PDB: 2906 件ウェブページステータス検索Chemie searchBIRD

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4LF5	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, HYGROMYCIN B, MAGNESIUM ION, ... 著者 Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-06-26 公開日 2014-07-02 実験手法 X-RAY DIFFRACTION (3.753 Å) 主引用文献 Crystal Structure of 30S ribosomal subunit from Thermus thermophilus To be Published, 2013
4LEL	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-25 公開日 2014-08-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.90000033 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4LFZ	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-27 公開日 2014-08-06 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.92000055 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
5FDV	Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Seefeldt, A.C, Graf, M, Perebaskine, N, Nguyen, F, Arenz, S, Mardirossian, M, Scocchi, M, Wilson, D.N, Innis, C.A. 登録日 2015-12-16 公開日 2016-01-27 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome. Nucleic Acids Res., 44, 2016
5FLX	Mammalian 40S HCV-IRES complex 分子名称: 18S RRNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ... 著者 Yamamoto, H, Collier, M, Loerke, J, Ismer, J, Schmidt, A, Hilal, T, Sprink, T, Yamamoto, K, Mielke, T, Burger, J, Shaikh, T.R, Dabrowski, M, Hildebrand, P.W, Scheerer, P, Spahn, C.M.T. 登録日 2015-10-28 公開日 2015-12-23 最終更新日 2017-08-30 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA. Embo J., 34, 2015
4L29	Structure of wtMHC class I with NY-ESO1 double mutant 分子名称: Beta-2-microglobulin, CHLORIDE ION, GLYCEROL, ... 著者 Halabelian, L, Giorgetti, S, Bellotti, V, Bolognesi, M, Ricagno, S. 登録日 2013-06-04 公開日 2013-12-25 最終更新日 2014-02-26 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 Class I Major Histocompatibility Complex, the Trojan Horse for Secretion of Amyloidogenic beta 2-Microglobulin. J.Biol.Chem., 289, 2014
4LF8	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, MAGNESIUM ION, PAROMOMYCIN, ... 著者 Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-06-26 公開日 2014-07-02 実験手法 X-RAY DIFFRACTION (3.1484 Å) 主引用文献 Crystal Structure of 30S ribosomal subunit from Thermus thermophilus to be published, 2013
5FT8	Crystal structure of the complex between the cysteine desulfurase CsdA and the sulfur-acceptor CsdE in the persulfurated state at 2.50 Angstroem resolution 分子名称: Cysteine desulfurase CsdA, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Fernandez, F.J, Arda, A, Lopez-Estepa, M, Aranda, J, Penya-Soler, E, Garces, F, Round, A, Campos-Oliva, R, Bruix, M, Coll, M, Tunon, I, Jimenez-Barbero, J, Vega, M.C. 登録日 2016-01-11 公開日 2016-11-23 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Mechanism of Sulfur Transfer Across Protein-Protein Interfaces: The Cysteine Desulfurase Model System Acs Catalysis, 6, 2016
4LF4	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, MAGNESIUM ION, ... 著者 Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-06-26 公開日 2014-07-02 実験手法 X-RAY DIFFRACTION (3.3421 Å) 主引用文献 Crystal Structure of 30S ribosomal subunit from Thermus thermophilus To be Published, 2013
4LFB	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, MAGNESIUM ION, NEOMYCIN, ... 著者 Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-06-26 公開日 2014-07-02 実験手法 X-RAY DIFFRACTION (3.009 Å) 主引用文献 Crystal Structure of 30S ribosomal subunit from Thermus thermophilus to be published, 2013
5FVB	CRYSTAL STRUCTURE OF PHORMIDIUM C-PHYCOERYTHRIN AT PH 5.0 分子名称: C-PHYCOERYTHRIN ALPHA SUBUNIT, C-PHYCOERYTHRIN BETA SUBUNIT, GLYCEROL, ... 著者 Kumar, V, Sonani, R.R, Sharma, M, Gupta, G.D, Madamwar, D. 登録日 2016-02-05 公開日 2016-06-29 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Crystal Structure Analysis of C-Phycoerythrin from Marine Cyanobacterium Phormidium Sp. A09Dm. Photosynth.Res., 129, 2016
4LFC	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, MAGNESIUM ION, POTASSIUM ION, ... 著者 Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-06-26 公開日 2014-07-02 実験手法 X-RAY DIFFRACTION (3.602 Å) 主引用文献 to be published, 2013
