PDB: 7404 件ウェブページステータス検索Chemie searchBIRD

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7OID	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2021-05-11 公開日 2021-09-15 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 A distinct assembly pathway of the human 39S late pre-mitoribosome. Nat Commun, 12, 2021
7OIE	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2021-05-11 公開日 2021-09-15 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 A distinct assembly pathway of the human 39S late pre-mitoribosome. Nat Commun, 12, 2021
7OI8	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2021-05-11 公開日 2021-09-15 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 A distinct assembly pathway of the human 39S late pre-mitoribosome. Nat Commun, 12, 2021
8EV6	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs 分子名称: (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Seely, S.M, Gagnon, M.G. 登録日 2022-10-19 公開日 2023-08-09 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.946 Å) 主引用文献 Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome. Nat Commun, 14, 2023
7OI6	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2021-05-11 公開日 2021-10-13 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 A distinct assembly pathway of the human 39S late pre-mitoribosome. Nat Commun, 12, 2021
6Z6L	Cryo-EM structure of human CCDC124 bound to 80S ribosomes 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. 登録日 2020-05-28 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
4V90	Thermus thermophilus Ribosome 分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Chen, Y, Feng, S, Kumar, V, Ero, R, Gao, Y.G. 登録日 2014-02-22 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structure of EF-G-ribosome complex in a pretranslocation state. Nat. Struct. Mol. Biol., 20, 2013
3JCD	Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Zhang, D, Yan, K, Liu, G, Song, G, Luo, J, Shi, Y, Cheng, E, Wu, S, Jiang, T, Low, J, Gao, N, Qin, Y. 登録日 2015-12-01 公開日 2016-01-13 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome Nat. Struct. Mol. Biol., 23, 2016
5X8P	Structure of the 70S chloroplast ribosome from spinach 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Ahmed, T, Shi, J, Bhushan, S. 登録日 2017-03-03 公開日 2017-06-14 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation Nucleic Acids Res., 45, 2017
6GZQ	T. thermophilus hibernating 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Flygaard, R.K, Jenner, L.B. 登録日 2018-07-04 公開日 2018-10-24 実験手法 ELECTRON MICROSCOPY (3.28 Å) 主引用文献 Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism. Nat Commun, 9, 2018
8EV7	Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Seely, S.M, Gagnon, M.G. 登録日 2022-10-19 公開日 2023-08-09 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome. Nat Commun, 14, 2023
7Q0F	Structure of Candida albicans 80S ribosome in complex with phyllanthoside 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 3-O-acetyl-2-O-(3-O-acetyl-6-deoxy-beta-D-glucopyranosyl)-6-deoxy-1-O-{[(2R,2'S,3a'R,4''S,5''R,6'S,7a'S)-5''-methyl-4''-{[(2E)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-D-glucopyranose, ... 著者 Zgadzay, Y, Kolosova, O, Stetsenko, A, Jenner, L, Guskov, A, Yusupova, G, Yusupov, M. 登録日 2021-10-14 公開日 2022-05-18 最終更新日 2022-06-08 実験手法 ELECTRON MICROSCOPY (2.64 Å) 主引用文献 E-site drug specificity of the human pathogen Candida albicans ribosome. Sci Adv, 8, 2022
8A3D	Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound 分子名称: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 28S ribosomal RNA, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Faille, A, Warren, A.J, Dent, K.C. 登録日 2022-06-08 公開日 2023-03-08 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (1.67 Å) 主引用文献 The chemical landscape of the human ribosome at 1.67 angstrom resolution. Biorxiv, 2023
1L4S	Solution structure of ribosome associated factor Y 分子名称: Protein yfiA 著者 Ye, K, Serganov, A, Hu, W, Patel, D.J. 登録日 2002-03-05 公開日 2002-12-04 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold. Eur.J.Biochem., 269, 2002
2Z53	Crystal structure of the S211A mutant of the ribosome inactivating protein PDL4 from P. dioica leaves 分子名称: 1,2-ETHANEDIOL, Ribosome-inactivating protein PD-L4 著者 Berisio, R, Ruggiero, A. 登録日 2007-06-27 公開日 2008-02-26 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Atomic resolution (1.1 A) structure of the ribosome-inactivating protein PD-L4 from Phytolacca dioica L. leaves Proteins, 71, 2008
6XHX	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Svetlov, M.S, Syroegin, E.A, Aleksandrova, E.V, Atkinson, G.C, Gregory, S.T, Mankin, A.S, Polikanov, Y.S. 登録日 2020-06-19 公開日 2020-12-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance. Nat.Chem.Biol., 17, 2021
8B2L	Cryo-EM structure of the plant 80S ribosome 分子名称: 18S rRNA, 25S rRNA, 30S ribosomal protein S15, ... 著者 Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R. 登録日 2022-09-14 公開日 2023-08-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution. Nat.Plants, 9, 2023
7UG7	70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B 分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ... 著者 Rundlet, E.J, Wieland, M, Holm, M, Koller, T.O, Blanchard, S.C, Wilson, D.N. 登録日 2022-03-24 公開日 2022-05-18 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 The cyclic octapeptide antibiotic argyrin B inhibits translation by trapping EF-G on the ribosome during translocation. Proc.Natl.Acad.Sci.USA, 119, 2022
6SPC	Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Halfon, Y, Jimenez-Fernande, A, La Ros, R, Espinos, R, Krogh Johansen, H, Matzov, D, Eyal, Z, Bashan, A, Zimmerman, E, Belousoff, M, Molin, S, Yonath, A. 登録日 2019-09-01 公開日 2019-10-16 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (2.95 Å) 主引用文献 Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate. Proc.Natl.Acad.Sci.USA, 116, 2019
1Y69	RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans 分子名称: 23S ribosomal RNA, 50S ribosomal protein L16, 50S ribosomal protein L27, ... 著者 Wilson, D.N, Schluenzen, F, Harms, J.M, Yoshida, T, Ohkubo, T, Albrecht, R, Buerger, J, Kobayashi, Y, Fucini, P. 登録日 2004-12-04 公開日 2005-03-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.33 Å) 主引用文献 X-ray crystallography on ribosome recycling: mechanism of binding and action of RRF on the 50S ribosomal subunit EMBO J., 24, 2005
4V5Y	Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D. 登録日 2007-06-19 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (4.45 Å) 主引用文献 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol., 14, 2007
4V7C	Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Brilot, A.F, Korostelev, A.A, Ermolenko, D.N, Grigorieff, N. 登録日 2013-11-20 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (7.6 Å) 主引用文献 Structure of the ribosome with elongation factor G trapped in the pretranslocation state. Proc.Natl.Acad.Sci.USA, 110, 2013
4V7D	Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Brilot, A.F, Korostelev, A.A, Ermolenko, D.N, Grigorieff, N. 登録日 2013-11-21 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (7.6 Å) 主引用文献 Structure of the ribosome with elongation factor G trapped in the pretranslocation state. Proc.Natl.Acad.Sci.USA, 110, 2013
4V55	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). 分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, 23S rRNA, ... 著者 Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D. 登録日 2007-06-17 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol., 14, 2007
8AYE	E. coli 70S ribosome bound to thermorubin and fMet-tRNA 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Sanyal, S, Parajuli, N.P, Emmerich, A.G. 登録日 2022-09-02 公開日 2023-03-01 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.96 Å) 主引用文献 Antibiotic thermorubin tethers ribosomal subunits and impedes A-site interactions to perturb protein synthesis in bacteria. Nat Commun, 14, 2023

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