanase 著者 Hondoh, H, Kuriki, T, Matsuura, Y. 登録日 2002-11-14 公開日 2003-01-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Three-dimensional Structure and Substrate Binding of Bacillus stearothermophilus Neopullulanase J.Mol.Biol., 326, 2003
1J0K	Crystal structure of neopullulanase E357Q complex with isopanose 分子名称: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, neopullulanase 著者 Hondoh, H, Kuriki, T, Matsuura, Y. 登録日 2002-11-14 公開日 2003-01-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase J.Mol.Biol., 326, 2003
1J0I	Crystal structure of neopullulanase complex with panose 分子名称: alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, neopullulanase 著者 Hondoh, H, Kuriki, T, Matsuura, Y. 登録日 2002-11-14 公開日 2003-01-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase J.Mol.Biol., 326, 2003
7VPY	Crystal structure of the neutralizing nanobody P86 against SARS-CoV-2 分子名称: 1,2-ETHANEDIOL, Nanobody, SULFATE ION 著者 Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A. 登録日 2021-10-18 公開日 2022-07-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron. Commun Biol, 5, 2022
7VQ0	Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A. 登録日 2021-10-18 公開日 2022-07-20 実験手法 ELECTRON MICROSCOPY (3.03 Å) 主引用文献 A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron. Commun Biol, 5, 2022
1IV8	Crystal Structure of Maltooligosyl trehalose synthase 分子名称: MALTOOLIGOSYL TREHALOSE SYNTHASE 著者 Kobayashi, M, Kubota, M, Matsuura, Y. 登録日 2002-03-15 公開日 2003-02-25 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Refined Structure and Functional Implications of Trehalose Synthase from Sulfolobus acidocaldarius J.APPL.Glyosci., 50, 2003
5H2X	Crystal structure of the karyopherin Kap60p bound to the SUMO protease Ulp1p (150-172) 分子名称: Importin subunit alpha, Ubiquitin-like-specific protease 1 著者 Hirano, H, Matsuura, Y. 登録日 2016-10-18 公開日 2016-12-14 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structures of the Karyopherins Kap121p and Kap60p Bound to the Nuclear Pore-Targeting Domain of the SUMO Protease Ulp1p J. Mol. Biol., 429, 2017
5H2W	Crystal structure of the karyopherin Kap60p bound to the SUMO protease Ulp1p (150-340) 分子名称: Importin subunit alpha, Ubiquitin-like-specific protease 1 著者 Hirano, H, Matsuura, Y. 登録日 2016-10-18 公開日 2016-12-14 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of the Karyopherins Kap121p and Kap60p Bound to the Nuclear Pore-Targeting Domain of the SUMO Protease Ulp1p J. Mol. Biol., 429, 2017
5GUA	Structure of biotin carboxyl carrier protein from pyrococcus horikoshi OT3 (delta N79) A138Y mutant 分子名称: 149aa long hypothetical methylmalonyl-CoA decarboxylase gamma chain 著者 Yamada, K, Kunishima, N, Matsuura, Y, Nakai, K, Naitow, H, Fukasawa, Y, Tomii, K. 登録日 2016-08-26 公開日 2017-08-30 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids. Acta Crystallogr D Struct Biol, 73, 2017
5GU9	Structure of biotin carboxyl carrier protein from pyrococcus horikoshi OT3 (delta N79) A138I mutant 分子名称: 149aa long hypothetical methylmalonyl-CoA decarboxylase gamma chain 著者 Yamada, K, Kunishima, N, Matsuura, Y, Nakai, K, Naitow, H, Fukasawa, Y, Tomii, K. 登録日 2016-08-26 公開日 2017-08-30 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids. Acta Crystallogr D Struct Biol, 73, 2017
