PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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6W46	Valine-Containing Collagen Peptide 分子名称: 1,2-ETHANEDIOL, Collagen-like peptide 著者 Chenoweth, D.M, Melton, S.D. 登録日 2020-03-10 公開日 2020-08-12 最終更新日 2021-07-28 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Rules for the design of aza-glycine stabilized triple-helical collagen peptides. Chem Sci, 11, 2020
7NSJ	55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*) 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S16, ... 著者 Kummer, E, Schubert, K, Ban, N. 登録日 2021-03-07 公開日 2021-06-02 最終更新日 2021-12-15 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis of translation termination, rescue, and recycling in mammalian mitochondria. Mol.Cell, 81, 2021
7O4J	Yeast RNA polymerase II transcription pre-initiation complex (consensus) 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-06 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
7O75	Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-13 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
7O73	Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-12 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
7O72	Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-12 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
5JC8	Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia xenovorans 分子名称: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2016-04-14 公開日 2016-05-11 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia xenovorans to be published
5JI3	HslUV complex 分子名称: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, ATP-dependent protease ATPase subunit HslU, ATP-dependent protease subunit HslV 著者 Grant, R.A, Sauer, R.T, Schmitz, K.R, Baytshtok, V. 登録日 2016-04-21 公開日 2016-12-07 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A Structurally Dynamic Region of the HslU Intermediate Domain Controls Protein Degradation and ATP Hydrolysis. Structure, 24, 2016
7AOE	Schizosaccharomyces pombe RNA polymerase I (elongation complex) 分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit rpa1, DNA-directed RNA polymerase I subunit rpa14, ... 著者 Heiss, F, Daiss, J, Becker, P, Engel, C. 登録日 2020-10-14 公開日 2021-02-24 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Conserved strategies of RNA polymerase I hibernation and activation. Nat Commun, 12, 2021
6VID	The Crystal Structure of Aps Domain-Swapped Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F Variant of HCRBPII 分子名称: ACETATE ION, GLYCEROL, Retinol-binding protein 2 著者 Ghanbarpour, A, Geiger, J. 登録日 2020-01-12 公開日 2020-08-19 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 The Crystal Structure of Apo Domain Swapped Trimer Q108K:K40D:T53A:R58L:Q38F:Q4F variant of HCRBPII To Be Published
6VYP	Crystal structure of the LSD1/CoREST histone demethylase bound to its nucleosome substrate 分子名称: DNA (191-MER), FLAVIN-ADENINE DINUCLEOTIDE, Histone H2A type 1, ... 著者 Kim, S, Zhu, J, Eek, P, Yennawar, N, Song, T. 登録日 2020-02-27 公開日 2020-05-27 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (4.99 Å) 主引用文献 Crystal Structure of the LSD1/CoREST Histone Demethylase Bound to Its Nucleosome Substrate. Mol.Cell, 78, 2020
6VYR	Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R.H. 登録日 2020-02-27 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
4V6R	Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-12-08 公開日 2014-07-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (11.5 Å) 主引用文献 Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
4V76	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (17 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V8P	T.thermophila 60S ribosomal subunit in complex with initiation factor 6. 分子名称: 26S RRNA, 5.8S RRNA, 5S RRNA, ... 著者 Klinge, S, Voigts-Hoffmann, F, Leibundgut, M, Arpagaus, S, Ban, N. 登録日 2011-09-14 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.52 Å) 主引用文献 Crystal Structure of the Eukaryotic 60S Ribosomal Subunit in Complex with Initiation Factor 6. Science, 334, 2011
