PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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1II1	Structural Basis for Poor Uracil Excision from Hairpin DNA: NMR Study 分子名称: 5'-D(*AP*GP*GP*AP*TP*CP*CP*UP*TP*TP*TP*GP*GP*AP*TP*CP*CP*T)-3' 著者 Ghosh, M, Rumpal, N, Varshney, U, Chary, K.V. 登録日 2001-04-20 公開日 2002-05-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural basis for poor uracil excision from hairpin DNA. An NMR study. Eur.J.Biochem., 269, 2002
4PM3	Structure of the double-stranded DNA binding type IV secretion protein TraN from Enterococcus 分子名称: AM32, BROMIDE ION, PLATINUM (II) ION 著者 Goessweiner-Mohr, N, Keller, W. 登録日 2014-05-20 公開日 2014-07-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of the double-stranded DNA binding type IV secretion protein TraN from Enterococcus ACTA CRYSTALLOGR.,SECT.D, 70, 2014
1NFJ	Structure of a Sir2 substrate, alba, reveals a mechanism for deactylation-induced enhancement of DNA-binding 分子名称: conserved hypothetical protein AF1956 著者 Zhao, K, Chai, X, Marmorstein, R. 登録日 2002-12-15 公開日 2003-08-05 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of a Sir2 substrate, alba, reveals a mechanism for deacetylation-induced enhancement of DNA-binding J.Biol.Chem., 278, 2003
2DPM	DPNM DNA ADENINE METHYLTRANSFERASE FROM STREPTOCCOCUS PNEUMONIAE COMPLEXED WITH S-ADENOSYLMETHIONINE 分子名称: MERCURY (II) ION, PROTEIN (ADENINE-SPECIFIC METHYLTRANSFERASE DPNII 1), S-ADENOSYLMETHIONINE 著者 Tran, P.H, Korszun, Z.R, Cerritelli, S, Springhorn, S.S, Lacks, S.A. 登録日 1998-09-03 公開日 1998-12-23 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of the DpnM DNA adenine methyltransferase from the DpnII restriction system of streptococcus pneumoniae bound to S-adenosylmethionine. Structure, 6, 1998
7ZNF	ALTERNATING ZINC FINGERS IN THE HUMAN MALE ASSOCIATED PROTEIN ZFY: 2D NMR STRUCTURE OF AN EVEN FINGER AND IMPLICATIONS FOR "JUMPING-LINKER" DNA RECOGNITION 分子名称: ZINC FINGER, ZINC ION 著者 Kochoyan, M, Keutmann, H.T, Weiss, M.A. 登録日 1991-08-22 公開日 1994-01-31 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Alternating zinc fingers in the human male associated protein ZFY: 2D NMR structure of an even finger and implications for "jumping-linker" DNA recognition. Biochemistry, 30, 1991
1XXI	ADP Bound E. coli Clamp Loader Complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit gamma, DNA polymerase III, ... 著者 Kazmirski, S.L, Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J. 登録日 2004-11-05 公開日 2004-12-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (4.1 Å) 主引用文献 Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex Proc.Natl.Acad.Sci.USA, 101, 2004
4P1D	Structure of the complex of a bimolecular human telomeric DNA with Coptisine 分子名称: 6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium, POTASSIUM ION, telomeric DNA 著者 Ferraroni, M, Bazzicalupi, C, Gratteri, P. 登録日 2014-02-26 公開日 2015-03-18 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal Structure of the complex of a bimolecular human telomeric DNA with Coptisine to be published
6WFG	Crystal structure of human Naa50 in complex with an inhibitor (compound 3) identified using DNA encoded library technology 分子名称: (2S)-N-[(2S)-3-[1-(3-tert-butyl-1-methyl-1H-pyrazole-5-carbonyl)piperidin-4-yl]-1-(methylamino)-1-oxopropan-2-yl]-6-oxopiperidine-2-carboxamide, COENZYME A, N-alpha-acetyltransferase 50 著者 Greasley, S.E, Feng, J, Deng, Y.-L, Stewart, A.E. 登録日 2020-04-03 公開日 2020-07-01 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 Characterization of SpecificN-alpha-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library. Acs Med.Chem.Lett., 11, 2020
