PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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3DTK	Crystal structure of the IRRE protein, a central regulator of DNA damage repair in deinococcaceae 分子名称: CHLORIDE ION, IRRE PROTEIN, ZINC ION 著者 Vujicic-Zagar, A, Dulermo, R, Le Gorrec, M, Vannier, F, Servant, P, Sommer, S, de Groot, A, Serre, L. 登録日 2008-07-15 公開日 2009-02-17 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 Crystal structure of the IrrE protein, a central regulator of DNA damage repair in deinococcaceae J.Mol.Biol., 386, 2009
3DTI	Crystal structure of the IRRE protein, a central regulator of DNA damage repair in deinococcaceae 分子名称: IRRE protein, ZINC ION 著者 Vujicic-Zagar, A, Dulermo, R, Le Gorrec, M, Vannier, F, Servant, P, Sommer, S, De Groot, A, Serre, L. 登録日 2008-07-15 公開日 2009-02-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Crystal structure of the IrrE protein, a central regulator of DNA damage repair in deinococcaceae J.Mol.Biol., 386, 2009
3DTE	Crystal structure of the IRRE protein, a central regulator of DNA damage repair in deinococcaceae 分子名称: IrrE protein 著者 Vujicic-Zagar, A, Dulermo, R, Le Gorrec, M, Vannier, F, Servant, P, Sommer, S, De Groot, A, Serre, L. 登録日 2008-07-15 公開日 2009-02-10 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of the IrrE protein, a central regulator of DNA damage repair in deinococcaceae J.Mol.Biol., 386, 2009
1YO5	Analysis of the 2.0A crystal structure of the protein-DNA complex of human PDEF Ets domain bound to the prostate specific antigen regulatory site 分子名称: Enhancer site of Prostate Specific Antigen Promoter Region, SAM pointed domain containing ets transcription factor 著者 Wang, Y, Feng, L, Said, M, Balderman, S, Fayazi, Z, Liu, Y, Ghosh, D, Gulick, A.M. 登録日 2005-01-26 公開日 2005-05-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Analysis of the 2.0 A Crystal Structure of the Protein-DNA Complex of the Human PDEF Ets Domain Bound to the Prostate Specific Antigen Regulatory Site Biochemistry, 44, 2005
6NFM	Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G 分子名称: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3B 著者 Shi, K, Aihara, H. 登録日 2018-12-20 公開日 2019-12-25 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.53 Å) 主引用文献 Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B Faseb Bioadv, 2, 2020
6NFL	Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G complexed with 2-HP 分子名称: 1,2-ETHANEDIOL, 1,3-diazinan-2-one, CHLORIDE ION, ... 著者 Shi, K, Orellana, K, Aihara, H. 登録日 2018-12-20 公開日 2019-12-25 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.731 Å) 主引用文献 Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B Faseb Bioadv, 2, 2020
6NFK	Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G bound to iodide 分子名称: 1,2-ETHANEDIOL, DNA dC->dU-editing enzyme APOBEC-3B, IODIDE ION 著者 Shi, K, Orellana, K, Aihara, H. 登録日 2018-12-20 公開日 2019-12-25 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B Faseb Bioadv, 2, 2020
7ZQM	d(CGCGCG)2 Z-DNA AT 3000 BARS (300 MPa) 分子名称: MAGNESIUM ION, Z-DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') 著者 Prange, T, Colloc'h, N, Girard, E. 登録日 2022-05-01 公開日 2023-03-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.41 Å) 主引用文献 Behavior of B- and Z-DNA Crystals under High Hydrostatic Pressure Crystals, 2022
