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8J9F
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Structure of STG-hydrolyzing beta-glucosidase 1 (PSTG1)
分子名称: Beta-glucosidase, GLYCEROL
著者Yanai, T, Imaizumi, R, Takahashi, Y, Katsumura, E, Yamamoto, M, Nakayama, T, Yamashita, S, Takeshita, K, Sakai, N, Matsuura, H.
登録日2023-05-03
公開日2024-04-10
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structural insights into a bacterial beta-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: toward the understanding of the aglycone recognition mechanism by the C-terminal lid domain.
J.Biochem., 174, 2023
8J81
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MDM2 bound with a peptoid
分子名称: (2S)-2-[[(2S)-2-[(6-chloranyl-1H-indol-3-yl)methyl-[(2S)-2-[[(2S)-2-[ethanoyl-(phenylmethyl)amino]propanoyl]-methyl-amino]propanoyl]amino]propanoyl]-methyl-amino]-N-(3,3-dimethylbutyl)-N-[(2S)-1-oxidanylidene-1-piperazin-1-yl-propan-2-yl]propanamide, CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2
著者Yokomine, M, Fukuda, Y, Ago, H, Matsuura, H, Ueno, G, Nagatoishi, S, Yamamoto, M, Tsumoto, K, Jumpei, M, Sando, S.
登録日2023-04-28
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献A structural and physicochemical study of how a peptoid binds to a protein
To Be Published
1JDC
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MUTANT (E219Q) MALTOTETRAOSE-FORMING EXO-AMYLASE COCRYSTALLIZED WITH MALTOTETRAOSE (CRYSTAL TYPE 1)
分子名称: 1,4-ALPHA MALTOTETRAHYDROLASE, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Yoshioka, Y, Hasegawa, K, Matsuura, Y, Katsube, Y, Kubota, M.
登録日1997-06-16
公開日1997-10-15
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of a mutant maltotetraose-forming exo-amylase cocrystallized with maltopentaose.
J.Mol.Biol., 271, 1997
1JDD
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MUTANT (E219Q) MALTOTETRAOSE-FORMING EXO-AMYLASE COCRYSTALLIZED WITH MALTOTETRAOSE (CRYSTAL TYPE 2)
分子名称: 1,4-ALPHA MALTOTETRAHYDROLASE, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Yoshioka, Y, Hasegawa, K, Matsuura, Y, Katsube, Y, Kubota, M.
登録日1997-06-16
公開日1997-10-15
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of a mutant maltotetraose-forming exo-amylase cocrystallized with maltopentaose.
J.Mol.Biol., 271, 1997
1BF2
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STRUCTURE OF PSEUDOMONAS ISOAMYLASE
分子名称: CALCIUM ION, ISOAMYLASE
著者Katsuya, Y, Mezaki, Y, Kubota, M, Matsuura, Y.
登録日1998-05-26
公開日1998-08-12
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Three-dimensional structure of Pseudomonas isoamylase at 2.2 A resolution.
J.Mol.Biol., 281, 1998
1BFG
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BU of 1bfg by Molmil
CRYSTAL STRUCTURE OF BASIC FIBROBLAST GROWTH FACTOR AT 1.6 ANGSTROMS RESOLUTION
分子名称: BASIC FIBROBLAST GROWTH FACTOR
著者Kitagawa, Y, Ago, H, Katsube, Y, Fujishima, A, Matsuura, Y.
登録日1993-04-15
公開日1994-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of basic fibroblast growth factor at 1.6 A resolution.
J.Biochem.(Tokyo), 110, 1991
1BGI
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ORTHORHOMBIC LYSOZYME CRYSTALLIZED AT HIGH TEMPERATURE (310K)
分子名称: CHLORIDE ION, LYSOZYME
著者Oki, H, Matsuura, Y, Komatsu, H, Chernov, A.A.
登録日1998-05-28
公開日1998-10-28
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Refined structure of orthorhombic lysozyme crystallized at high temperature: correlation between morphology and intermolecular contacts.
Acta Crystallogr.,Sect.D, 55, 1999
8KGA
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SlNDPS1-AtcPT4 Chimera
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Dimethylallylcistransferase CPT1, ...
