PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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6AEB	Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) 分子名称: DNA (25-MER), DNA (5'-D(*AP*AP*AP*AP*AP*GP*TP*AP*TP*TP*G)-3'), DNA Nuclease, ... 著者 Guo, M, Ren, K, Zhu, Y, Huang, Z. 登録日 2018-08-04 公開日 2019-03-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.004 Å) 主引用文献 Structural insights into a high fidelity variant of SpCas9. Cell Res., 29, 2019
8SJP	[3T15] Self-assembling DNA motif with 15 base pairs between junctions and P32 symmetry 分子名称: DNA (5'-D(*CP*AP*GP*CP*TP*GP*AP*CP*CP*TP*GP*AP*CP*TP*CP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*TP*CP*CP*TP*GP*TP*GP*GP*TP*CP*AP*GP*C)-3'), DNA (5'-D(P*CP*GP*AP*TP*GP*GP*AP*CP*AP*GP*GP*GP*G)-3'), ... 著者 Vecchioni, S, Janowski, J, Sha, R, Ohayon, Y.P. 登録日 2023-04-18 公開日 2024-04-24 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (5.22 Å) 主引用文献 Engineering tertiary chirality in helical biopolymers. Proc.Natl.Acad.Sci.USA, 121, 2024
8SZ5	[2T5] Self-assembling DNA motif with 5 base pairs between junctions and P32 symmetry 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*G)-3'), DNA (5'-D(P*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(P*CP*AP*CP*GP*T)-3'), ... 著者 Vecchioni, S, Janowski, J, Sha, R, Ohayon, Y.P. 登録日 2023-05-26 公開日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Engineering tertiary chirality in helical biopolymers. Proc.Natl.Acad.Sci.USA, 121, 2024
3VAX	Crystal structure of DndA from streptomyces lividans 分子名称: PYRIDOXAL-5'-PHOSPHATE, Putative uncharacterized protein dndA 著者 Zhang, Z, Chen, F, Lin, K, Wu, G. 登録日 2011-12-30 公開日 2013-01-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of the cysteine desulfurase DndA from Streptomyces lividans which is involved in DNA phosphorothioation Plos One, 7, 2012
6A5M	Crystal structure of Arabidopsis thaliana SUVH6 in complex with SAM, form 2 分子名称: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6, S-ADENOSYLMETHIONINE, ... 著者 Li, X, Du, J. 登録日 2018-06-24 公開日 2018-08-29 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.301 Å) 主引用文献 Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6A5K	Crystal structure of Arabidopsis thaliana SUVH6 in complex with SAM, form 1 分子名称: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6, S-ADENOSYLMETHIONINE, ... 著者 Li, X, Du, J. 登録日 2018-06-24 公開日 2018-08-29 最終更新日 2018-09-26 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7YT9	crystal structure of AGD1-4 of Arabidopsis AGDP3 分子名称: AGD1-4 of Arabidopsis AGDP3 著者 Zhou, X, Du, J. 登録日 2022-08-13 公開日 2022-10-12 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The H3K9me2-binding protein AGDP3 limits DNA methylation and transcriptional gene silencing in Arabidopsis. J Integr Plant Biol, 64, 2022
7YTA	crystal structure of NtAGDP3 AGD1-2 in complex with an H3K9me2 peptide 分子名称: AGDP3 AGD1-2, H3(1-15)K9me2 peptide 著者 Zhou, X, Du, J. 登録日 2022-08-13 公開日 2022-10-12 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 The H3K9me2-binding protein AGDP3 limits DNA methylation and transcriptional gene silencing in Arabidopsis. J Integr Plant Biol, 64, 2022
2LXQ	Monomeric PilE G-Quadruplex DNA from Neisseria Gonorrhoeae 分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*GP*GP*GP*GP*AP*AP*T)-3') 著者 Kuryavyi, V.V, Patel, D.J. 登録日 2012-08-30 公開日 2012-11-28 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 RecA-Binding pilE G4 Sequence Essential for Pilin Antigenic Variation Forms Monomeric and 5' End-Stacked Dimeric Parallel G-Quadruplexes. Structure, 20, 2012
8RW2	Structure of a chair-type antiparallel quadruplex-duplex hybrid at pH 6 分子名称: DNA (33-MER) 著者 Vianney, Y.M, Weisz, K. 登録日 2024-02-02 公開日 2024-03-27 最終更新日 2024-06-05 実験手法 SOLUTION NMR 主引用文献 A pH-Responsive Topological Switch Based on a DNA Quadruplex-Duplex Hybrid. Chemistry, 30, 2024
8S1W	Structure of a quadruplex-duplex hybrid with a (-pd+l) loop progression 分子名称: DNA (33-MER) 著者 Vianney, Y.M, Jana, J, Weisz, K. 登録日 2024-02-16 公開日 2024-03-27 最終更新日 2024-06-05 実験手法 SOLUTION NMR 主引用文献 A pH-Responsive Topological Switch Based on a DNA Quadruplex-Duplex Hybrid. Chemistry, 30, 2024
