Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7SPM
DownloadVisualize
BU of 7spm by Molmil
Replication Initiator Protein REPE54 and cognate DNA sequence with terminal three prime phosphates chemically crosslinked (30 mg/mL EDC, 12 hours, 2 doses).
分子名称: DNA (5'-D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*A)-3'), DNA (5'-D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*A)-3'), MAGNESIUM ION, ...
著者Ward, A.R, Snow, C.D.
登録日2021-11-02
公開日2021-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.28 Å)
主引用文献Stabilizing DNA-Protein Co-Crystals via Intra-Crystal Chemical Ligation of the DNA
Crystals, 12, 2022
4XNJ
DownloadVisualize
BU of 4xnj by Molmil
X-ray structure of PepTst2
分子名称: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, Di-or tripeptide:H+ symporter, PHOSPHATE ION
著者Huang, C.Y, Olieric, V, Diederichs, K, Wang, M, Caffrey, M.
登録日2015-01-15
公開日2015-06-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献In meso in situ serial X-ray crystallography of soluble and membrane proteins.
Acta Crystallogr.,Sect.D, 71, 2015
7CA1
DownloadVisualize
BU of 7ca1 by Molmil
Crystal structure of dihydroorotase in complex with plumbagin from Saccharomyces cerevisiae
分子名称: (2S)-2-hydroxybutanedioic acid, 5-hydroxy-2-methylnaphthalene-1,4-dione, Dihydroorotase, ...
著者Guan, H.H, Huang, Y.H, Huang, C.Y, Chen, C.J.
登録日2020-06-08
公開日2021-06-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Plumbagin, a Natural Product with Potent Anticancer Activities, Binds to and Inhibits Dihydroorotase, a Key Enzyme in Pyrimidine Biosynthesis.
Int J Mol Sci, 22, 2021
7CA0
DownloadVisualize
BU of 7ca0 by Molmil
Crystal structure of dihydroorotase in complex with 5-fluoroorotic acid from Saccharomyces cerevisiae
分子名称: 5-FLUORO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID, Dihydroorotase, ZINC ION
著者Guan, H.H, Huang, Y.H, Huang, C.Y, Chen, C.J.
登録日2020-06-08
公開日2021-06-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Complexed Crystal Structure of Saccharomyces cerevisiae Dihydroorotase with Inhibitor 5-Fluoroorotate Reveals a New Binding Mode.
Bioinorg Chem Appl, 2021, 2021
6UCK
DownloadVisualize
BU of 6uck by Molmil
proIAPP in DPC Micelles - Two-Conformer Ensemble Refinement, Bent Conformer
分子名称: Islet amyloid polypeptide
著者DeLisle, C.F, Malooley, A.L, Banerjee, I, Lorieau, J.L.
登録日2019-09-16
公開日2020-02-26
最終更新日2024-11-20
実験手法SOLUTION NMR
主引用文献Pro-islet amyloid polypeptide in micelles contains a helical prohormone segment.
Febs J., 287, 2020
6UCJ
DownloadVisualize
BU of 6ucj by Molmil
proIAPP in DPC Micelles - Two-Conformer Ensemble Refinement, Open Conformer
分子名称: Islet amyloid polypeptide
著者DeLisle, C.F, Malooley, A.L, Banerjee, I, Lorieau, J.L.
登録日2019-09-16
公開日2020-02-26
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Pro-islet amyloid polypeptide in micelles contains a helical prohormone segment.
Febs J., 287, 2020
7CET
DownloadVisualize
BU of 7cet by Molmil
Crystal structure of D-cycloserine-bound form of cysteine desulfurase NifS from Helicobacter pylori
分子名称: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, CHLORIDE ION, Cysteine desulfurase IscS, ...
著者Nakamura, R, Takahashi, Y, Fujishiro, T.
登録日2020-06-24
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
7CEU
DownloadVisualize
BU of 7ceu by Molmil
Crystal structure of L-cycloserine-bound form of cysteine desulfurase NifS from Helicobacter pylori
分子名称: (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL
著者Nakamura, R, Takahashi, Y, Fujishiro, T.
登録日2020-06-24
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
6MVF
DownloadVisualize
BU of 6mvf by Molmil
Crystal structure of FMN-binding beta-glucuronidase from Facaelibacterium prausnitzii L2-6
分子名称: Beta-galactosidase/beta-glucuronidase, FLAVIN MONONUCLEOTIDE
著者Pellock, S.J, Redinbo, M.R.
登録日2018-10-25
公開日2019-01-30
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Discovery and Characterization of FMN-Binding beta-Glucuronidases in the Human Gut Microbiome.
