PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

---

8PMC	transcription factor BARHL2 bound to TAATT DNA sequence 分子名称: BarH-like 2 homeobox protein, DNA 著者 Morgunova, E, Popov, A, Yin, Y, Taipale, J. 登録日 2023-06-28 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 transcription factor BARHL2 bound to DNA sequences To Be Published
2I0Q	Crystal structure of a telomere single-strand DNA-protein complex from O. nova with full-length alpha and beta telomere proteins 分子名称: 1,2-ETHANEDIOL, 5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', CHLORIDE ION, ... 著者 Horvath, M.P, Buczek, P. 登録日 2006-08-11 公開日 2006-08-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Structural reorganization and the cooperative binding of single-stranded telomere DNA in Sterkiella nova. J.Biol.Chem., 281, 2006
1L1Z	MutM (Fpg) Covalent-DNA Intermediate 分子名称: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ... 著者 Fromme, J.C, Verdine, G.L. 登録日 2002-02-20 公開日 2002-06-14 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM. Nat.Struct.Biol., 9, 2002
1L2B	MutM (Fpg) DNA End-Product Structure 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*C*(AD2))-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3', ... 著者 Fromme, J.C, Verdine, G.L. 登録日 2002-02-20 公開日 2002-06-14 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM. Nat.Struct.Biol., 9, 2002
6BTC	SCCmec type IV LP1413 - nucleic acids binding protein 分子名称: LP1413 - SCCmec type IV-encoded DNA binding protein 著者 Rice, P.A, Mir-Sanchis, I. 登録日 2017-12-06 公開日 2018-07-25 最終更新日 2020-01-01 実験手法 X-RAY DIFFRACTION (2.1774075 Å) 主引用文献 Crystal Structure of an Unusual Single-Stranded DNA-Binding Protein Encoded by Staphylococcal Cassette Chromosome Elements. Structure, 26, 2018
2K9N	Solution NMR structure of the R2R3 DNA binding domain of Myb1 protein from protozoan parasite Trichomonas vaginalis 分子名称: MYB24 著者 Lou, Y, Wei, S, Rajasekaran, M, Chou, C, Hsu, H, Tai, J, Chen, C. 登録日 2008-10-19 公開日 2009-03-17 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 NMR structural analysis of DNA recognition by a novel Myb1 DNA-binding domain in the protozoan parasite Trichomonas vaginalis. Nucleic Acids Res., 37, 2009
4OI8	RAGE is a nucleic acid receptor that promotes inflammatory responses to DNA. 分子名称: 5'-D(*CP*CP*AP*TP*GP*AP*CP*TP*GP*TP*AP*GP*GP*AP*AP*AP*CP*TP*CP*TP*AP*GP*A)-3', 5'-D(*CP*TP*CP*TP*AP*GP*AP*GP*TP*TP*TP*CP*CP*TP*AP*CP*AP*GP*TP*CP*AP*TP*G)-3', Advanced glycosylation end product-specific receptor 著者 Jin, T, Jiang, J, Xiao, T. 登録日 2014-01-19 公開日 2014-04-30 実験手法 X-RAY DIFFRACTION (3.101 Å) 主引用文献 RAGE is a nucleic acid receptor that promotes inflammatory responses to DNA. J.Exp.Med., 210, 2013
1L2D	MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex 分子名称: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ... 著者 Fromme, J.C, Verdine, G.L. 登録日 2002-02-20 公開日 2002-06-14 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM. Nat.Struct.Biol., 9, 2002
1R8H	Comparison of the structure and DNA binding properties of the E2 proteins from an oncogenic and a non-oncogenic human papillomavirus 分子名称: PHOSPHATE ION, Regulatory protein E2 著者 Dell, G, Wilkinson, K.W, Tranter, R, Parish, J, Brady, R.L, Gaston, K. 登録日 2003-10-24 公開日 2003-12-23 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Comparison of the structure and DNA-binding properties of the E2 proteins from an oncogenic and a non-oncogenic human papillomavirus. J.Mol.Biol., 334, 2003
1KEA	STRUCTURE OF A THERMOSTABLE THYMINE-DNA GLYCOSYLASE 分子名称: ACETATE ION, CHLORIDE ION, IRON/SULFUR CLUSTER, ... 著者 Mol, C.D, Arvai, A.S, Begley, T.J, Cunningham, R.P, Tainer, J.A. 登録日 2001-11-14 公開日 2002-01-23 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and activity of a thermostable thymine-DNA glycosylase: evidence for base twisting to remove mismatched normal DNA bases. J.Mol.Biol., 315, 2002
