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2HSS
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13mer duplex DNA containg an abasic site with beta anomer, averaged structure
分子名称: 5'-D(*CP*CP*AP*AP*AP*GP*(AAB)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'
著者Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J.
登録日2006-07-22
公開日2007-05-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites.
Biochemistry, 46, 2007
2HOU
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Structure ensembles of duplex DNA containing a 4'-oxidized abasic site.
分子名称: 5'-D(*CP*CP*AP*AP*AP*GP*(X4A)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'
著者Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J.
登録日2006-07-16
公開日2007-05-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites.
Biochemistry, 46, 2007
2HSK
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NMR Structure of 13mer Duplex DNA containing an abasic site (Y) in 5'-CCAAAGYACCGGG-3' (10 structures, alpha anomer)
分子名称: 5'-D(*CP*CP*AP*AP*AP*GP*(D1P)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'
著者Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J.
登録日2006-07-21
公開日2007-05-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites.
Biochemistry, 46, 2007
1RO0
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BU of 1ro0 by Molmil
Bifunctional DNA primase/polymerase domain of ORF904 from the archaeal plasmid pRN1- Triple mutant F50M/L107M/L110M SeMet remote
分子名称: ORF904, ZINC ION
著者Lipps, G, Weinzierl, A.O, von Scheven, G, Buchen, C, Cramer, P.
登録日2003-12-01
公開日2004-01-27
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of a bifunctional DNA primase-polymerase
Nat.Struct.Mol.Biol., 11, 2004
1R41
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Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers
分子名称: 5'-D(*GP*CP*GP*CP*GP*(5CM)P*GP*(5CM))-3'
著者Shi, K, Pan, B, Tippin, D, Sundaralingam, M.
登録日2003-10-03
公開日2003-12-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of d(Gm5)CGm5CGCGC) and d(GCGCGm5CGm5C): effects of methylation on alternating DNA octamers.
Acta Crystallogr.,Sect.D, 60, 2004
2HSR
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13mer duplex DNA containing an abasic site with beta anomer
分子名称: 5'-D(*CP*CP*AP*AP*AP*GP*(AAB)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'
著者Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J.
登録日2006-07-22
公開日2007-05-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites.
Biochemistry, 46, 2007
2GZG
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BU of 2gzg by Molmil
Crystal Structure of the E9 DNase Domain with a Mutant Immunity Protein IM9 (Y55F)
分子名称: Colicin-E9, Colicin-E9 immunity protein, PHOSPHATE ION, ...
著者Santi, P.S, Kolade, O.O, Kuhlmann, U.C, Kleanthous, C, Hemmings, A.M.
登録日2006-05-11
公開日2008-03-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of the Complex of the Colicin E9 DNase Domain with a Mutant Immunity Protein, IM9 (Y55F)
To be Published
1JVC
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Dimeric DNA Quadruplex Containing Major Groove-Aligned A.T.A.T and G.C.G.C Tetrads Stabilized by Inter-Subunit Watson-Crick A:T and G:C Pairs
分子名称: 5'-D(*GP*AP*GP*CP*AP*GP*GP*T)-3'
著者Zhang, N, Gorin, A, Majumdar, A, Kettani, A, Chernichenko, N, Skripkin, E, Patel, D.J.
登録日2001-08-29
公開日2001-10-24
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Dimeric DNA quadruplex containing major groove-aligned A-T-A-T and G-C-G-C tetrads stabilized by inter-subunit Watson-Crick A-T and G-C pairs.
J.Mol.Biol., 312, 2001
2GZI
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BU of 2gzi by Molmil
Crystal Structure of the E9 DNase Domain with a Mutant Immunity Protein IM9 (V34A)
分子名称: Colicin-E9, Colicin-E9 immunity protein, PHOSPHATE ION, ...
著者Santi, P.S, Kolade, O.O, Kuhlmann, U.C, Kleanthous, C, Hemmings, A.M.
登録日2006-05-11
公開日2008-03-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of the Complex of the Colicin E9 DNase Domain with a Mutant Immunity Protein, IM9 (V34A)
To be Published
4HYM
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BU of 4hym by Molmil
Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.
分子名称: 7-({4-[(3R)-3-aminopyrrolidin-1-yl]-5-chloro-6-ethyl-7H-pyrrolo[2,3-d]pyrimidin-2-yl}sulfanyl)pyrido[2,3-b]pyrazin-2(1H)-one, Topoisomerase IV, subunit B
著者Bensen, D.C, Creighton, C.J, Kwan, B, Tari, L.W.
登録日2012-11-13
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.
Bioorg.Med.Chem.Lett., 23, 2013
2GZF
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BU of 2gzf by Molmil
Crystal structure of the E9 DNase domain with a mutant immunity protein IM9 (Y54F)
分子名称: Colicin-E9, Colicin-E9 immunity protein, PHOSPHATE ION, ...
著者Santi, P.S, Kolade, O.O, Kuhlmann, U.C, Kleanthous, C, Hemmings, A.M.
