PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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3IVP	The structure of a possible transposon-related DNA-binding protein from Clostridium difficile 630. 分子名称: Putative transposon-related DNA-binding protein, TETRAETHYLENE GLYCOL 著者 Tan, K, Marshall, N, Jedrzejczak, R, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2009-09-01 公開日 2009-09-22 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 The structure of a possible transposon-related DNA-binding protein from Clostridium difficile 630. To be Published
443D	5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'/ BENZIMIDAZOLE DERIVATIVE COMPLEX 分子名称: 2'-(3-IODOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Squire, C.J, Baker, L.J, Clark, G.R, Martin, R.F, White, J. 登録日 1999-01-14 公開日 2000-02-02 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structures of m-iodo Hoechst-DNA complexes in crystals with reduced solvent content: implications for minor groove binder drug design. Nucleic Acids Res., 28, 2000
2AC0	Structural Basis of DNA Recognition by p53 Tetramers (complex I) 分子名称: 5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3', Cellular tumor antigen p53, ZINC ION 著者 Kitayner, M, Rozenberg, H, Kessler, N, Rabinovich, D, Shakked, Z. 登録日 2005-07-18 公開日 2006-07-11 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Basis of DNA Recognition by p53 Tetramers Mol.Cell, 22, 2006
1QUM	CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNA 分子名称: 5'-D(*(3DR)P*CP*GP*AP*CP*GP*A)-3', 5'-D(*CP*GP*TP*CP*C)-3', 5'-D(*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*G)-3', ... 著者 Hosfield, D.J, Guan, Y, Haas, B.J, Cunningham, R.P, Tainer, J.A. 登録日 1999-07-01 公開日 1999-08-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis. Cell(Cambridge,Mass.), 98, 1999
2XQC	DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE COMPLEXED WITH LEFT END RECOGNITION AND CLEAVAGE SITE AND ZN 分子名称: 5'-D(TP*TP*GP*AP*TP*GP)-3', DRA2 TRANSPOSASE LEFT END RECOGNITION SEQUENCE, TRANSPOSASE, ... 著者 Hickman, A.B, James, J.A, Barabas, O, Pasternak, C, Ton-Hoang, B, Chandler, M, Sommer, S, Dyda, F. 登録日 2010-09-01 公開日 2010-10-13 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 DNA Recognition and the Precleavage State During Single-Stranded DNA Transposition in D. Radiodurans. Embo J., 29, 2010
1DL8	CRYSTAL STRUCTURE OF 5-F-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2 分子名称: 5-FLUORO-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE, DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') 著者 Adams, A, Guss, J.M, Collyer, C.A, Denny, W.A, Wakelin, L.P. 登録日 1999-12-08 公開日 2000-10-30 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Acridinecarboxamide topoisomerase poisons: structural and kinetic studies of the DNA complexes of 5-substituted 9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamides. Mol.Pharmacol., 58, 2000
2ATA	Structural Basis of DNA Recognition by p53 Tetramers (complex II) 分子名称: 5'-D(*AP*AP*GP*GP*CP*AP*TP*GP*CP*CP*TP*T)-3', Cellular tumor antigen p53, ZINC ION 著者 Kitayner, M, Rozenberg, H, Kessler, N, Rabinovich, D, Shakked, Z. 登録日 2005-08-24 公開日 2006-07-11 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Basis of DNA Recognition by p53 Tetramers Mol.Cell, 22, 2006
1VJF	CRYSTAL STRUCTURE OF A PUTATIVE DNA-BINDING PROTEIN (CC_0111) FROM CAULOBACTER CRESCENTUS CB15 AT 1.62 A RESOLUTION 分子名称: CHLORIDE ION, DNA-binding protein, putative, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2004-02-11 公開日 2004-03-09 最終更新日 2023-01-25 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Crystal structure of putative DNA-binding protein from Caulobacter crescentus at 1.62 A resolution To be published