2KMG	The structure of the KlcA and ArdB proteins show a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro 分子名称: KlcA 著者 Serfiotis-Mitsa, D, Herbert, A.P, Roberts, G.A, Soares, D.C, White, J.H, Blakely, G.W, Uhrin, D, Dryden, D.T.F. 登録日 2009-07-28 公開日 2009-12-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The structure of the KlcA and ArdB proteins reveals a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro Nucleic Acids Res., 38, 2010
6IO9	The structure of apo-UdgX 分子名称: IRON/SULFUR CLUSTER, Phage SPO1 DNA polymerase-related protein, SULFATE ION 著者 Xie, W, Tu, J. 登録日 2018-10-29 公開日 2019-07-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Suicide inactivation of the uracil DNA glycosylase UdgX by covalent complex formation. Nat.Chem.Biol., 15, 2019
4R8J	d(TCGGCGCCGA) with lambda-[Ru(TAP)2(dppz)]2+ soaked in D2O 分子名称: BARIUM ION, CHLORIDE ION, DNA (5'-D(*(THM)P*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), ... 著者 Hall, J.P, Gurung, S.P, Winter, G.W, Cardin, C.J. 登録日 2014-09-02 公開日 2015-10-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.21 Å) 主引用文献 Monitoring one-electron photo-oxidation of guanine in DNA crystals using ultrafast infrared spectroscopy. Nat Chem, 7, 2015
3OOR	I-SceI mutant (K86R/G100T)complexed with C/G+4 DNA substrate 分子名称: 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*CP*GP*GP*GP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*GP*GP*TP*TP*AP*TP*CP*CP*CP*TP*AP*GP*CP*GP*T)-3', CALCIUM ION, ... 著者 Joshi, R, Chen, J.-H, Golden, B.L, Gimble, F.S. 登録日 2010-08-31 公開日 2010-11-17 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Evolution of I-SceI Homing Endonucleases with Increased DNA Recognition Site Specificity. J.Mol.Biol., 405, 2011
1JES	Crystal Structure of a Copper-Mediated Base Pair in DNA 分子名称: 5'-D(*CP*GP*CP*GP*(DPY)P*AP*TP*(DRP)P*CP*GP*CP*G)-3', COPPER (II) ION 著者 Atwell, S, Meggers, E, Spraggon, G, Schultz, P.G. 登録日 2001-06-18 公開日 2001-11-23 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of a Copper-Mediated Base Pair in DNA J.Am.Chem.Soc., 123, 2001
1B77	BUILDING A REPLISOME STRUCTURE FROM INTERACTING PIECES: A SLIDING CLAMP COMPLEXED WITH AN INTERACTION PEPTIDE FROM DNA POLYMERASE 分子名称: PROTEIN (SLIDING CLAMP) 著者 Shamoo, Y, Steitz, T.A. 登録日 1999-01-27 公開日 1999-02-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell(Cambridge,Mass.), 99, 1999
6IOA	The structure of UdgX in complex with uracil 分子名称: IRON/SULFUR CLUSTER, Phage SPO1 DNA polymerase-related protein, SULFATE ION, ... 著者 Xie, W, Tu, J. 登録日 2018-10-29 公開日 2019-07-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Suicide inactivation of the uracil DNA glycosylase UdgX by covalent complex formation. Nat.Chem.Biol., 15, 2019
7MK1	Structure of a protein-modified aptamer complex 分子名称: Antiviral innate immune response receptor RIG-I, DNA (41-MER), MAGNESIUM ION, ... 著者 Ren, X, Pyle, A.M. 登録日 2021-04-21 公開日 2021-11-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Evolving A RIG-I Antagonist: A Modified DNA Aptamer Mimics Viral RNA. J.Mol.Biol., 433, 2021
3OOL	I-SceI complexed with C/G+4 DNA substrate 分子名称: 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*CP*GP*GP*GP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*GP*GP*TP*TP*AP*TP*CP*CP*CP*TP*AP*GP*CP*GP*T)-3', CALCIUM ION, ... 著者 Joshi, R, Chen, J.-H, Golden, B.L, Gimble, F.S. 登録日 2010-08-31 公開日 2010-11-17 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Evolution of I-SceI Homing Endonucleases with Increased DNA Recognition Site Specificity. J.Mol.Biol., 405, 2011
