PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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3HOT	Crystal structure of the Mos1 mariner paired end complex with Mn 分子名称: MANGANESE (II) ION, Mos1 NTS inverted repeat DNA, Mos1 TS inverted repeat DNA, ... 著者 Richardson, J.M, Walkinshaw, M.D. 登録日 2009-06-03 公開日 2009-09-22 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote Cell(Cambridge,Mass.), 138, 2009
6TAZ	Timeless couples G quadruplex detection with processing by DDX11 during DNA replication 分子名称: Protein timeless homolog 著者 Lerner Koch, L, Holzer, S, Kilkenny, M.L, Murat, P, Svikovic, S, Schiavone, D, Bittleston, A, Maman, J.D, Branzei, D, Stott, K, Pellegrini, L, Sale, E.J. 登録日 2019-10-31 公開日 2020-07-01 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Timeless couples G-quadruplex detection with processing by DDX11 helicase during DNA replication. Embo J., 39, 2020
6TOB	Structural and DNA Binding Properties of Mycobacterial Integration Host Factor mIHF 分子名称: Integration host factor MIHF 著者 Herrmann, T. 登録日 2019-12-11 公開日 2019-12-25 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Structural and DNA binding properties of mycobacterial integration host factor mIHF. J.Struct.Biol., 209, 2020
4QZ8	Mouse Tdt in complex with a DSB substrate, C-G base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*G)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
4QZC	Mouse Tdt, F405A mutant, in complex with a DSB substrate, C-G base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*G)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
4QZG	Mouse Tdt, F401A mutant, in complex with a DSB substrate, C-C base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*C)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
4YPR	Crystal Structure of D144N MutY bound to its anti-substrate 分子名称: A/G-specific adenine glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(*T*GP*TP*CP*CP*AP*CP*GP*TP*CP*T)-3'), ... 著者 Wang, L, Lee, S, Verdine, G.L. 登録日 2015-03-13 公開日 2015-05-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase. J.Biol.Chem., 290, 2015
2WT7	Crystal structure of the bZIP heterodimeric complex MafB:cFos bound to DNA 分子名称: MODIFIED T-MARE MOTIF, PHOSPHATE ION, PROTO-ONCOGENE PROTEIN C-FOS, ... 著者 Pogenberg, V, Holton, S, Wilmanns, M. 登録日 2009-09-11 公開日 2010-09-29 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Design of a bZIP Transcription Factor with Homo/Heterodimer-Induced DNA-Binding Preference. Structure, 22, 2014
2WBS	Crystal structure of the zinc finger domain of Klf4 bound to its target DNA 分子名称: 5'-D(*GP*AP*GP*GP*CP*GP*CP)-3', 5'-D(*GP*CP*GP*CP*CP*TP*CP)-3', GLYCEROL, ... 著者 Zocher, G, Schuetz, A, Carstanjen, D, Heinemann, U. 登録日 2009-03-03 公開日 2010-04-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The Structure of the Klf4 DNA-Binding Domain Links to Self-Renewal and Macrophage Differentiation. Cell.Mol.Life Sci., 68, 2011
3HOS	Crystal structure of the mariner Mos1 paired end complex with Mg 分子名称: MAGNESIUM ION, Mos1 NTS inverted repeat DNA, Mos1 TS inverted repeat DNA, ... 著者 Richardson, J.M, Walkinshaw, M.D. 登録日 2009-06-03 公開日 2009-09-22 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote Cell(Cambridge,Mass.), 138, 2009
3BS3	Crystal structure of a putative DNA-binding protein from Bacteroides fragilis 分子名称: 1,2-ETHANEDIOL, Putative DNA-binding protein, SULFATE ION 著者 Cuff, M.E, Bigelow, L, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2007-12-21 公開日 2008-01-15 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 The structure of a putative DNA-binding protein from Bacteroides fragilis. TO BE PUBLISHED
1Q3U	Crystal structure of a wild-type Cre recombinase-loxP synapse: pre-cleavage complex 分子名称: Cre recombinase, IODIDE ION, MAGNESIUM ION, ... 著者 Ennifar, E, Meyer, J.E.W, Buchholz, F, Stewart, A.F, Suck, D. 登録日 2003-08-01 公開日 2003-09-16 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation Nucleic Acids Res., 31, 2003
5ZNF	ALTERNATING ZINC FINGERS IN THE HUMAN MALE ASSOCIATED PROTEIN ZFY: 2D NMR STRUCTURE OF AN EVEN FINGER AND IMPLICATIONS FOR "JUMPING-LINKER" DNA RECOGNITION 分子名称: ZINC FINGER, ZINC ION 著者 Kochoyan, M, Keutmann, H.T, Weiss, M.A. 登録日 1991-08-22 公開日 1994-01-31 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Alternating zinc fingers in the human male associated protein ZFY: 2D NMR structure of an even finger and implications for "jumping-linker" DNA recognition. Biochemistry, 30, 1991