著者Suenaga-Hiromori, M, Ishii, T, Imaizumi, R, Takeshita, K, Yanai, T, Matsuura, H, Sakai, N, Yamaguchi, H, Yanbe, F, Waki, T, Tozawa, Y, Miyagi-Inoue, Y, Yamamoto, M, Kataoka, K, Nakayama, T, Yamashita, S, Takahashi, S.
登録日2023-08-18
公開日2024-08-21
実験手法X-RAY DIFFRACTION (2.182 Å)
主引用文献Biosynthesising various rubber-like polymers by reconstituting prenyltransferases on Hevea rubber particles: molecular and structural bases of the versatile system
To Be Published
8KGB
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SlNDPS1-AtcPT4 Chimera complexed with GSPP, Mg2+, and IPP
分子名称: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Dimethylallylcistransferase CPT1, chloroplastic,Dehydrodolichyl diphosphate synthase 2, ...
著者Suenaga-Hiromori, M, Ishii, T, Imaizumi, R, Takeshita, K, Yanai, T, Matsuura, H, Sakai, N, Yamaguchi, H, Yanbe, F, Waki, T, Tozawa, Y, Miyagi-Inoue, Y, Yamamoto, M, Kataoka, K, Nakayama, T, Yamashita, S, Takahashi, S.
登録日2023-08-18
公開日2024-08-21
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献A versatile system for enzymatic synthesis of natural and unnatural polyisoprenoids on rubber particles
To Be Published
1FLE
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CRYSTAL STRUCTURE OF ELAFIN COMPLEXED WITH PORCINE PANCREATIC ELASTASE
分子名称: ELAFIN, ELASTASE
著者Tsunemi, M, Matsuura, Y, Sakakibara, S, Katsube, Y.
登録日1996-07-04
公開日1997-01-11
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of an elastase-specific inhibitor elafin complexed with porcine pancreatic elastase determined at 1.9 A resolution.
Biochemistry, 35, 1996
1JDA
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MALTOTETRAOSE-FORMING EXO-AMYLASE
分子名称: 1,4-ALPHA MALTOTETRAHYDROLASE, CALCIUM ION
著者Yoshioka, Y, Hasegawa, K, Matsuura, Y, Katsube, Y, Kubota, M.
登録日1997-06-16
公開日1997-10-15
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of a mutant maltotetraose-forming exo-amylase cocrystallized with maltopentaose.
J.Mol.Biol., 271, 1997
5WR2
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Thermolysin, SFX liganded form with oil-based carrier
分子名称: CALCIUM ION, N-[(benzyloxy)carbonyl]-L-aspartic acid, Thermolysin, ...
著者Kunishima, N, Naitow, H, Matsuura, Y.
登録日2016-11-29
公開日2017-08-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5WR4
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Thermolysin, SFX unliganded form with oil-based carrier
分子名称: CALCIUM ION, Thermolysin, ZINC ION
著者Kunishima, N, Naitow, H, Matsuura, Y.
登録日2016-11-29
公開日2017-08-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5WR5
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Thermolysin, liganded form with cryo condition 1
分子名称: CALCIUM ION, N-[(benzyloxy)carbonyl]-L-aspartic acid, TETRAETHYLENE GLYCOL, ...
著者Kunishima, N, Naitow, H, Matsuura, Y.
登録日2016-11-29
公開日2017-08-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5WR3
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Thermolysin, SFX liganded form with water-based carrier
分子名称: CALCIUM ION, N-[(benzyloxy)carbonyl]-L-aspartic acid, Thermolysin, ...
著者Kunishima, N, Naitow, H, Matsuura, Y.
登録日2016-11-29
公開日2017-08-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5WUN
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BU of 5wun by Molmil
Crystal structure of mouse importin-alpha1 bound to non-phosphorylated NLS of EBNA1
分子名称: Epstein-Barr nuclear antigen 1, Importin subunit alpha-1
著者Nakada, R, Hirano, H, Matsuura, Y.
登録日2016-12-19
公開日2017-01-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the regulation of nuclear import of Epstein-Barr virus nuclear antigen 1 (EBNA1) by phosphorylation of the nuclear localization signal.