3KJV	HIV-1 reverse transcriptase in complex with DNA 分子名称: 5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DOC))-3', 5'-D(*AP*TP*GP*GP*TP*GP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', MAGNESIUM ION, ... 著者 Lansdon, E.B. 登録日 2009-11-03 公開日 2010-03-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Visualizing the molecular interactions of a nucleotide analog, GS-9148, with HIV-1 reverse transcriptase-DNA complex. J.Mol.Biol., 397, 2010
1ZLK	Crystal Structure of the Mycobacterium tuberculosis Hypoxic Response Regulator DosR C-terminal Domain-DNA Complex 分子名称: 5'-D(*CP*GP*TP*GP*GP*CP*CP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*AP*CP*TP*TP*TP*AP*GP*TP*CP*CP*CP*CP*AP*AP*AP*GP*CP*GP*CP*GP*GP*GP*CP*CP*AP*T)-3', 5'-D(*GP*GP*CP*CP*CP*GP*CP*GP*CP*TP*TP*TP*GP*GP*GP*GP*AP*CP*TP*AP*AP*AP*GP*TP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*GP*GP*CP*CP*AP*CP*GP*AP*T)-3', Dormancy Survival Regulator 著者 Wisedchaisri, G, Wu, M, Rice, A.E, Roberts, D.M, Sherman, D.R, Hol, W.G.J. 登録日 2005-05-06 公開日 2006-01-31 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structures of Mycobacterium tuberculosis DosR and DosR-DNA complex involved in gene activation during adaptation to hypoxic latency. J.Mol.Biol., 354, 2005
3A1A	Crystal Structure of the DNMT3A ADD domain 分子名称: 1,2-ETHANEDIOL, DNA (cytosine-5)-methyltransferase 3A, ZINC ION 著者 Otani, J, Arita, K, Ariyoshi, M, Shirakawa, M. 登録日 2009-03-28 公開日 2009-11-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain Embo Rep., 10, 2009
6A9W	Structure of the bifunctional DNA primase-polymerase from phage NrS-1 分子名称: Primase 著者 Guo, H.J, Li, M.J, Wang, T.L, Wu, H, Zhou, H, Xu, C.Y, Liu, X.P, Yu, F, He, J.H. 登録日 2018-07-16 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure and biochemical studies of the bifunctional DNA primase-polymerase from phage NrS-1. Biochem. Biophys. Res. Commun., 510, 2019
2DPB	Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine 分子名称: (6-AMINOHEXYL)CARBAMIC ACID, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3'), POTASSIUM ION 著者 Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2006-05-08 公開日 2007-04-17 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules Nucleic Acids Res., 35, 2007
2ALC	ETHANOL REGULON TRANSCRIPTIONAL ACTIVATOR DNA-BINDING DOMAIN FROM ASPERGILLUS NIDULANS 分子名称: PROTEIN (ETHANOL REGULON TRANSCRIPTIONAL ACTIVATOR), ZINC ION 著者 Cerdan, R, Cahuzac, B, Felenbok, B, Guittet, E. 登録日 1999-01-20 公開日 2000-01-21 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 NMR solution structure of AlcR (1-60) provides insight in the unusual DNA binding properties of this zinc binuclear cluster protein. J.Mol.Biol., 295, 2000
8B9N	Crystal structure of NEI domain of mouse NEIL3 trapped in covalent complex with ssDNA with abasic site 分子名称: Endonuclease 8-like 3, ZINC ION, ssDNA with abasic site 著者 Klima, M, Boura, E, Silhan, J. 登録日 2022-10-06 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of NEI domain of mouse NEIL3 trapped in covalent complex with ssDNA with abasic site To Be Published
2YW7	Crystal structure of C-terminal deletion mutant of Mycobacterium smegmatis Dps 分子名称: Starvation-induced DNA protecting protein 著者 Roy, S, Saraswathi, R, Gupta, S, Sekar, K, Chatterji, D, Vijayan, M. 登録日 2007-04-19 公開日 2007-07-17 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Role of N and C-terminal Tails in DNA Binding and Assembly in Dps: Structural Studies of Mycobacterium smegmatis Dps Deletion Mutants J.Mol.Biol., 370, 2007

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