PDB: 217477 件ウェブページステータス検索Chemie searchBIRD

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4WOC	Proteinase-K Post-Surface Acoustic Waves 分子名称: Proteinase K, SULFATE ION 著者 French, J.B. 登録日 2014-10-15 公開日 2015-02-18 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.601 Å) 主引用文献 Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves. Small, 11, 2015
7CKP	Mycobacterium tuberculosis Enolase 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Enolase, MAGNESIUM ION 著者 Biswal, B.K, Ahmad, M, Jha, B. 登録日 2020-07-18 公開日 2021-07-21 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural snapshots of Mycobacterium tuberculosis enolase reveal dual mode of 2PG binding and its implication in enzyme catalysis. Iucrj, 10, 2023
7CLK	Mycobacterium tuberculosis enolase in complex with alternate 2-phosphoglycerate 分子名称: 1,2-ETHANEDIOL, 2-PHOSPHOGLYCERIC ACID, ACETATE ION, ... 著者 Ahmad, M, Jha, B, Tiwari, S, Pal, R.K, Biswal, B.K. 登録日 2020-07-21 公開日 2022-01-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural snapshots of Mycobacterium tuberculosis enolase reveal dual mode of 2PG binding and its implication in enzyme catalysis. Iucrj, 10, 2023
8XGA	Crystal structure of human Golgi resident glutaminyl cyclase in complex with (Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-((tetrahydro-2H-pyran-4-yl)oxy)indolin-2-one 分子名称: (3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-(oxan-4-yloxy)-1~{H}-indol-2-one, Glutaminyl-peptide cyclotransferase-like protein, ZINC ION 著者 Li, G.-B, Wang, X.-Y. 登録日 2023-12-15 公開日 2024-06-12 最終更新日 2024-06-26 実験手法 X-RAY DIFFRACTION (3.537 Å) 主引用文献 X-ray Structure-Guided Discovery of a Potent Benzimidazole Glutaminyl Cyclase Inhibitor That Shows Activity in a Parkinson's Disease Mouse Model. J.Med.Chem., 67, 2024
8ZC0	SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... 著者 Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. 登録日 2024-04-28 公開日 2024-05-15 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (4.17 Å) 主引用文献 An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
8Y1M	Xylanase R from Bacillus sp. TAR-1 complexed with xylobiose. 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... 著者 Nakamura, T, Kuwata, K, Takita, T, Mizutani, K, Mikami, B, Nakamura, S, Yasukawa, K. 登録日 2024-01-25 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR. Sci Rep, 14, 2024
8XFV	Crystal structure of human Golgi resident glutaminyl cyclase in complex with (Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-(piperidin-4-yloxy)indolin-2-one 分子名称: 3-(1~{H}-benzimidazol-5-ylmethylidene)-4-piperidin-4-yloxy-1~{H}-indol-2-one, Glutaminyl-peptide cyclotransferase-like protein, ZINC ION 著者 Li, G.-B, Wang, X.-Y. 登録日 2023-12-14 公開日 2024-06-12 最終更新日 2024-06-26 実験手法 X-RAY DIFFRACTION (3.13 Å) 主引用文献 X-ray Structure-Guided Discovery of a Potent Benzimidazole Glutaminyl Cyclase Inhibitor That Shows Activity in a Parkinson's Disease Mouse Model. J.Med.Chem., 67, 2024
9BRV	SARS-CoV-2 Papain-like Protease (PLpro) with Fragment 5 分子名称: CHLORIDE ION, N-[2-(dimethylamino)ethyl]-N'-(3-methylphenyl)thiourea, Papain-like protease nsp3, ... 著者 Amporndanai, K, Zhao, B, Fesik, S.W. 登録日 2024-05-11 公開日 2024-07-31 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Fragment-Based Screen of SARS-CoV-2 Papain-like Protease (PLpro) Acs Med.Chem.Lett., 2024
7BET	Structure of Ribonucleotide reductase R2 from Escherichia coli collected by femtosecond serial crystallography on a COC membrane 分子名称: FE (III) ION, Ribonucleoside-diphosphate reductase 1 subunit beta 著者 Aurelius, O, John, J, Martiel, I, Marsh, M, Vera, L, Huang, C.Y, Olieric, V, Leonarski, P, Nass, K, Padeste, C, Karpik, A, Hogbom, M, Wang, M, Pedrini, B. 登録日 2020-12-24 公開日 2022-01-12 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Commissioning results from the SwissMX instrument for fixed target macromolecular crystallography at SwissFEL To Be Published
