PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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7UL8	[T:Au+:T--pH 11] Metal-mediated DNA base pair in tensegrity triangle 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-04-04 公開日 2023-04-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (4.22 Å) 主引用文献 Metal-Mediated DNA Nanotechnology in 3D: Structural Library by Templated Diffraction. Adv Mater, 35, 2023
479D	CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION 分子名称: DNA (5'-D(*CP*TP*CP*TP*TP*CP*TP*TP*C)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') 著者 Xiong, Y, Sundaralingam, M. 登録日 1999-07-08 公開日 2000-05-15 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of a DNA.RNA hybrid duplex with a polypurine RNA r(gaagaagag) and a complementary polypyrimidine DNA d(CTCTTCTTC). Nucleic Acids Res., 28, 2000
2E0G	DnaA N-terminal domain 分子名称: Chromosomal replication initiator protein dnaA 著者 Abe, Y, Katayama, T, Ueda, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-10-07 公開日 2007-05-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure and Function of DnaA N-Terminal Domains: Specific Sites and Mechanisms in Inter-DnaA Interaction and in DnaB Helicase Loading on oriC To be Published
4C2U	Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, Form 1 分子名称: DNA HELICASE II, FOR25, GLYCEROL, ... 著者 Stelter, M, Acajjaoui, S, McSweeney, S, Timmins, J. 登録日 2013-08-20 公開日 2013-10-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One, 8, 2013
4C2T	Crystal structure of full length Deinococcus radiodurans UvrD in complex with DNA 分子名称: DNA HELICASE II, DNA STRAND FOR28, DNA STRAND REV28, ... 著者 Stelter, M, Acajjaoui, S, McSweeney, S, Timmins, J. 登録日 2013-08-20 公開日 2013-10-30 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.997 Å) 主引用文献 Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One, 8, 2013
3JX7	Bacillus cereus alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-METHYLADENINE analog 分子名称: DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*(DZM)P*AP*CP*GP*GP*G)-3'), alkylpurine DNA glycosylase AlkD 著者 Rubinson, E.H, Eichman, B.F. 登録日 2009-09-18 公開日 2010-09-22 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 An unprecedented nucleic acid capture mechanism for excision of DNA damage. Nature, 468, 2010
3RHI	DNA-binding protein HU from Bacillus anthracis 分子名称: DNA-binding protein HU 著者 Osipiuk, J, Makowska-Grzyska, M, Hasseman, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2011-04-11 公開日 2011-04-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 DNA-binding protein HU from Bacillus anthracis. To be Published
1NOM	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF MNCL2 (5 MILLIMOLAR) 分子名称: DNA POLYMERASE BETA, MANGANESE (II) ION 著者 Pelletier, H, Sawaya, M.R. 登録日 1996-04-19 公開日 1996-11-15 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
7WB0	PlmCasX-sgRNAv1-dsDNA ternary complex at nts loading state with flexible H2 domain 分子名称: NTS-DNA, RNA (115-MER), TS-DNA, ... 著者 Zhang, S, Liu, J.J.G. 登録日 2021-12-15 公開日 2022-03-16 最終更新日 2022-03-30 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
4C30	Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, form 2 分子名称: DNA HELICASE II, DNA STRAND FOR25, DNA STRAND REV25, ... 著者 Stelter, M, Acajjaoui, S, McSweeney, S, Timmins, J. 登録日 2013-08-21 公開日 2013-10-30 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One, 8, 2013
7WAY	PlmCasX-sgRNAv1-dsDNA ternary complex at nts loading state 分子名称: DNA (27-MER), DNA (33-MER), RNA, ... 著者 Zhang, S, Liu, J.J.G. 登録日 2021-12-15 公開日 2022-03-16 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
7WB1	PlmCasX-sgRNAv2-dsDNA ternary complex at nts loading state 分子名称: NTS-DNA, RNA (121-MER), TS-DNA, ... 著者 Zhang, S, Liu, J.J.G. 登録日 2021-12-15 公開日 2022-03-16 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
4ED6	Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 6.7 for 15 hr, Sideway translocation 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA polymerase eta, ... 著者 Nakamura, T, Zhao, Y, Yang, W. 登録日 2012-03-27 公開日 2012-07-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.211 Å) 主引用文献 Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