4LNT	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-07-12 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (2.94 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
5E81	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Khusainov, I, Yusupov, M, Yusupova, G. 登録日 2015-10-13 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code. Nat Commun, 7, 2016
4LF9	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, MAGNESIUM ION, ... 著者 Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-06-26 公開日 2014-07-02 実験手法 X-RAY DIFFRACTION (3.2811 Å) 主引用文献 Crystal Structure of 30S ribosomal subunit from Thermus thermophilus to be published, 2013
4JI8	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ... 著者 Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-03-05 公開日 2013-11-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.742 Å) 主引用文献 The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
5E7K	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Khusainov, I, Yusupov, M, Yusupova, G. 登録日 2015-10-12 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code. Nat Commun, 7, 2016
5DM7	Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A 分子名称: 23S ribosomal RNA, 50S ribosomal protein L1, 50S ribosomal protein L11, ... 著者 Kaminishi, T, Schedlbauer, A, Ochoa-Lizarralde, B, Connell, S.R, Fucini, P. 登録日 2015-09-08 公開日 2015-11-11 最終更新日 2015-11-25 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A. Nucleic Acids Res., 43, 2015
5E7C	Macromolecular diffractive imaging using imperfect crystals - Bragg data 分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... 著者 Ayyer, K, Yefanov, O, Oberthuer, D, Roy-Chowdhury, S, Galli, L, Mariani, V, Basu, S, Coe, J, Conrad, C.E, Fromme, R, Schaffner, A, Doerner, K, James, D, Kupitz, C, Metz, M, Nelson, G, Xavier, P.L, Beyerlein, K.R, Schmidt, M, Sarrou, I, Spence, J.C.H, Weierstall, U, White, T.A, Yang, J.-H, Zhao, Y, Liang, M, Aquila, A, Hunter, M.S, Robinson, J.S, Koglin, J.E, Boutet, S, Fromme, P, Barty, A, Chapman, H.N. 登録日 2015-10-12 公開日 2016-02-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (4.5 Å) 主引用文献 Macromolecular diffractive imaging using imperfect crystals. Nature, 530, 2016
4JI0	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, MAGNESIUM ION, ZINC ION, ... 著者 Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-03-05 公開日 2013-11-06 最終更新日 2013-12-04 実験手法 X-RAY DIFFRACTION (3.492 Å) 主引用文献 The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
5DKP	Crystal Structure of N. meningitidis ClpP in complex with agonist ADEP A54556. 分子名称: ATP-dependent Clp protease proteolytic subunit, POTASSIUM ION, SODIUM ION, ... 著者 Goodreid, J.D, Janetzko, J, Santa Maria Jr, J.P, Wong, K, Leung, E, Eger, B.T, Bryson, S, Pai, E.F, Gray-Owen, S.D, Walker, S, Houry, W.A, Batey, R.A. 登録日 2015-09-03 公開日 2016-01-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.381 Å) 主引用文献 Development and Characterization of Potent Cyclic Acyldepsipeptide Analogues with Increased Antimicrobial Activity. J.Med.Chem., 59, 2016
4LSK	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-07-22 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.48000622 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
5DOX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Polikanov, Y.S, Starosta, A.L, Juette, M.F, Altman, R.B, Terry, D.S, Lu, W, Burnett, B.J, Dinos, G, Reynolds, K, Blanchard, S.C, Steitz, T.A, Wilson, D.N. 登録日 2015-09-11 公開日 2015-12-30 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A. Mol.Cell, 58, 2015
5GAG	RNC in complex with SRP-SR in the closed state 分子名称: 1A9L SS, 23S rRNA, 50S ribosomal protein L10, ... 著者 Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N. 登録日 2015-11-26 公開日 2016-01-27 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon. Nat Commun, 7, 2016
5FCJ	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Mailliot, J, Garreau de Loubresse, N, Yusupova, G, Dinman, J.D, Yusupov, M. 登録日 2015-12-15 公開日 2016-05-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency. J.Mol.Biol., 428, 2016

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