2MG8	Solution structure of TFF1 Estrogen Response Element complexed with DNA Bis-intercalating Anticancer Drug XR5944 (MLN944) 分子名称: 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM, 5'-D(*AP*GP*GP*TP*CP*AP*CP*GP*GP*TP*GP*GP*CP*CP*A)-3', 5'-D(*TP*GP*GP*CP*CP*AP*CP*CP*GP*TP*GP*AP*CP*CP*T)-3' 著者 Lin, C. 登録日 2013-10-30 公開日 2014-04-23 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of a 2:1 complex of anticancer drug XR5944 with TFF1 estrogen response element: insights into DNA recognition by a bis-intercalator. Nucleic Acids Res., 42, 2014
3QK2	Structure-Based Analysis of the Interaction between the Simian Virus 40 T-Antigen Origin Binding Domain and Single-Stranded DNA 分子名称: Large T antigen, THIOCYANATE ION 著者 Meinke, G, Bullock, P.A, Bohm, A. 登録日 2011-01-31 公開日 2011-02-23 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.643 Å) 主引用文献 Structure-based analysis of the interaction between the simian virus 40 T-antigen origin binding domain and single-stranded DNA. J.Virol., 85, 2011
3EBC	Structure of N141A HincII with Cognate DNA 分子名称: 5'-D(*DGP*DCP*DCP*DCP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3', 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DGP*DGP*DGP*DC)-3', MANGANESE (II) ION, ... 著者 Little, E.J, Babic, A.C, Horton, N.C. 登録日 2008-08-27 公開日 2008-12-23 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Early Interrogation and Recognition of DNA Sequence by Indirect Readout Structure, 16, 2008
3HGD	Crystal Structure of 2-Se-Thymidine Derivatized DNA 分子名称: 5'-D(*GP*(UMS)P*GP*(US3)P*AP*CP*AP*C)-3' 著者 Sheng, J, Hassan, A.E, Zhang, W, Huang, Z. 登録日 2009-05-13 公開日 2009-08-18 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 High fidelity of base pairing by 2-selenothymidine in DNA. J.Am.Chem.Soc., 132, 2010
4B3O	Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface 分子名称: (-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-4-TRIFLUOROMETHYL-1,4-DIHYDRO-2H-3,1-BENZOXAZIN-2-ONE, 5'-D(*CP*GP*TP*AP*TP*GP*CP*CP*TP*AP*TP*AP*GP*TP *TP*AP*TP*TP*GP*TP*GP*GP*CP*C)-3', 5'-R(*AP*UP*GP*AP*3DRP*GP*GP*CP*CP*AP*CP*AP*AP*UP*AP *AP*CP*UP*AP*UP*AP*GP*GP*CP*AP*UP*A)-3', ... 著者 Lapkouski, M, Tian, L, Miller, J.T, Le Grice, S.F.J, Yang, W. 登録日 2012-07-25 公開日 2013-01-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Complexes of HIV-1 RT, Nnrti and RNA/DNA Hybrid Reveal a Structure Compatible with RNA Degradation Nat.Struct.Mol.Biol., 20, 2013
4LH6	Crystal structure of a LigA inhibitor 分子名称: 4-amino-2-bromothieno[3,2-c]pyridine-7-carboxamide, ACETATE ION, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, ... 著者 Benenato, K, Wang, H, Mcguire, H.M, Davis, H, Gao, N, Prince, D.B, Jahic, H, Stokes, S.S, Boriack-Sjodin, P.A. 登録日 2013-06-30 公開日 2013-12-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Identification through structure-based methods of a bacterial NAD(+)-dependent DNA ligase inhibitor that avoids known resistance mutations. Bioorg.Med.Chem.Lett., 24, 2014
2VBL	Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers 分子名称: 5'-D(*DA*DA*DA*DA*DG*DG*DC*DA*DG*DAP)-3', 5'-D(*DA*DG*DG*DA*DT*DC*DC*DT*DA*DAP)-3', 5'-D(*DT*DC*DT*DG*DC*DC*DT*DT*DT*DT*DT*DT *DGP*DAP)-3', ... 著者 Redondo, P, Prieto, J, Munoz, I.G, Alibes, A, Stricher, F, Serrano, L, Arnould, S, Perez, C, Cabaniols, J.P, Duchateau, P, Paques, F, Blanco, F.J, Montoya, G. 登録日 2007-09-14 公開日 2008-10-28 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases Nature, 456, 2008
1KC6	HincII Bound to Cognate DNA 分子名称: 5'-D(P*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3', SODIUM ION, TYPE II RESTRICTION ENZYME HINCII 著者 Horton, N.C, Dorner, L.F, Perona, J.J. 登録日 2001-11-07 公開日 2001-12-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation. Nat.Struct.Biol., 9, 2002
2VBN	Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers 分子名称: 5'-D(*AP*AP*AP*AP*GP*GP*CP*AP*GP*AP)-3', 5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*AP*AP)-3', 5'-D(*TP*CP*TP*GP*CP*CP*TP*TP*TP*TP *TP*TP*GP*AP)-3', ... 著者 Redondo, P, Prieto, J, Munoz, I.G, Alibes, A, Stricher, F, Serrano, L, Arnould, S, Perez, C, Cabaniols, J.P, Duchateau, P, Paques, F, Blanco, F.J, Montoya, G. 登録日 2007-09-14 公開日 2008-10-28 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases Nature, 456, 2008
4DOG	Structures of Vaccinia Virus Uracil-DNA Glycosylase in New Crystal Forms 分子名称: 1,2-ETHANEDIOL, SULFATE ION, Uracil-DNA glycosylase 著者 Schormann, N, Chattopadhyay, D. 登録日 2012-02-09 公開日 2013-02-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Analysis of the Dimer Interface in Crystal Structures of Vaccinia Virus Uracil DNA Glycosylase To be Published
3BAA	Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase 分子名称: 7-amino-2-tert-butyl-4-{[2-(1H-imidazol-4-yl)ethyl]amino}pyrido[2,3-d]pyrimidine-6-carboxamide, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, ... 著者 Pinko, C. 登録日 2007-11-07 公開日 2008-11-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase To be Published
1KF1	Structure and Packing of Human Telomeric DNA 分子名称: 5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3, POTASSIUM ION 著者 Parkinson, G.N, Lee, M.P.H, Neidle, S. 登録日 2001-11-19 公開日 2002-05-31 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417, 2002
4LH7	Crystal structure of a LigA inhibitor 分子名称: 4-aminothieno[3,2-c]pyridine-2,7-dicarboxamide, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, ... 著者 Boriack-Sjodin, P.A, Prince, D.B. 登録日 2013-06-30 公開日 2013-12-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Identification through structure-based methods of a bacterial NAD(+)-dependent DNA ligase inhibitor that avoids known resistance mutations. Bioorg.Med.Chem.Lett., 24, 2014
1ZGW	NMR structure of E. Coli Ada protein in complex with DNA 分子名称: 5'-D(*GP*CP*AP*AP*AP*TP*TP*AP*AP*AP*GP*CP*GP*CP*AP*AP*GP*A)-3', 5'-D(*TP*CP*TP*TP*GP*CP*GP*CP*TP*TP*TP*AP*AP*TP*TP*TP*GP*C)-3', Ada polyprotein, ... 著者 He, C, Hus, J.C, Sun, L.J, Zhou, P, Norman, D.P, Doetsch, V, Wei, H, Gross, J.D, Lane, W.S, Wagner, G, Verdine, G.L. 登録日 2005-04-22 公開日 2005-10-18 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 A Methylation-Dependent Electrostatic Switch Controls DNA Repair and Transcriptional Activation by E. coli Ada. Mol.Cell, 20, 2005
3BA8	Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase 分子名称: 2-amino-7-fluoro-5-oxo-5H-chromeno[2,3-b]pyridine-3-carboxamide, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, ... 著者 Pinko, C. 登録日 2007-11-07 公開日 2008-11-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase To be Published
3BAB	Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase 分子名称: 7-amino-2-tert-butyl-4-(4-pyrimidin-2-ylpiperazin-1-yl)pyrido[2,3-d]pyrimidine-6-carboxamide, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, ... 著者 Pinko, C. 登録日 2007-11-07 公開日 2008-11-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase To be Published
3SC3	Crystal structure of a Putative DNA replication regulator Hda (Sama_1916) from SHEWANELLA AMAZONENSIS SB2B at 3.00 A resolution 分子名称: Putative DNA replication regulator Hda, SULFATE ION 著者 Joint Center for Structural Genomics (JCSG) 登録日 2011-06-06 公開日 2011-07-13 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (3.001 Å) 主引用文献 Crystal structure of a Putative DNA replication regulator Hda (Sama_1916) from SHEWANELLA AMAZONENSIS SB2B at 3.00 A resolution To be published

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