J. Mol. Biol., 431, 2019
8Z4B
DownloadVisualize
BU of 8z4b by Molmil
Crystal structure of LysB22-AspB28 insulin analog at ambient structure
分子名称: CHLORIDE ION, Insulin A chain, Insulin B chain, ...
著者Ayan, E, Demirci, H.
登録日2024-04-17
公開日2024-05-22
最終更新日2025-06-04
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献X-ray crystallographic and hydrogen deuterium exchange studies confirm alternate kinetic models for homolog insulin monomers.
Plos One, 20, 2025
6S5V
DownloadVisualize
BU of 6s5v by Molmil
Crystal structure of the Cap-Midlink region of the H5N1 Influenza A virus polymerase in complex with a Cap-domain binding analogue
分子名称: (1~{S},2~{S},3~{S},6~{R})-2-[[2-[5,7-bis(fluoranyl)-1~{H}-indol-3-yl]-5-fluoranyl-pyrimidin-4-yl]amino]-3,6-dimethyl-cyclohexane-1-carboxylic acid, GLYCEROL, POTASSIUM ION, ...
著者Keown, J.R, Fodor, E, Grimes, J.M.
登録日2019-07-02
公開日2019-11-06
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Design, Synthesis, and Biological Evaluation of Novel Indoles Targeting the Influenza PB2 Cap Binding Region.
J.Med.Chem., 62, 2019
12E8
DownloadVisualize
BU of 12e8 by Molmil
2E8 FAB FRAGMENT
分子名称: IGG1-KAPPA 2E8 FAB (HEAVY CHAIN), IGG1-KAPPA 2E8 FAB (LIGHT CHAIN)
著者Rupp, B, Trakhanov, S.
登録日1998-03-14
公開日1998-08-05
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of a monoclonal 2E8 Fab antibody fragment specific for the low-density lipoprotein-receptor binding region of apolipoprotein E refined at 1.9 A.
Acta Crystallogr.,Sect.D, null, 1999
6MVG
DownloadVisualize
BU of 6mvg by Molmil
Crystal structure of FMN-binding beta-glucuronidase from Ruminococcus gnavus
分子名称: CALCIUM ION, FLAVIN MONONUCLEOTIDE, beta-glucuronidase
著者Pellock, S.J, Redinbo, M.R.
登録日2018-10-25
公開日2019-01-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Discovery and Characterization of FMN-Binding beta-Glucuronidases in the Human Gut Microbiome.
J. Mol. Biol., 431, 2019
4XNI
DownloadVisualize
BU of 4xni by Molmil
X-ray structure of PepTst1
分子名称: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, Di-or tripeptide:H+ symporter, PHOSPHATE ION
著者Huang, C.Y, Olieric, V, Diederichs, K, Wang, M, Caffrey, M.
登録日2015-01-15
公開日2015-06-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献In meso in situ serial X-ray crystallography of soluble and membrane proteins.
Acta Crystallogr.,Sect.D, 71, 2015
7DCN
DownloadVisualize
BU of 7dcn by Molmil
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
分子名称: Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, SULFATE ION, ZINC ION
著者Xu, H, Wang, B, Su, X.D.
登録日2020-10-26
公開日2021-11-03
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.695 Å)
主引用文献Co-evolution-based prediction of metal-binding sites in proteomes by machine learning.
Nat.Chem.Biol., 19, 2023
7DCM
DownloadVisualize
BU of 7dcm by Molmil
Crystal structure of CITX
分子名称: Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, ZINC ION
著者Xu, H, Wang, B, Su, X.D.
登録日2020-10-26
公開日2021-11-03
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.495 Å)
主引用文献Co-evolution-based prediction of metal-binding sites in proteomes by machine learning.
Nat.Chem.Biol., 19, 2023
6UX5
DownloadVisualize
BU of 6ux5 by Molmil
Structure of acrorhagin I from the sea anemone Actinia equina
分子名称: U-actitoxin-Aeq5a
著者Krishnarjuna, B, Sunanda, P, Norton, R.S.
登録日2019-11-06
公開日2020-11-18
最終更新日2024-10-23
実験手法SOLUTION NMR
主引用文献A disulfide-stabilised helical hairpin fold in acrorhagin I: An emerging structural motif in peptide toxins.
J.Struct.Biol., 213, 2020
9GNS
DownloadVisualize
BU of 9gns by Molmil
X-ray structure of Human holo aromatic L-amino acid decarboxylase (AADC) complex with Carbidopa at physiological pH
分子名称: Aromatic-L-amino-acid decarboxylase, CARBIDOPA, PYRIDOXAL-5'-PHOSPHATE, ...