5H2V	Crystal structure of the karyopherin Kap121p bound to the SUMO protease Ulp1p 分子名称: Importin subunit beta-3, Ubiquitin-like-specific protease 1 著者 Kobayashi, J, Matsuura, Y. 登録日 2016-10-18 公開日 2016-12-14 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structures of the Karyopherins Kap121p and Kap60p Bound to the Nuclear Pore-Targeting Domain of the SUMO Protease Ulp1p J. Mol. Biol., 429, 2017
5GU8	Structure of biotin carboxyl carrier protein from pyrococcus horikoshi OT3 (delta N79) wild type 分子名称: 149aa long hypothetical methylmalonyl-CoA decarboxylase gamma chain, SODIUM ION 著者 Yamada, K, Kunishima, N, Matsuura, Y, Nakai, K, Naitow, H, Fukasawa, Y, Tomii, K. 登録日 2016-08-26 公開日 2017-08-30 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids. Acta Crystallogr D Struct Biol, 73, 2017
7E7F	Human CYP11B1 mutant in complex with metyrapone 分子名称: CHOLIC ACID, Cytochrome P450 11B1, mitochondrial, ... 著者 Mukai, K, Sugimoto, H, Reiko, S, Matsuura, T, Hishiki, T, Kagawa, N. 登録日 2021-02-26 公開日 2022-01-05 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Spatially restricted substrate-binding site of cortisol-synthesizing CYP11B1 limits multiple hydroxylations and hinders aldosterone synthesis. Curr Res Struct Biol, 3, 2021
5XVB	[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an H2-reduced condition 分子名称: FE3-S4 CLUSTER, GLYCEROL, IRON/SULFUR CLUSTER, ... 著者 Nishikawa, K, Matsuura, H, Muhd Noor, N.D, Tai, H, Hirota, S, Kim, J, Kang, J, Tateno, M, Yoon, K.S, Ogo, S, Shomura, Y, Higuchi, Y. 登録日 2017-06-27 公開日 2018-06-27 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Redox-dependent conformational changes of a proximal [4Fe-4S] cluster in Hyb-type [NiFe]-hydrogenase to protect the active site from O2. Chem.Commun.(Camb.), 54, 2018
5XVD	[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an air-oxidized condition 分子名称: FE3-S4 CLUSTER, FE4-S4-O CLUSTER, GLYCEROL, ... 著者 Nishikawa, K, Matsuura, H, Muhd Noor, N.D, Tai, H, Hirota, S, Kim, J, Kang, J, Tateno, M, Yoon, K.S, Ogo, S, Shomura, Y, Higuchi, Y. 登録日 2017-06-27 公開日 2018-06-27 最終更新日 2019-07-10 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Redox-dependent conformational changes of a proximal [4Fe-4S] cluster in Hyb-type [NiFe]-hydrogenase to protect the active site from O2. Chem.Commun.(Camb.), 54, 2018
5XZX	Crystal structure of importin-alpha3 bound to the nuclear localization signal of Ran-binding protein 3 分子名称: Importin subunit alpha-3, Ran-binding protein 3 著者 Koyama, M, Matsuura, Y. 登録日 2017-07-14 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of importin-alpha 3 bound to the nuclear localization signal of Ran-binding protein 3 Biochem. Biophys. Res. Commun., 491, 2017
5YU4	Structural basis for recognition of L-lysine, L-ornithine, and L-2,4-diamino butyric acid by lysine cyclodeaminase 分子名称: 2,4-DIAMINOBUTYRIC ACID, Lysine cyclodeaminase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Min, K.J, Yoon, H.J, Matsuura, A, Kim, Y.H, Lee, H.H. 登録日 2017-11-20 公開日 2018-05-02 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.144 Å) 主引用文献 Structural Basis for Recognition of L-lysine, L-ornithine, and L-2,4-diamino Butyric Acid by Lysine Cyclodeaminase. Mol. Cells, 41, 2018
5XVC	[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in a ferricyanide-oxidized condition 分子名称: DI(HYDROXYETHYL)ETHER, FE3-S4 CLUSTER, FE4-S4-O CLUSTER, ... 著者 Nishikawa, K, Matsuura, H, Muhd Noor, N.D, Tai, H, Hirota, S, Kim, J, Kang, J, Tateno, M, Yoon, K.S, Ogo, S, Shomura, Y, Higuchi, Y. 登録日 2017-06-27 公開日 2018-06-27 最終更新日 2019-07-10 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Redox-dependent conformational changes of a proximal [4Fe-4S] cluster in Hyb-type [NiFe]-hydrogenase to protect the active site from O2. Chem.Commun.(Camb.), 54, 2018