1IUF	LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN 分子名称: centromere abp1 protein 著者 Kikuchi, J, Iwahara, J, Kigawa, T, Murakami, Y, Okazaki, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2002-03-04 公開日 2002-06-05 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure determination of the two DNA-binding domains in the Schizosaccharomyces pombe Abp1 protein by a combination of dipolar coupling and diffusion anisotropy restraints. J.Biomol.NMR, 22, 2002
1NTC	SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF NTRC WITH THREE ALANINE SUBSTITUTIONS 分子名称: PROTEIN (NITROGEN REGULATION PROTEIN (NTRC)) 著者 Pelton, J.G, Kustu, S, Wemmer, D.E. 登録日 1999-05-26 公開日 1999-06-04 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure of the DNA-binding domain of NtrC with three alanine substitutions. J.Mol.Biol., 292, 1999
4QZA	Mouse Tdt in complex with a DSB substrate, C-C base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*C)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
4QZD	Mouse Tdt, F405A mutant, in complex with a DSB substrate, C-C base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*C)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
4QZH	Mouse Tdt, F401A mutant, in complex with a DSB substrate, C-T base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*T)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
1MP7	A Third Complex of Post-Activated Neocarzinostatin Chromophore with DNA. Bulge DNA Binding from the Minor Groove 分子名称: 5'-D(*GP*CP*CP*AP*GP*AP*GP*AP*GP*C)-3', [(R)-4-((1,3-DIOXOLANE-2-OXY)-4-(S)-YL)-4-HYDROXY]-(R)-10-(2-METHYLAMINO-5-METHYL-2,6-DIDEOXYGALACTOPYRANOSYL-OXY)-(R)-11-(2-HYDROXY-5-METHYL-7-METHOXY-1-NAPHTHOYL-OXY)-(R)-12-S-GLUTATHIONYL-4,10,11,12-TETRAHYDROINDACENE 著者 Kwon, Y, Xi, Z, Kappen, L.S, Goldberg, I.H, Gao, X. 登録日 2002-09-11 公開日 2003-02-18 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 New Complex of Post-Activated Neocarzinostatin Chromophore with DNA: Bulge DNA Binding from the Minor Groove Biochemistry, 42, 2003
1DP3	SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF THE TRAM PROTEIN 分子名称: TRAM PROTEIN 著者 Stockner, T, Plugariu, C, Koraimann, G, Hoegenauer, G, Bermel, W, Prytulla, S, Sterk, H. 登録日 1999-12-23 公開日 2001-04-04 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the DNA-binding domain of TraM. Biochemistry, 40, 2001
2LRR	Solution structure of the R3H domain from human Smubp-2 in complex with 2'-deoxyguanosine-5'-monophosphate 分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, DNA-binding protein SMUBP-2 著者 Jaudzems, K, Zhulenkovs, D, Otting, G, Liepinsh, E. 登録日 2012-04-12 公開日 2012-10-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Basis for 5'-End-Specific Recognition of Single-Stranded DNA by the R3H Domain from Human Smubp-2 J.Mol.Biol., 12, 2012
5XEW	Crystal structure of the [Ni2+-(chromomycin A3)2]-CCG repeats complex 分子名称: (1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose, 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate, 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol, ... 著者 Tseng, W.H, Wu, P.C, Hou, M.H. 登録日 2017-04-06 公開日 2017-06-21 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.751 Å) 主引用文献 Induced-Fit Recognition of CCG Trinucleotide Repeats by a Nickel-Chromomycin Complex Resulting in Large-Scale DNA Deformation Angew. Chem. Int. Ed. Engl., 56, 2017
2M2U	Binary complex of African Swine Fever Virus Pol X with MgdGTP 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Repair DNA polymerase X 著者 Wu, W, Su, M, Tsai, M. 登録日 2013-01-03 公開日 2014-04-02 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 How a low-fidelity DNA polymerase chooses non-Watson-Crick from Watson-Crick incorporation. J.Am.Chem.Soc., 136, 2014
1R7J	Crystal structure of the DNA-binding protein Sso10a from Sulfolobus solfataricus 分子名称: Conserved hypothetical protein Sso10a 著者 Chen, L, Chen, L.R, Zhou, X.E, Wang, Y, Kahsai, M.A, Clark, A.T, Edmondson, S.P, Liu, Z.-J, Rose, J.P, Wang, B.C, Shriver, J.W, Meehan, E.J, Southeast Collaboratory for Structural Genomics (SECSG) 登録日 2003-10-21 公開日 2004-07-20 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 The hyperthermophile protein Sso10a is a dimer of winged helix DNA-binding domains linked by an antiparallel coiled coil rod. J.Mol.Biol., 341, 2004
3V7L	Apo Structure of Rat DNA polymerase beta K72E variant 分子名称: CHLORIDE ION, DNA polymerase beta, SODIUM ION, ... 著者 Rangarajan, S, Jaeger, J. 登録日 2011-12-21 公開日 2013-01-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.66 Å) 主引用文献 Crystallographic studies of K72E mutant DNA polymerase explain loss of lyase function and reveal changes in the overall conformational state of the polymerase domain To be Published

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