3NIC	DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F 分子名称: DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3'), Eco29kIR, ... 著者 Mak, A.N.S, Lambert, A.R, Stoddard, B.L. 登録日 2010-06-15 公開日 2010-09-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Folding, DNA Recognition, and Function of GIY-YIG Endonucleases: Crystal Structures of R.Eco29kI. Structure, 18, 2010
221D	INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA 分子名称: DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') 著者 Gao, Y.-G, Robinson, H, Van Boom, J.H, Wang, A.H.-J. 登録日 1995-06-26 公開日 1996-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA. Biophys.J., 69, 1995
138D	A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM 分子名称: DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3') 著者 Ramakrishnan, B, Sundaralingam, M. 登録日 1993-09-15 公開日 1994-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures. Biochemistry, 32, 1993
137D	A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM 分子名称: DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3') 著者 Ramakrishnan, B, Sundaralingam, M. 登録日 1993-09-15 公開日 1994-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures. Biochemistry, 32, 1993
3MX4	DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q 分子名称: DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3'), Eco29kIR 著者 Mak, A.N.S, Lambert, A.R, Stoddard, B.L. 登録日 2010-05-06 公開日 2010-09-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Folding, DNA Recognition, and Function of GIY-YIG Endonucleases: Crystal Structures of R.Eco29kI. Structure, 18, 2010
5W7O	2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant 分子名称: DNA (5'-D(*AP*TP*GP*(US3)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ... 著者 Fang, Z, Yang, F, Huang, Z. 登録日 2017-06-20 公開日 2017-06-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 2-Se-T-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant To Be Published
3OQG	Restriction endonuclease HPY188I in complex with substrate DNA 分子名称: CHLORIDE ION, DNA 5'-D(*GP*AP*TP*CP*TP*GP*AP*AP*C)-3', DNA 5'-D(*GP*TP*TP*CP*AP*GP*AP*TP*C)-3', ... 著者 Sokolowska, M, Czapinska, H, Bochtler, M. 登録日 2010-09-03 公開日 2010-10-20 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis. Nucleic Acids Res., 39, 2011
1B4Y	STRUCTURE AND MECHANISM OF FORMATION OF THE H-Y5 ISOMER OF AN INTRAMOLECULAR DNA TRIPLE HELIX. 分子名称: DNA (H-Y5 TRIPLE HELIX) 著者 Van Dongen, M.J.P, Doreleijers, J.F, Van Der Marel, G.A, Van Boom, J.H, Hilbers, C.W, Wijmenga, S.S. 登録日 1998-12-30 公開日 1999-09-13 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Structure and mechanism of formation of the H-y5 isomer of an intramolecular DNA triple helix. Nat.Struct.Biol., 6, 1999
1Q32	Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase 分子名称: tyrosyl-DNA phosphodiesterase 著者 He, X, Babaoglu, K, Price, A, Nitiss, K.C, Nitiss, J.L, White, S.W. 登録日 2003-07-28 公開日 2004-09-07 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 Mutation of a conserved active site residue converts tyrosyl-DNA phosphodiesterase I into a DNA topoisomerase I-dependent poison J.Mol.Biol., 372, 2007
1UGI	URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN 分子名称: IMIDAZOLE, SULFATE ION, URACIL-DNA GLYCOSYLASE INHIBITOR 著者 Putnam, C.D, Arvai, A.S, Mol, C.D, Tainer, J.A. 登録日 1998-11-04 公開日 1999-03-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase J.Mol.Biol., 287, 1999
5US2	2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant 分子名称: DNA (5'-D(*AP*(US3)P*GP*TP*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ... 著者 Fang, Z, Yang, F, Huang, Z. 登録日 2017-02-13 公開日 2017-03-08 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 2-Se-T-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant To Be Published
6IUE	DNA helical wire containing Hg(II) 分子名称: DNA (5'-D(*TP*TP*TP*GP*C)-3'), MERCURY (II) ION 著者 Ono, A, Kanazawa, H, Ito, H, Goto, M, Nakamura, K, Saneyoshi, H, Kondo, J. 登録日 2018-11-28 公開日 2019-10-16 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 A Novel DNA Helical Wire Containing HgII-Mediated T:T and T:G Pairs. Angew.Chem.Int.Ed.Engl., 58, 2019

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