6WFO	Crystal structure of human Naa50 in complex with AcCoA and an inhibitor (compound 4b) identified using DNA encoded library technology 分子名称: (4S)-1-methyl-N-{(3S,5R)-5-[4-(methylcarbamoyl)-1,3-thiazol-2-yl]-1-[4-(1H-tetrazol-5-yl)benzene-1-carbonyl]pyrrolidin-3-yl}-2,6-dioxohexahydropyrimidine-4-carboxamide, ACETYL COENZYME *A, N-alpha-acetyltransferase 50 著者 Greasley, S.E, Feng, J, Deng, Y.-L, Stewart, A.E. 登録日 2020-04-03 公開日 2020-07-01 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Characterization of SpecificN-alpha-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library. Acs Med.Chem.Lett., 11, 2020
5A0M	THE CRYSTAL STRUCTURE OF I-SCEI IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF MN 分子名称: 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP)-3', 5'-D(*CP*AP*GP*GP*GP*TP*AP*AP*TP*AP*CP)-3', 5'-D(*CP*CP*CP*TP*AP*GP*CP*GP*TP)-3', ... 著者 Prieto, J, Redondo, P, Merino, N, Villate, M, Blanco, F.J, Molina, R. 登録日 2015-04-21 公開日 2016-05-04 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of the I-Scei Nuclease Complexed with its DsDNA Target and Three Catalytic Metal Ions. Acta Crystallogr.,Sect.F, 72, 2016
1UL5	Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 7 分子名称: ZINC ION, squamosa promoter binding protein-like 7 著者 Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2003-09-09 公開日 2004-03-09 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors. J.Mol.Biol., 337, 2004
1VA2	Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 2) 分子名称: Transcription factor Sp1, ZINC ION 著者 Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. 登録日 2004-02-07 公開日 2005-02-08 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 NMR structure of transcription factor Sp1 DNA binding domain Biochemistry, 43, 2004
6WFN	Crystal structure of human Naa50 in complex with AcCoA and an inhibitor (compound 4a) identified using DNA encoded library technology 分子名称: (4S)-1-methyl-N-{(3S,5S)-5-[4-(methylcarbamoyl)-1,3-thiazol-2-yl]-1-[4-(1H-tetrazol-5-yl)benzene-1-carbonyl]pyrrolidin-3-yl}-2,6-dioxohexahydropyrimidine-4-carboxamide, ACETYL COENZYME *A, N-alpha-acetyltransferase 50 著者 Greasley, S.E, Feng, J, Deng, Y.-L, Stewart, A.E. 登録日 2020-04-03 公開日 2020-07-01 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Characterization of SpecificN-alpha-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library. Acs Med.Chem.Lett., 11, 2020
5NZW	Crystal structure of DNA cross-link repair protein 1A in complex with ceftriaxone 分子名称: Ceftriaxone, DNA cross-link repair 1A protein, NICKEL (II) ION 著者 Newman, J.A, Aitkenhead, H, Kupinska, K, Burgess-Brown, N.A, Talon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2017-06-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of DNA cross-link repair protein 1A in complex with ceftriaxone To Be Published
5NZY	Crystal structure of DNA cross-link repair protein 1A in complex with Cefotaxime 分子名称: (6R,7R)-3-(acetyloxymethyl)-7-[[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-8-oxo-5-thia-1-azabicy clo[4.2.0]oct-2-ene-2-carboxylic acid, DNA cross-link repair 1A protein, NICKEL (II) ION 著者 Newman, J.A, Aitkenhead, H, Kupinska, K, Burgess-Brown, N.A, Talon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2017-06-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.551 Å) 主引用文献 Crystal structure of DNA cross-link repair protein 1A in complex with Cefotaxime To Be Published
5DUK	N-terminal structure of putative DNA binding transcription factor from Thermoplasmatales archaeon SCGC AB-539-N05 分子名称: putative DNA binding protein 著者 Chang, C, Li, H, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2015-09-18 公開日 2015-10-07 実験手法 X-RAY DIFFRACTION (2.352 Å) 主引用文献 N-terminal structure of putative DNA binding transcription factor from Thermoplasmatales archaeon SCGC AB-539-N05 To Be Published