5XW4	Crystal structure of budding yeast Cdc14p (wild type) in the apo state 分子名称: Tyrosine-protein phosphatase CDC14 著者 Kobayashi, J, Matsuura, Y. 登録日 2017-06-29 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure and dimerization of the catalytic domain of the protein phosphatase Cdc14p, a key regulator of mitotic exit in Saccharomyces cerevisiae Protein Sci., 26, 2017
5YU3	Structural basis for recognition of L-lysine, L-ornithine, and L-2,4-diamino butyric acid by lysine cyclodeaminase 分子名称: Lysine cyclodeaminase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PROLINE, ... 著者 Min, K.J, Yoon, H.J, Matsuura, A, Kim, Y.H, Lee, H.H. 登録日 2017-11-20 公開日 2018-05-02 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Structural Basis for Recognition of L-lysine, L-ornithine, and L-2,4-diamino Butyric Acid by Lysine Cyclodeaminase. Mol. Cells, 41, 2018
5YU1	Structural basis for recognition of L-lysine, L-ornithine, and L-2,4-diamino butyric acid by lysine cyclodeaminase 分子名称: (2S)-piperidine-2-carboxylic acid, Lysine cyclodeaminase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Min, K.J, Yoon, H.J, Matsuura, A, Kim, Y.H, Lee, H.H. 登録日 2017-11-20 公開日 2018-05-02 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.923 Å) 主引用文献 Structural Basis for Recognition of L-lysine, L-ornithine, and L-2,4-diamino Butyric Acid by Lysine Cyclodeaminase. Mol. Cells, 41, 2018
5XOJ	Crystal structure of Xpo1p-PKI-Nup42p-Gsp1p-GTP complex 分子名称: Exportin-1, GTP-binding nuclear protein, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Koyama, M, Shirai, N, Matsuura, Y. 登録日 2017-05-29 公開日 2017-08-16 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the Xpo1p nuclear export complex bound to the SxFG/PxFG repeats of the nucleoporin Nup42p Genes Cells, 22, 2017
5XW5	Crystal structure of budding yeast Cdc14p (C283S) bound to a Swi6p phosphopeptide 分子名称: Regulatory protein SWI6, SULFATE ION, Tyrosine-protein phosphatase CDC14 著者 Kobayashi, J, Matsuura, Y. 登録日 2017-06-29 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure and dimerization of the catalytic domain of the protein phosphatase Cdc14p, a key regulator of mitotic exit in Saccharomyces cerevisiae Protein Sci., 26, 2017
5X8N	Crystal structure of mouse importin-alpha1 bound to the nuclear localization signal of Epstein-Barr virus EBNA-LP protein 分子名称: Epstein-Barr nuclear antigen leader protein, Importin subunit alpha-1 著者 Nakada, R, Matsuura, Y. 登録日 2017-03-03 公開日 2017-04-19 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal structure of importin-alpha bound to the nuclear localization signal of Epstein-Barr virus EBNA-LP protein Protein Sci., 26, 2017
5ZGO	Crystal structure of APRT2 from Thermus thermophilus HB8 分子名称: Adenine phosphoribosyltransferase 著者 Kunishima, N, Naitow, H, Matsuura, Y. 登録日 2018-03-09 公開日 2019-03-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural and functional characterization of thermostable biocatalysts for the synthesis of 6-aminopurine nucleoside-5'-monophospate analogues. Bioresour. Technol., 276, 2019

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