PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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6O3M	Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-02-26 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.97 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6OTR	Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Pavelich, I.P, Hoffer, E.D, Maehigashi, T, Dunham, C.M. 登録日 2019-05-03 公開日 2019-08-21 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability. Nucleic Acids Res., 47, 2019
6OXI	Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Pavelich, I.J, Hoffer, E.D, Maehigashi, T, Dunham, C.M. 登録日 2019-05-13 公開日 2019-08-21 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.495 Å) 主引用文献 Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability. Nucleic Acids Res., 47, 2019
5U5C	Coiled Coil Peptide Metal Coordination Framework: Tetramer Fold 分子名称: COPPER (II) ION, Designed tetrameric coiled coil peptide with one terpyridine side chain, HEXANE-1,6-DIOL 著者 Tavenor, N.A, Murnin, M.J, Horne, W.S. 登録日 2016-12-06 公開日 2017-02-22 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Supramolecular Metal-Coordination Polymers, Nets, and Frameworks from Synthetic Coiled-Coil Peptides. J. Am. Chem. Soc., 139, 2017
5XUZ	Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (CCCA PAM) 分子名称: 1,2-ETHANEDIOL, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*CP*CP*CP*A)-3'), ... 著者 Yamano, T, Nishimasu, H, Ishitani, R, Nureki, O. 登録日 2017-06-26 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1. Mol. Cell, 67, 2017
1ZEV	Crystal Structure of a Pathogenic RNA: CUG Repeats 分子名称: 5'-R(*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*G)-3' 著者 Mooers, B.H, Logue, J.S, Berglund, J.A. 登録日 2005-04-19 公開日 2005-10-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 The structural basis of myotonic dystrophy from the crystal structure of CUG repeats. Proc.Natl.Acad.Sci.Usa, 102, 2005
4UX5	Structure of DNA complex of PCG2 分子名称: 5'-D(*CP*AP*AP*TP*GP*AP*CP*GP*CP*GP*TP*AP*AP*GP)-3', 5'-D(*CP*TP*TP*AP*CP*GP*CP*GP*TP*CP*AP*TP*TP*GP)-3', TRANSCRIPTION FACTOR MBP1 著者 Liu, J, Huang, J, Zhao, Y, Liu, H, Wang, D, Yang, J, Zhao, W, Taylor, I.A, Peng, Y. 登録日 2014-08-19 公開日 2015-01-14 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural Basis of DNA Recognition by Pcg2 Reveals a Novel DNA Binding Mode for Winged Helix-Turn-Helix Domains. Nucleic Acids Res., 43, 2015
7SD0	Cryo-EM structure of the SHOC2:PP1C:MRAS complex 分子名称: Leucine-rich repeat protein SHOC-2, MAGNESIUM ION, MANGANESE (II) ION, ... 著者 Liau, N.P.D, Johnson, M.C, Hymowitz, S.G, Sudhamsu, J. 登録日 2021-09-29 公開日 2022-04-20 最終更新日 2023-11-29 実験手法 ELECTRON MICROSCOPY (2.95 Å) 主引用文献 Structural basis for SHOC2 modulation of RAS signalling. Nature, 609, 2022
4V4R	Crystal structure of the whole ribosomal complex. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Petry, S, Brodersen, D.E, Murphy IV, F.V, Dunham, C.M, Selmer, M, Tarry, M.J, Kelley, A.C, Ramakrishnan, V. 登録日 2005-09-30 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (5.9 Å) 主引用文献 Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon. Cell(Cambridge,Mass.), 123, 2005
4V83	Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. 分子名称: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S. 登録日 2010-12-13 公開日 2014-07-09 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome. Proc.Natl.Acad.Sci.USA, 108, 2011
4V4T	Crystal structure of the whole ribosomal complex with a stop codon in the A-site. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Petry, S, Brodersen, D.E, Murphy IV, F.V, Dunham, C.M, Selmer, M, Tarry, M.J, Kelley, A.C, Ramakrishnan, V. 登録日 2005-10-12 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (6.46 Å) 主引用文献 Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon. Cell(Cambridge,Mass.), 123, 2005
7SU3	CryoEM structure of DNA-PK complex VII 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*AP*GP*CP*AP*GP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*TP*CP*TP*AP*CP*TP*GP*CP*TP*TP*CP*GP*AP*TP*AP*TP*CP*G)-3'), ... 著者 Chen, X, Liu, L, Gellert, M, Yang, W. 登録日 2021-11-16 公開日 2022-01-12 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Autophosphorylation transforms DNA-PK from protecting to processing DNA ends. Mol.Cell, 82, 2022
4X66	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Demirci, H, Chen, J, Choi, J, Soltis, M, Puglisi, J.D. 登録日 2014-12-06 公開日 2015-11-18 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (3.446 Å) 主引用文献 N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics. Nat.Struct.Mol.Biol., 23, 2016
7SSW	Late translocation intermediate with EF-G dissociated (Structure VI) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSN	Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SS9	Late translocation intermediate with EF-G partially dissociated (Structure V) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Loveland, A.B, Gamper, H.B, Hou, Y, Korostelev, A.A. 登録日 2021-11-10 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7ST6	Pre translocation, non-rotated 70S ribosome (Structure I) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-12 公開日 2022-02-23 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7ST7	Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-12 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7ST2	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSL	Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSO	Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7M1L	Crystal structure of Pseudomonas aeruginosa ClpP2 分子名称: ATP-dependent Clp protease proteolytic subunit, PHOSPHATE ION 著者 Hall, B.M, Grant, R.A, Baker, T.A, Sauer, R.T. 登録日 2021-03-13 公開日 2021-03-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 ClpP1P2 peptidase activity promotes biofilm formation in Pseudomonas aeruginosa. Mol.Microbiol., 115, 2021
4V5B	Structure of PDF binding helix in complex with the ribosome. 分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Bingel-Erlenmeyer, R, Kohler, R, Kramer, G, Sandikci, A, Antolic, S, Maier, T, Schaffitzel, C, Wiedmann, B, Bukau, B, Ban, N. 登録日 2007-11-22 公開日 2014-07-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.74 Å) 主引用文献 A Peptide Deformylase-Ribosome Complex Reveals Mechanism of Nascent Chain Processing. Nature, 452, 2008
3CQZ	Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin 分子名称: ALPHA-AMANITIN, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, ... 著者 Kaplan, C.D, Larsson, K.-M, Kornberg, R.D. 登録日 2008-04-03 公開日 2008-07-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The RNA Polymerase II Trigger Loop Functions in Substrate Selection and is Directly Targeted by Alpha-Amanitin. Mol.Cell, 30, 2008
4WZV	Crystal structure of a hydroxamate based inhibitor EN140 in complex with the MMP-9 catalytic domain 分子名称: (2R)-4-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-N-hydroxy-2-{[(4'-methoxybiphenyl-4-yl)sulfonyl](propan-2-yloxy)amino}butanamide, 1,2-ETHANEDIOL, AZIDE ION, ... 著者 Stura, E.A, Vera, L, Cassar-Lajeunesse, E, Nuti, E, Dive, V, Rossello, A. 登録日 2014-11-20 公開日 2015-08-26 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 N-O-Isopropyl Sulfonamido-Based Hydroxamates as Matrix Metalloproteinase Inhibitors: Hit Selection and in Vivo Antiangiogenic Activity. J.Med.Chem., 58, 2015

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