4GQJ	Complex of a binuclear Ruthenium compound D,D-([mu-(11,11')-bi(dppz)-(1,10-phenanthroline)4-Ru2]4+) bound to d(CGTACG) 分子名称: (mu-11,11'-bidipyrido[3,2-a:2',3'-c]phenazine-1kappa~2~N~4~,N~5~:2kappa~2~N~4'~,N~5'~)[tetrakis(1,10-phenanthroline-kappa~2~N~1~,N~10~)]diruthenium, DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') 著者 Boer, D.R, Coll, M. 登録日 2012-08-23 公開日 2014-03-05 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.951 Å) 主引用文献 Thread Insertion of a Bis(dipyridophenazine) Diruthenium Complex into the DNA Double Helix by the Extrusion of AT Base Pairs and Cross-Linking of DNA Duplexes. Angew.Chem.Int.Ed.Engl., 53, 2014
6WFK	Crystal structure of human Naa50 in complex with CoA and an inhibitor (compound 4a) identified using DNA encoded library technology 分子名称: (4S)-1-methyl-N-{(3S,5S)-5-[4-(methylcarbamoyl)-1,3-thiazol-2-yl]-1-[4-(1H-tetrazol-5-yl)benzene-1-carbonyl]pyrrolidin-3-yl}-2,6-dioxohexahydropyrimidine-4-carboxamide, COENZYME A, N-alpha-acetyltransferase 50 著者 Greasley, S.E, Feng, J, Deng, Y.-L, Stewart, A.E. 登録日 2020-04-03 公開日 2020-07-01 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Characterization of SpecificN-alpha-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library. Acs Med.Chem.Lett., 11, 2020
6E49	Pif1 peptide bound to PCNA trimer 分子名称: ATP-dependent DNA helicase PIF1, Proliferating cell nuclear antigen 著者 Buzovetsky, O, Kwon, Y, Pham, N.T, Kim, C, Ira, G, Sung, P, Xiong, Y. 登録日 2018-07-17 公開日 2018-08-22 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Role of the Pif1-PCNA Complex in Pol delta-Dependent Strand Displacement DNA Synthesis and Break-Induced Replication. Cell Rep, 21, 2017
2WTU	Crystal structure of Escherichia coli MutS in complex with a 16 basepair oligo containing an A.A mismatch. 分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, DNA, ... 著者 Natrajan, G, Lebbink, J.H, Reumer, A, Fish, A, Winterwerp, H.H, Sixma, T.K. 登録日 2009-09-22 公開日 2010-02-09 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Magnesium coordination controls the molecular switch function of DNA mismatch repair protein MutS. J. Biol. Chem., 285, 2010
4ACO	Structure of the budding yeast Ndc10 N-terminal domain 分子名称: CENTROMERE DNA-BINDING PROTEIN COMPLEX CBF3 SUBUNIT A 著者 Perriches, T, Singleton, M.R. 登録日 2011-12-16 公開日 2012-01-11 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 The Structure of the Yeast Kinetochore Ndc10 DNA-Binding Domain Reveals an Unexpected Evolutionary Relationship to Tyrosine Recombinases. J.Biol.Chem., 287, 2012
1UL4	Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 4 分子名称: ZINC ION, squamosa promoter binding protein-like 4 著者 Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2003-09-09 公開日 2004-03-09 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors. J.Mol.Biol., 337, 2004
1MA7	Crystal structure of Cre site-specific recombinase complexed with a mutant DNA substrate, LoxP-A8/T27 分子名称: CRE RECOMBINASE, LOXP 著者 Martin, S.S, Chu, V.C, Baldwin, E.P. 登録日 2002-08-01 公開日 2003-07-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Modulation of the active complex assembly and turnover rate by protein-DNA interactions in Cre-LoxP recombination Biochemistry, 42, 2003
1VA3	Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 3) 分子名称: Transcription factor Sp1, ZINC ION 著者 Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. 登録日 2004-02-07 公開日 2005-02-08 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 NMR structure of transcription factor Sp1 DNA binding domain Biochemistry, 43, 2004
1IH1	Crystal Structure of the B-DNA Hexamer GGCGCC with Cobalt Hexamine Resolved to 2.0 Angstroms 分子名称: 5'-D(*GP*GP*CP*GP*CP*C)-3', COBALT HEXAMMINE(III), MAGNESIUM ION 著者 Vargason, J.M, Henderson, K, Ho, P.S. 登録日 2001-04-18 公開日 2001-06-18 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 A crystallographic map of the transition from B-DNA to A-DNA. Proc.Natl.Acad.Sci.USA, 98, 2001

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