登録日2006-05-11
公開日2007-07-03
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure of the Complex of the Colicin E9 DNase Domain with a Mutant Immunity Protein, IM9 (Y54F)
To be Published
1RO2
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BU of 1ro2 by Molmil
Bifunctional DNA primase/polymerase domain of ORF904 from the archaeal plasmid pRN1- Triple mutant F50M/L107M/L110M manganese soak
分子名称: MANGANESE (II) ION, ZINC ION, hypothetical protein ORF904
著者Lipps, G, Weinzierl, A.O, von Scheven, G, Buchen, C, Cramer, P.
登録日2003-12-01
公開日2004-01-27
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of a bifunctional DNA primase-polymerase
Nat.Struct.Mol.Biol., 11, 2004
5CFN
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BU of 5cfn by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3',3' c-di-AMP, c[A(3',5')pA(3',5')p]
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFP
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Crystal structure of anemone STING (Nematostella vectensis) 'humanized' F276K in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]'
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.066 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFL
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BU of 5cfl by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CITRATE ANION, Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.836 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFR
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BU of 5cfr by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in apo 'unrotated' closed conformation
分子名称: CALCIUM ION, Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFO
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BU of 5cfo by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in apo 'rotated' open conformation
分子名称: Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.102 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
2L4L
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BU of 2l4l by Molmil
Structural insights into the cTAR DNA recognition by the HIV-1 Nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC
分子名称: 5'-D(*CP*TP*GP*G)-3', HIV-1 nucleocapsid protein NCp7, ZINC ION
著者Bazzi, A, Zargarian, L, Chaminade, F, Boudier, C, De Rocquigny, H, Rene, B, Mely, Y, Fosse, P, Mauffret, O.
登録日2010-10-08
公開日2010-12-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC.
Nucleic Acids Res., 39, 2011
5CFQ
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BU of 5cfq by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 2',3' cGAMP, c[G(2',5')pA(3',5')p]
分子名称: SULFATE ION, Stimulator of Interferon Genes, cGAMP
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFM
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BU of 5cfm by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3', 3' cGAMP, c[G(3', 5')pA(3', 5')p]
分子名称: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, CITRATE ANION, Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.994 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
1PG9
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BU of 1pg9 by Molmil
NMR Solution Structure of an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link in a DNA Dodecamer Duplex
分子名称: 5'-D(*CP*CP*TP*CP*AP*GP*GP*CP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*GP*CP*CP*TP*GP*AP*GP*G)-3', CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II)
著者Wu, Y, Pradhan, P, Havener, J, Chaney, S.G, Campbel, S.L.
登録日2003-05-28
公開日2004-07-06
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR solution structure of an oxaliplatin 1,2-d(GG) intrastrand cross-link in a DNA dodecamer duplex
J.Mol.Biol., 341, 2004
3DMN
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BU of 3dmn by Molmil
The crystal structure of the C-terminal domain of a possilbe DNA helicase from Lactobacillus plantarun WCFS1
分子名称: 1,2-ETHANEDIOL, ACETATE ION, FORMIC ACID, ...
著者Tan, K, Zhou, M, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2008-07-01
公開日2008-08-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献The crystal structure of the C-terminal domain of a possilbe DNA helicase from Lactobacillus plantarun WCFS1
To be Published
1FZX
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BU of 1fzx by Molmil
NMR SOLUTION STRUCTURE OF THE DNA DODECAMER GGCAAAAAACGG
分子名称: 5'-D(*CP*CP*GP*TP*TP*TP*TP*TP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*AP*AP*AP*AP*AP*CP*GP*G)-3'
著者MacDonald, D, Herbert, K, Zhang, X, Pologruto, T, Lu, P.
登録日2000-10-04
公開日2001-03-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of an A-tract DNA bend.
J.Mol.Biol., 306, 2001
3TTZ
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Crystal structure of a topoisomerase ATPase inhibitor
分子名称: 2-[(3S,4R)-4-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}-3-fluoropiperidin-1-yl]-1,3-thiazole-5-carboxylic acid, DNA gyrase subunit B, MAGNESIUM ION
著者Boriack-Sjodin, P.A, Read, J, Eakin, A.E, Sherer, B.A.
登録日2011-09-15
公開日2011-11-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Pyrrolamide DNA gyrase inhibitors: Optimization of antibacterial activity and efficacy.
Bioorg.Med.Chem.Lett., 21, 2011
2NMV
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Damage detection by the UvrABC pathway: Crystal structure of UvrB bound to fluorescein-adducted DNA
分子名称: 2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID, 5'-D(P*TP*TP*TP*TP*T)-3', ADENOSINE-5'-DIPHOSPHATE, ...
著者Waters, T.R, Eryilmaz, J, Geddes, S, Barrett, T.E.
登録日2006-10-23
公開日2007-01-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Damage detection by the UvrABC pathway: crystal structure of UvrB bound to fluorescein-adducted DNA
Febs Lett., 580, 2006

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