7W0X	Tetrameric antiparallel G-quadruplex formed by natural human telomeric sequence 分子名称: DNA (5'-D(*GP*GP*GP*TP*TP*A)-3') 著者 Jing, H.T, Fu, W.Q. 登録日 2021-11-18 公開日 2022-01-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR structure of an alternating antiparallel tetrameric G-quadruplex assembled by the single-repeat of human telomeric DNA d(GGGTTA) To Be Published
3L6V	Crystal Structure of the Xanthomonas campestris Gyrase A C-terminal Domain 分子名称: DNA gyrase subunit A 著者 Hsieh, T.J, Yen, T.J, Lin, T.S, Chang, H.T, Huang, S.Y, Farh, L, Chan, N.L. 登録日 2009-12-26 公開日 2010-03-09 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Twisting of the DNA binding surface by a beta-strand-bearing proline modulates DNA gyrase activity To be Published
2R9A	Crystal structure of human XLF 分子名称: Non-homologous end-joining factor 1 著者 Andres, S.N, Junop, M.S. 登録日 2007-09-12 公開日 2008-01-01 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of Human XLF: A Twist in Nonhomologous DNA End-Joining Mol.Cell, 28
7YF7	NMR solution structures of the DNA minidumbbell formed by two ATTTT repeats 分子名称: DNA (5'-D(*AP*TP*TP*TP*TP*AP*TP*TP*TP*T)-3'), SODIUM ION 著者 Wan, L, Li, J, Guo, P. 登録日 2022-07-07 公開日 2023-01-11 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution Nuclear Magnetic Resonance Structures of ATTTT and ATTTC Pentanucleotide Repeats Associated with SCA37 and FAMEs. Acs Chem Neurosci, 14, 2023
7EXX	The structure of DndG 分子名称: DNA phosphorothioation-dependent restriction protein DptG, SODIUM ION 著者 Wu, D, Wang, L. 登録日 2021-05-28 公開日 2022-06-01 最終更新日 2022-12-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The functional coupling between restriction and DNA phosphorothioate modification systems underlying the DndFGH restriction complex Nat Catal, 2022
7F6D	Reconstruction of the HerA-NurA complex from Deinococcus radiodurans 分子名称: HerA, NurA 著者 Xu, Y, Xu, L, Guo, J, Hua, Y, Zhao, Y. 登録日 2021-06-25 公開日 2022-06-29 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.85 Å) 主引用文献 Mechanisms of helicase activated DNA end resection in bacteria. Structure, 30, 2022
1UQD	SELF-COMPLEMENTARY DNA 5'-D(CGATCG)2, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') 著者 Lam, S.L, Au-Yeung, S.C.F. 登録日 1996-06-26 公開日 1997-01-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids. J.Mol.Biol., 266, 1997
1UQE	SELF-COMPLEMENTARY DNA 5'-D(CGTACG)2, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') 著者 Lam, S.L, Au-Yeung, S.C.F. 登録日 1996-06-26 公開日 1997-01-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids. J.Mol.Biol., 266, 1997
3Q61	3'-Fluoro Hexitol Nucleic Acid DNA Structure 分子名称: DNA (5'-D(*GP*CP*GP*TP*AP*(F3H)P*AP*CP*GP*C)-3') 著者 Seth, P.R, Allerson, C.R, Prakash, T.P, Siwkowski, A, Berdeja, A, Yu, J, Pallan, P.S, Watt, A.T, Gaus, H, Bhat, B, Egli, M, Swayze, E.E. 登録日 2010-12-30 公開日 2012-01-18 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 Synthesis, improved antisense activity and structural rationale for the divergent RNA affinities of 3'-fluoro hexitol nucleic acid (FHNA and Ara-FHNA) modified oligonucleotides. J.Am.Chem.Soc., 133, 2011
3Q5C	Crystal structure of four-way junction with sticky end 分子名称: DNA (5'-D(*CP*GP*GP*CP*GP*GP*CP*CP*GP*C)-3') 著者 Venkadesh, S, Mandal, P.K, Gautham, N. 登録日 2010-12-28 公開日 2011-05-18 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice Biochem.Biophys.Res.Commun., 407, 2011
1UQC	SELF-COMPLEMENTARY DNA 5'-D(CACGTG)2, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*AP*CP*GP*TP*G)-3') 著者 Lam, S.L, Au-Yeung, S.C.F. 登録日 1996-06-26 公開日 1997-01-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids. J.Mol.Biol., 266, 1997
1UQG	SELF-COMPLEMENTARY DNA 5'-D(CGCGCG)2, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') 著者 Lam, S.L, Au-Yeung, S.C.F. 登録日 1996-06-26 公開日 1997-01-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids. J.Mol.Biol., 266, 1997
1UQF	SELF-COMPLEMENTARY DNA 5'-D(CGGCCG)2, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*GP*GP*CP*CP*G)-3') 著者 Lam, S.L, Au-Yeung, S.C.F. 登録日 1996-06-26 公開日 1997-01-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids. J.Mol.Biol., 266, 1997
1UQA	SELF-COMPLEMENTARY DNA 5'-D(CATATG)2, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*AP*TP*AP*TP*G)-3') 著者 Lam, S.L, Au-Yeung, S.C.F. 登録日 1996-06-26 公開日 1997-01-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids. J.Mol.Biol., 266, 1997

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