著者Perduca, M, Bisello, G, Bertoldi, M.
登録日2024-09-04
公開日2025-05-14
最終更新日2025-06-04
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献alpha-Hydrazino Acids Inhibit Pyridoxal Phosphate-Dependent Decarboxylases via "Catalytically Correct" Ketoenamine Tautomers: A Special Motif for Chemical Biology and Drug Discovery?
Acs Catalysis, 15, 2025
5LIT
DownloadVisualize
BU of 5lit by Molmil
Structure of the DNA duplex d(AAATTT)2 with the potential antiparasitic drug 6XV at 1.25 A resolution
分子名称: 4-((4,5-dihydro-1H-imidazol-2-yl)amino)-N-(4-((4,5-dihydro-1H-imidazol-2-yl)amino)phenyl)benzamide dihydrochloride, DNA (5'-D(*AP*AP*AP*TP*TP*T)-3'), MAGNESIUM ION
著者Millan, C.R, Dardonville, C, de Koning, H.P, Saperas, N, Lourdes Campos, J.
登録日2016-07-15
公開日2017-06-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Functional and structural analysis of AT-specific minor groove binders that disrupt DNA-protein interactions and cause disintegration of the Trypanosoma brucei kinetoplast.
Nucleic Acids Res., 45, 2017
1AM5
DownloadVisualize
BU of 1am5 by Molmil
THE CRYSTAL STRUCTURE AND PROPOSED AMINO ACID SEQUENCE OF A PEPSIN FROM ATLANTIC COD (GADUS MORHUA)
分子名称: PEPSIN
著者Karlsen, S, Hough, E, Olsen, R.L.
登録日1997-06-23
公開日1997-12-24
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Structure and proposed amino-acid sequence of a pepsin from atlantic cod (Gadus morhua).
Acta Crystallogr.,Sect.D, 54, 1998
6NEE
DownloadVisualize
BU of 6nee by Molmil
Crystal structure of a reconstructed ancestor of Triosephosphate isomerase from eukaryotes
分子名称: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
著者Rodriguez-Romero, A, Schulte-Sasse, M, Fernandez-Velasco, D.A.
登録日2018-12-17
公開日2019-01-09
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural, thermodynamic and catalytic characterization of an ancestral triosephosphate isomerase reveal early evolutionary coupling between monomer association and function.
FEBS J., 286, 2019
9BYJ
DownloadVisualize
BU of 9byj by Molmil
Crystal Structure of Hck in complex with the Src-family kinase inhibitor A-419259
分子名称: 1,2-ETHANEDIOL, 7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine, DIMETHYL SULFOXIDE, ...
著者Selzer, A.M, Alvarado, J.J, Smithgall, T.E.
登録日2024-05-23
公開日2024-10-09
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Cocrystallization of the Src-Family Kinase Hck with the ATP-Site Inhibitor A-419259 Stabilizes an Extended Activation Loop Conformation.
Biochemistry, 63, 2024
9CQE
DownloadVisualize
BU of 9cqe by Molmil
CRYSTAL STRUCTURE OF APO C-TERMINAL HIS-TAG DOG HSP47(36-418) IN A P 1 21 1 CRYSTAL FORM
分子名称: Serpin H1
著者Sheriff, S.
登録日2024-07-19
公開日2024-10-30
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.177 Å)
主引用文献Improving the diffraction quality of heat-shock protein 47 crystals.
Acta Crystallogr.,Sect.F, 80, 2024
3ES7
DownloadVisualize
BU of 3es7 by Molmil
Crystal structure of divergent enolase from Oceanobacillus Iheyensis complexed with Mg and L-malate.
分子名称: (2S)-2-hydroxybutanedioic acid, MAGNESIUM ION, Muconate cycloisomerase
著者Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2008-10-04
公開日2008-10-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Computation-facilitated assignment of the function in the enolase superfamily: a regiochemically distinct galactarate dehydratase from Oceanobacillus iheyensis .
Biochemistry, 48, 2009
3ES8
DownloadVisualize
BU of 3es8 by Molmil
Crystal structure of divergent enolase from Oceanobacillus Iheyensis complexed with Mg and L-malate.
分子名称: (2S)-2-hydroxybutanedioic acid, MAGNESIUM ION, Muconate cycloisomerase
著者Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2008-10-04
公開日2008-10-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Computation-facilitated assignment of the function in the enolase superfamily: a regiochemically distinct galactarate dehydratase from Oceanobacillus iheyensis .
Biochemistry, 48, 2009

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon