PDB: 3712 件ウェブページステータス検索Chemie searchBIRD

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8BJQ	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex 分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Knorr, A.G, Mackens-Kiani, T, Musial, J, Berninghausen, O, Becker, T, Beatrix, B, Beckmann, R. 登録日 2022-11-05 公開日 2023-02-08 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 The dynamic architecture of Map1- and NatB-ribosome complexes coordinates the sequential modifications of nascent polypeptide chains. Plos Biol., 21, 2023
7JLW	Sheep Connexin-50 at 2.5 angstroms resolution, Lipid Class 1 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction alpha-8 protein 著者 Flores, J.A, Haddad, B.G, Dolan, K.A, Myers, J.B, Yoshioka, C.C, Copperman, J, Zuckerman, D.M, Reichow, S.L. 登録日 2020-07-30 公開日 2020-09-09 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 angstrom. Nat Commun, 11, 2020
7JQL	Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Mardirossian, M, Sola, R, Beckert, B, Valencic, E, Collis, D.W.P, Borisek, J, Armas, F, Di Stasi, A, Buchmann, J, Syroegin, E.A, Polikanov, Y.S, Magistrato, A, Hilpert, K, Wilson, D.N, Scocchi, M. 登録日 2020-08-11 公開日 2020-08-26 最終更新日 2025-03-19 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Peptide Inhibitors of Bacterial Protein Synthesis with Broad Spectrum and SbmA-Independent Bactericidal Activity against Clinical Pathogens. J.Med.Chem., 63, 2020
7JGN	Crystal Structure of the Zn-bound Human Heavy-chain variant 122H-delta C-star with meta-benzenedihyrdoxamate collected at 100K 分子名称: Ferritin heavy chain, N~1~,N~3~-dihydroxybenzene-1,3-dicarboxamide, SODIUM ION, ... 著者 Bailey, J.B, Tezcan, F.A. 登録日 2020-07-19 公開日 2020-10-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Tunable and Cooperative Thermomechanical Properties of Protein-Metal-Organic Frameworks. J.Am.Chem.Soc., 142, 2020
7JN0	Sheep Connexin-46 at 2.5 angstroms resolution, Lipid Class 2 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction alpha-3 protein 著者 Flores, J.A, Haddad, B.G, Dolan, K.A, Myers, J.A, Yoshioka, C.C, Copperman, J, Zuckerman, D.M, Reichow, S.L. 登録日 2020-08-03 公開日 2020-09-09 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 angstrom. Nat Commun, 11, 2020
5T62	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex 分子名称: 5.8S Ribosomal RNA, 5S Ribosomal RNA, 60S ribosomal export protein NMD3, ... 著者 Malyutin, A.G, Musalgaonkar, S, Patchett, S, Frank, J, Johnson, A.W. 登録日 2016-09-01 公開日 2017-02-08 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. EMBO J., 36, 2017
5TGA	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), ... 著者 Melnikov, S, Mailliot, J. 登録日 2016-09-27 公開日 2016-11-23 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Molecular insights into protein synthesis with proline residues. EMBO Rep., 17, 2016
5TGM	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), ... 著者 Melnikov, S, Mailliot, J, Yusupov, M. 登録日 2016-09-28 公開日 2017-01-18 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Molecular insights into protein synthesis with proline residues. EMBO Rep., 17, 2016
5TBW	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Konst, Z.A, Szklarski, A.R, Pellegrino, S, Michalak, S.E, Meyer, M, Zanette, C, Cencic, R, Nam, S, Horne, D.A, Pelletier, J, Mobley, D.L, Yusupova, G, Yusupov, M, Vanderwal, C.D. 登録日 2016-09-13 公開日 2017-07-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Synthesis facilitates an understanding of the structural basis for translation inhibition by the lissoclimides. Nat Chem, 9, 2017
5THP	Rhodocetin in complex with the integrin alpha2-A domain 分子名称: CHLORIDE ION, GLYCEROL, Integrin alpha-2, ... 著者 McDougall, M, Orriss, G.L, Stetefeld, J. 登録日 2016-09-30 公開日 2017-08-02 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (3.006 Å) 主引用文献 Dramatic and concerted conformational changes enable rhodocetin to block alpha 2 beta 1 integrin selectively. PLoS Biol., 15, 2017
5TCU	Methicillin sensitive Staphylococcus aureus 70S ribosome 分子名称: 16S RRNA, 23S RRNA, 30S ribosomal protein S10, ... 著者 Eyal, Z, Ahmed, T, Belousoff, N, Mishra, S, Matzov, D, Bashan, A, Zimmerman, E, Lithgow, T, Bhushan, S, Yonath, A. 登録日 2016-09-15 公開日 2017-05-24 最終更新日 2025-05-21 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural Basis for Linezolid Binding Site Rearrangement in the Staphylococcus aureus Ribosome. MBio, 8, 2017
5T61	TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, TRICLINIC FORM AT 2.55 A 分子名称: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CHLORIDE ION, HYDROSULFURIC ACID, ... 著者 Wagner, T, Ermler, U, Shima, S. 登録日 2016-09-01 公開日 2016-10-19 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters. Science, 354, 2016
5T5H	Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit 分子名称: 40S ribosomal protein L14, 5.8S rRNA, 5S rRNA, ... 著者 Liu, Z, Gutierrez-Vargas, C, Wei, J, Grassucci, R.A, Ramesh, M, Espina, N, Sun, M, Tutuncuoglu, B, Madison-Antenucci, S, Woolford Jr, J.L, Tong, L, Frank, J. 登録日 2016-08-31 公開日 2016-10-12 最終更新日 2024-12-25 実験手法 ELECTRON MICROSCOPY (2.54 Å) 主引用文献 Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit. Proc.Natl.Acad.Sci.USA, 113, 2016