Biochem. Biophys. Res. Commun., 484, 2017
5WUM
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Crystal structure of mouse importin-alpha1 bound to S385-phosphorylated NLS of EBNA1
分子名称: Epstein-Barr nuclear antigen 1, Importin subunit alpha-1
著者Nakada, R, Hirano, H, Matsuura, Y.
登録日2016-12-19
公開日2017-01-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for the regulation of nuclear import of Epstein-Barr virus nuclear antigen 1 (EBNA1) by phosphorylation of the nuclear localization signal.
Biochem. Biophys. Res. Commun., 484, 2017
1X1N
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Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato
分子名称: 4-alpha-glucanotransferase, CALCIUM ION, GLYCEROL
著者Imamura, K, Matsuura, T, Takaha, T, Fujii, K, Nakagawa, A, Kusunoki, M, Nitta, Y.
登録日2005-04-08
公開日2006-04-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato
to be published
1WD7
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Crystal Structure of Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (Wild type, Native, Form-2 crystal)
分子名称: Uroporphyrinogen III Synthase
著者Mizohata, E, Matsuura, T, Sakai, H, Murayama, K, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-12
公開日2004-11-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (Wild type, Native, Form-2 crystal)
to be published
1WTM
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X-ray structure of HEW Lysozyme Orthorhombic Crystal formed in the Earth's magnetic field
分子名称: CHLORIDE ION, Lysozyme C
著者Saijo, S, Yamada, Y, Sato, T, Tanaka, N, Matsui, T, Sazaki, G, Nakajima, K, Matsuura, Y.
登録日2004-11-25
公開日2004-12-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Structural consequences of hen egg-white lysozyme orthorhombic crystal growth in a high magnetic field: validation of X-ray diffraction intensity, conformational energy searching and quantitative analysis of B factors and mosaicity.
Acta Crystallogr.,Sect.D, 61, 2005
1WCX
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Crystal Structure of Mutant Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (L75M/I193M/L248M, SeMet derivative, Form-1 crystal)
分子名称: GLYCEROL, Uroporphyrinogen III Synthase
著者Mizohata, E, Matsuura, T, Murayama, K, Sakai, H, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-06
公開日2005-05-06
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Uroporphyrinogen III Synthase from Thermus thermophilus HB8
To be Published
1WCW
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Crystal Structure of Uroporphyrinogen III Synthase from an Extremely Thermophilic Bacterium Thermus thermophilus HB8 (Wild type, Native, Form-1 crystal)
分子名称: GLYCEROL, Uroporphyrinogen III synthase
著者Mizohata, E, Matsuura, T, Sakai, H, Murayama, K, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-06
公開日2005-05-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal Structure of Uroporphyrinogen III Synthase from Thermus thermophilus HB8
To be Published
1VF7
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Crystal structure of the membrane fusion protein, MexA of the multidrug transporter
分子名称: Multidrug resistance protein mexA
著者Akama, H, Matsuura, T, Kashiwagi, S, Yoneyama, H, Tsukihara, T, Nakagawa, A, Nakae, T.
登録日2004-04-09
公開日2004-05-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the membrane fusion protein, MexA, of the multidrug transporter in Pseudomonas aeruginosa
J.Biol.Chem., 279, 2004
1J0J
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Crystal structure of neopullulanase E357Q complex with maltotetraose
分子名称: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, neopullulanase
著者Hondoh, H, Kuriki, T, Matsuura, Y.
登録日2002-11-14
公開日2003-01-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase
J.Mol.Biol., 326, 2003
1IPD
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THREE-DIMENSIONAL STRUCTURE OF A HIGHLY THERMOSTABLE ENZYME, 3-ISOPROPYLMALATE DEHYDROGENASE OF THERMUS THERMOPHILUS AT 2.2 ANGSTROMS RESOLUTION
分子名称: 3-ISOPROPYLMALATE DEHYDROGENASE, SULFATE ION
著者Imada, K, Sato, M, Tanaka, N, Katsube, Y, Matsuura, Y, Oshima, T.
登録日1992-01-29
公開日1993-10-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 A resolution.
J.Mol.Biol., 222, 1991

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