5KZO	Notch1 transmembrane and associated juxtamembrane segment 分子名称: Neurogenic locus notch homolog protein 1 著者 Deatherage, C.L, Lu, Z, Kroncke, B. 登録日 2016-07-25 公開日 2017-05-10 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural and biochemical differences between the Notch and the amyloid precursor protein transmembrane domains. Sci Adv, 3, 2017
9LYZ	X-RAY CRYSTALLOGRAPHY OF THE BINDING OF THE BACTERIAL CELL WALL TRISACCHARIDE NAM-NAG-NAM TO LYSOZYME 分子名称: HEN EGG WHITE LYSOZYME, N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid 著者 Kelly, J.A, James, M.N.G. 登録日 1979-12-06 公開日 1980-02-27 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 X-ray crystallography of the binding of the bacterial cell wall trisaccharide NAM-NAG-NAM to lysozyme. Nature, 282, 1979
8ZBY	SARS-CoV-2 Omicron BA.1 spike trimer (x2-4P) in complex with 3 D1F6 Fabs (0 RBD up) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... 著者 Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. 登録日 2024-04-28 公開日 2024-05-15 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.67 Å) 主引用文献 An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
8ZC4	SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... 著者 Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. 登録日 2024-04-28 公開日 2024-05-15 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.95 Å) 主引用文献 An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
8XGY	Crystal structure of human Golgi resident glutaminyl cyclase in complex with (R,Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-((1-acetylpyrrolidin-3-yl)oxy)indolin-2-one 分子名称: (3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-[(3~{R})-1-ethanoylpyrrolidin-3-yl]oxy-1~{H}-indol-2-one, Glutaminyl-peptide cyclotransferase, ZINC ION 著者 Li, G.-B, Wang, X.-Y. 登録日 2023-12-16 公開日 2024-06-12 最終更新日 2024-06-26 実験手法 X-RAY DIFFRACTION (2.81 Å) 主引用文献 X-ray Structure-Guided Discovery of a Potent Benzimidazole Glutaminyl Cyclase Inhibitor That Shows Activity in a Parkinson's Disease Mouse Model. J.Med.Chem., 67, 2024
2AI6	Solution structure of human phosphohistidine phosphatase 1 分子名称: 14 kDa phosphohistidine phosphatase 著者 Gong, W, Cui, G, Jin, C, Xia, B. 登録日 2005-07-29 公開日 2006-10-17 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure and catalytic mechanism of human protein histidine phosphatase 1. Biochem.J., 418, 2009
4U8G	Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Streptococcus agalactiae 分子名称: Putative uncharacterized protein gbs1891 著者 Maruyama, Y, Oiki, S, Takase, R, Mikami, B, Murata, K, Hashimoto, W. 登録日 2014-08-03 公開日 2014-12-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Metabolic Fate of Unsaturated Glucuronic/Iduronic Acids from Glycosaminoglycans: MOLECULAR IDENTIFICATION AND STRUCTURE DETERMINATION OF STREPTOCOCCAL ISOMERASE AND DEHYDROGENASE. J.Biol.Chem., 290, 2015
4TX8	Crystal Structure of a Family GH18 Chitinase from Chromobacterium violaceum 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CITRATE ANION, ... 著者 Pereira, H.M, Lobo, M.D.P, Brandao-Neto, J, Grangeiro, T.B. 登録日 2014-07-02 公開日 2015-10-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Crystal Structure of a Family GH18 Chitinase from Chromobacterium violaceum To Be Published
8XGT	Crystal structure of human secretory glutaminyl cyclase in complex with (Z)-3-((1H-benzo[d]imidazol-5-yl)methylene)-4-hydroxyindolin-2-one 分子名称: (3~{Z})-3-(1~{H}-benzimidazol-5-ylmethylidene)-4-oxidanyl-1~{H}-indol-2-one, Glutaminyl-peptide cyclotransferase, ZINC ION 著者 Li, G.-B, Wang, X.-Y. 登録日 2023-12-15 公開日 2024-06-12 最終更新日 2024-06-26 実験手法 X-RAY DIFFRACTION (2.813 Å) 主引用文献 X-ray Structure-Guided Discovery of a Potent Benzimidazole Glutaminyl Cyclase Inhibitor That Shows Activity in a Parkinson's Disease Mouse Model. J.Med.Chem., 67, 2024