4V8Z	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex 分子名称: 18S RIBOSOMAL RNA, 25S RIBOSOMAL RNA, 40S RIBOSOMAL PROTEIN S0-A, ... 著者 Fernandez, I.S, Bai, X.C, Hussain, T, Kelley, A.C, Lorsch, J.R, Ramakrishnan, V, Scheres, S.H.W. 登録日 2013-07-20 公開日 2014-07-09 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (6.6 Å) 主引用文献 Molecular architecture of a eukaryotic translational initiation complex. Science, 342, 2013
6EU0	RNA Polymerase III open pre-initiation complex (OC-PIC) 分子名称: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... 著者 Abascal-Palacios, G, Ramsay, E.P, Beuron, F, Morris, E, Vannini, A. 登録日 2017-10-27 公開日 2018-01-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural basis of RNA polymerase III transcription initiation. Nature, 553, 2018
5B43	Crystal structure of Acidaminococcus sp. Cpf1 in complex with crRNA and target DNA 分子名称: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cpf1, DNA (34-MER), ... 著者 Yamano, T, Nishimasu, H, Hirano, H, Nakane, T, Ishitani, R, Nureki, O. 登録日 2016-03-30 公開日 2016-05-04 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA Cell, 165, 2016
6F44	RNA Polymerase III closed complex CC2. 分子名称: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... 著者 Vorlaender, M.K, Khatter, H, Wetzel, R, Hagen, W.J.H, Mueller, C.W. 登録日 2017-11-29 公開日 2018-01-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Molecular mechanism of promoter opening by RNA polymerase III. Nature, 553, 2018
6FF4	human Bact spliceosome core structure 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, BUD13 homolog, Cell division cycle 5-like protein, ... 著者 Haselbach, D, Komarov, I, Agafonov, D, Hartmuth, K, Graf, B, Kastner, B, Luehrmann, R, Stark, H. 登録日 2018-01-03 公開日 2018-08-29 最終更新日 2020-10-07 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and Conformational Dynamics of the Human Spliceosomal BactComplex. Cell, 172, 2018
7OF4	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). 分子名称: 16S ribosomal RNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Hillen, H.S, Lavdovskaia, E, Nadler, F, Hanitsch, E, Linden, A, Bohnsack, K.E, Urlaub, H, Richter-Dennerlein, R. 登録日 2021-05-04 公開日 2021-06-09 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural basis of GTPase-mediated mitochondrial ribosome biogenesis and recycling. Nat Commun, 12, 2021
3J8G	Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit 分子名称: 23S rRNA, 50S ribosomal protein L1, 50S ribosomal protein L11, ... 著者 Zhang, X, Yan, K, Zhang, Y, Li, N, Ma, C, Li, Z, Zhang, Y, Feng, B, Liu, J, Sun, Y, Xu, Y, Lei, J, Gao, N. 登録日 2014-10-24 公開日 2014-11-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (5 Å) 主引用文献 Structural insights into the function of a unique tandem GTPase EngA in bacterial ribosome assembly Nucleic Acids Res., 2014
5XXB	Large subunit of Toxoplasma gondii ribosome 分子名称: 25S RNA, 5.8S RNA, 5S RNA, ... 著者 Li, Z, Guo, Q, Zheng, L, Ji, Y, Xie, Y, Lai, D, Lun, Z, Suo, X, Gao, N. 登録日 2017-07-03 公開日 2017-08-30 最終更新日 2017-10-18 実験手法 ELECTRON MICROSCOPY (3.17 Å) 主引用文献 Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii Cell Res., 27, 2017
5X6F	Crystal structure of Phosphopantetheine adenylyltransferase from Pseudomonas aeruginosa 分子名称: GLYCEROL, ISOPROPYL ALCOHOL, Phosphopantetheine adenylyltransferase 著者 Mondal, A, Chatterjee, R, Datta, S. 登録日 2017-02-21 公開日 2018-02-14 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.593 Å) 主引用文献 Umbrella Sampling and X-ray Crystallographic Analysis Unveil an Arg-Asp Gate Facilitating Inhibitor Binding Inside Phosphopantetheine Adenylyltransferase Allosteric Cleft. J Phys Chem B, 122, 2018
5X8R	Structure of the 30S small subunit of chloroplast ribosome from spinach 分子名称: 16S rRNA, 30S ribosomal protein S1, chloroplastic, ... 著者 Ahmed, T, Shi, J, Bhushan, S. 登録日 2017-03-03 公開日 2017-06-07 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation Nucleic Acids Res., 45, 2017

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