7JJP	Sheep Connexin-50 at 1.9 angstroms resolution by CryoEM 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction alpha-8 protein 著者 Flores, J.A, Haddad, B.G, Dolan, K.D, Myers, J.B, Yoshioka, C.C, Copperman, J, Zuckerman, D.M, Reichow, S.L. 登録日 2020-07-27 公開日 2020-09-09 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (1.94 Å) 主引用文献 Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 angstrom. Nat Commun, 11, 2020
7K00	Structure of the Bacterial Ribosome at 2 Angstrom Resolution 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Watson, Z.L, Ward, F.R, Meheust, R, Ad, O, Schepartz, A, Banfield, J.F, Cate, J.H.D. 登録日 2020-09-02 公開日 2020-09-23 最終更新日 2025-03-19 実験手法 ELECTRON MICROSCOPY (1.98 Å) 主引用文献 Structure of the bacterial ribosome at 2 angstrom resolution. Elife, 9, 2020
7JGL	Crystal Structure of the Zn-bound Human Heavy-chain variant 122H-delta C-star with 2,5-furandihyrdoxamate collected at 100K 分子名称: Ferritin heavy chain, N~2~,N~5~-dihydroxyfuran-2,5-dicarboxamide, SODIUM ION, ... 著者 Bailey, J.B, Tezcan, F.A. 登録日 2020-07-19 公開日 2020-10-21 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 Tunable and Cooperative Thermomechanical Properties of Protein-Metal-Organic Frameworks. J.Am.Chem.Soc., 142, 2020
7JQM	Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Mardirossian, M, Sola, R, Beckert, B, Valencic, E, Collis, D.W.P, Borisek, J, Armas, F, Di Stasi, A, Buchmann, J, Syroegin, E.A, Polikanov, Y.S, Magistrato, A, Hilpert, K, Wilson, D.N, Scocchi, M. 登録日 2020-08-11 公開日 2020-08-26 最終更新日 2025-03-19 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Peptide Inhibitors of Bacterial Protein Synthesis with Broad Spectrum and SbmA-Independent Bactericidal Activity against Clinical Pathogens. J.Med.Chem., 63, 2020
5T5I	TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, ORTHORHOMBIC FORM AT 1.9 A 分子名称: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CALCIUM ION, GLYCEROL, ... 著者 Wagner, T, Ermler, U, Shima, S. 登録日 2016-08-31 公開日 2016-10-19 最終更新日 2025-04-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters. Science, 354, 2016
7JWF	Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ... 著者 Hettle, A.G, Boraston, A.B. 登録日 2020-08-25 公開日 2020-11-04 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.187 Å) 主引用文献 The structure of a family 110 glycoside hydrolase provides insight into the hydrolysis of alpha-1,3-galactosidic linkages in lambda-carrageenan and blood group antigens. J.Biol.Chem., 295, 2020
5T6R	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex 分子名称: 25S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Malyutin, A.G, Musalgaonkar, S, Patchett, S, Frank, J, Johnson, A.W. 登録日 2016-09-01 公開日 2017-02-08 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. EMBO J., 36, 2017
7JMD	Sheep Connexin-46 at 2.5 angstroms resolution, Lipid Class 1 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction alpha-3 protein 著者 Flores, J.A, Haddad, B.G, Dolan, K.A, Myers, J.B, Yoshioka, C.C, Copperman, J, Zuckerman, D.M, Reichow, S.L. 登録日 2020-07-31 公開日 2020-09-09 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 angstrom. Nat Commun, 11, 2020
7JU4	Radial spoke 2 stalk, IDAc, and N-DRC attached with doublet microtubule 分子名称: 28 kDa inner dynein arm light chain, axonemal, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Gui, M, Ma, M, Sze-Tu, E, Wang, X, Koh, F, Zhong, E, Berger, B, Davis, J, Dutcher, S, Zhang, R, Brown, A. 登録日 2020-08-19 公開日 2020-12-16 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structures of radial spokes and associated complexes important for ciliary motility. Nat.Struct.Mol.Biol., 28, 2021
7JKC	Sheep Connexin-46 at 1.9 angstroms resolution by CryoEM 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction alpha-3 protein 著者 Flores, J.A, Haddad, B.G, Dolan, K.D, Myers, J.B, Yoshioka, C.C, Copperman, J, Zuckerman, D.M, Reichow, S.L. 登録日 2020-07-28 公開日 2020-09-09 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (1.9 Å) 主引用文献 Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 angstrom. Nat Commun, 11, 2020
7JM9	Sheep Connexin-50 at 2.5 angstroms reoslution, Lipid Class 2 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction alpha-8 protein 著者 Flores, J.A, Haddad, B.G, Dolan, K.A, Myers, J.A, Yoshioka, C.C, Copperman, J, Zuckerman, D.M, Reichow, S.L. 登録日 2020-07-31 公開日 2020-09-09 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 angstrom. Nat Commun, 11, 2020
7JQ7	The Phi-28 gp11 DNA packaging Motor 分子名称: Encapsidation protein, IODIDE ION, SULFATE ION 著者 Morais, M.C, White, M.A, Dill, E. 登録日 2020-08-10 公開日 2021-06-16 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.895 Å) 主引用文献 Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor. Nucleic Acids Res., 49, 2021

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