4U0Q	Plasmodium falciparum reticulocyte-binding protein homologue 5 (PfRH5) bound to basigin 分子名称: Basigin, Reticulocyte binding protein 5 著者 Wright, K.E, Hjerrild, K.A, Bartlett, J, Douglas, A.D, Jin, J, Brown, R.E, Ashfield, R, Clemmensen, S.B, de Jongh, W.A, Draper, S.J, Higgins, M.K. 登録日 2014-07-14 公開日 2014-08-13 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structure of malaria invasion protein RH5 with erythrocyte basigin and blocking antibodies. Nature, 515, 2014
5KTI	Structure of cow mincle complexed with KMJ1 分子名称: 2,3-dimethoxybenzoic acid, CALCIUM ION, TRIETHYLENE GLYCOL, ... 著者 Feinberg, H, Rambaruth, N.D.S, Jegouzo, S.A.F, Jacobsen, K.M, Djurhuus, R, Poulsen, T.B, Taylor, M.E, Drickamer, K, Weis, W.I. 登録日 2016-07-11 公開日 2016-08-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Binding Sites for Acylated Trehalose Analogs of Glycolipid Ligands on an Extended Carbohydrate Recognition Domain of the Macrophage Receptor Mincle. J.Biol.Chem., 291, 2016
4U65	Structure of the periplasmic output domain of the Legionella pneumophila LapD ortholog CdgS9 in complex with Pseudomonas fluorescens LapG 分子名称: CALCIUM ION, Putative cystine protease, Two component histidine kinase, ... 著者 Chatterjee, D, Cooley, R.B, Boyd, C.D, Mehl, R.A, O'Toole, G.A, Sondermann, H.S. 登録日 2014-07-27 公開日 2014-08-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Mechanistic insight into the conserved allosteric regulation of periplasmic proteolysis by the signaling molecule cyclic-di-GMP. Elife, 3, 2014
4U6T	Crystal structure of the Clostridium histolyticum colH collagenase polycystic kidney disease-like domain 2a at 1.76 Angstrom resolution 分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ColH protein 著者 Bauer, R, Janowska, K, Sakon, J, Matsushita, O, Latimer, E. 登録日 2014-07-29 公開日 2015-03-11 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Structures of three polycystic kidney disease-like domains from Clostridium histolyticum collagenases ColG and ColH. Acta Crystallogr.,Sect.D, 71, 2015
4U8E	Crystal structure of 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase from Streptococcus agalactiae 分子名称: Putative uncharacterized protein gbs1892 著者 Maruyama, y, Oiki, S, Takase, R, Mikami, B, Murata, K, Hashimoto, W. 登録日 2014-08-03 公開日 2015-01-21 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Metabolic Fate of Unsaturated Glucuronic/Iduronic Acids from Glycosaminoglycans: MOLECULAR IDENTIFICATION AND STRUCTURE DETERMINATION OF STREPTOCOCCAL ISOMERASE AND DEHYDROGENASE J.Biol.Chem., 290, 2015
4U90	GephE in complex with PEG crosslinked GABA receptor alpha3 subunit derived dimeric peptide 分子名称: 1,1'-[ethane-1,2-diylbis(oxyethane-2,1-diyl)]bis(1H-pyrrole-2,5-dione), 1,4-BUTANEDIOL, Gamma-aminobutyric acid receptor subunit alpha-3, ... 著者 Kasaragod, V.B, Maric, H.M, Schindelin, H. 登録日 2014-08-05 公開日 2014-12-10 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Design and Synthesis of High-Affinity Dimeric Inhibitors Targeting the Interactions between Gephyrin and Inhibitory Neurotransmitter Receptors. Angew.Chem.Int.Ed.Engl., 54, 2015
4U7K	Crystal structure of the Clostridium histolyticum colH collagenase polycystic kidney disease-like domain 2a in the presence of calcium at 1.9 Angstrom resolution 分子名称: CALCIUM ION, ColH protein 著者 Bauer, R, Janowska, K, Sakon, J, Matsushita, O, Latimer, E. 登録日 2014-07-31 公開日 2015-03-11 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Structures of three polycystic kidney disease-like domains from Clostridium histolyticum collagenases ColG and ColH. Acta Crystallogr.,Sect.D, 71, 2015

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