4ZDS	Crystal Structure of core DNA binding domain of Arabidopsis Thaliana Transcription Factor Ethylene-Insensitive 3 分子名称: Protein ETHYLENE INSENSITIVE 3 著者 Song, J, Zhu, C, Zhang, X, Wen, X, Liu, L, Peng, J, Guo, H, Yi, C. 登録日 2015-04-18 公開日 2015-09-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Biochemical and Structural Insights into the Mechanism of DNA Recognition by Arabidopsis ETHYLENE INSENSITIVE3. Plos One, 10, 2015
4R48	Racemic crystal structure of a calcium-bound DNA four-way junction 分子名称: 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3', CALCIUM ION, SODIUM ION 著者 Mandal, P.K, Collie, G.W, Kauffmann, B, Huc, I. 登録日 2014-08-19 公開日 2014-11-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 Racemic DNA crystallography. Angew.Chem.Int.Ed.Engl., 53, 2014
1O9R	The X-ray crystal structure of Agrobacterium tumefaciens Dps, a member of the family that protect DNA without binding 分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, AGROBACTERIUM TUMEFACIENS DPS, ... 著者 Ilari, A, Ceci, P, Chiancone, E. 登録日 2002-12-18 公開日 2003-05-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 The Dps Protein of Agrobacterium Tumefaciens Does not Bind to DNA But Protects It Toward Oxidative Cleavage: X-Ray Crystal Structure, Iron Binding, and Hydroxyl-Radical Scavenging Properties J.Biol.Chem., 278, 2003
1G38	ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX 分子名称: 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3', 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3', 5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE, ... 著者 Goedecke, K, Pignot, M, Goody, R.S, Scheidig, A.J, Weinhold, E. 登録日 2000-10-23 公開日 2001-03-05 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the N6-adenine DNA methyltransferase M.TaqI in complex with DNA and a cofactor analog. Nat.Struct.Biol., 8, 2001
1C2Q	SOLUTION STRUCTURE OF A DNA.RNA HYBRID CONTAINING AN ALPHAT-ANOMERIC THYMIDINE AND POLARITY REVERSALS 分子名称: 5'-D(ATGG-3'-3'-(T3P)-5'-5'-GCTC)-3', 5'-R(GAGCACCAU)-3' 著者 Germann, M.W, Aramini, J.M. 登録日 1999-07-26 公開日 1999-11-29 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a DNA.RNA hybrid containing an alpha-anomeric thymidine and polarity reversals: d(ATGG-3'-3'-alphaT-5'-5'-GCTC). r(gagcaccau). Biochemistry, 38, 1999
7DQ8	Crystal structure of actinomycin D-echinomycin-d(ACGCGCT/AGCTCGT) complex 分子名称: 2-CARBOXYQUINOXALINE, Actinomycin D, DNA (5'-D(P*AP*CP*GP*CP*GP*CP*T)-3'), ... 著者 Satange, R.B, Hou, M.H. 登録日 2020-12-22 公開日 2021-12-29 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Synergistic binding of actinomycin D and echinomycin to DNA mismatch sites and their combined anti-tumour effects. Nucleic Acids Res., 2023
3V6P	Crystal structure of the DNA-binding domain of dHax3, a TAL effector 分子名称: dHax3 著者 Deng, D, Yan, C.Y, Pan, X.J, Wang, J.W, Shi, Y.G, Yan, N. 登録日 2011-12-20 公開日 2012-01-18 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.401 Å) 主引用文献 Structural Basis for Sequence-Specific Recognition of DNA by TAL Effectors Science, 2012
5BNH	Crystal structure of the HLTF HIRAN domain with a ssDNA fragment 分子名称: ACETATE ION, DNA (5'-D(*(GD)P*GP*TP*G)-3'), DNA (5'-D(*(TD)P*TP*G)-3'), ... 著者 Neculai, D, Walker, J.R, Weigelt, J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Dhe-Paganon, S. 登録日 2015-05-26 公開日 2016-05-25 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Co-crystal structure of the HLTF HIRAN domain with a ssDNA fragment To Be Published
4NM6	Crystal structure of TET2-DNA complex 分子名称: 5'-D(*AP*CP*CP*AP*CP*(5CM)P*GP*GP*TP*GP*GP*T)-3', FE (II) ION, Methylcytosine dioxygenase TET2, ... 著者 Hu, L, Li, Z, Cheng, J, Rao, Q, Gong, W, Liu, M, Wang, P, Xu, Y. 登録日 2013-11-14 公開日 2013-12-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.026 Å) 主引用文献 Crystal Structure of TET2-DNA Complex: Insight into TET-Mediated 5mC Oxidation. Cell(Cambridge,Mass.), 155, 2013
2FR4	Structure of Fab DNA-1 complexed with a stem-loop DNA ligand 分子名称: 5'-D(*CP*TP*GP*CP*CP*TP*TP*CP*AP*G)-3', TETRAETHYLENE GLYCOL, antibody heavy chain FAB, ... 著者 Tanner, J.J, Ou, Z. 登録日 2006-01-18 公開日 2007-01-09 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Impact of DNA hairpin folding energetics on antibody-ssDNA association. J.Mol.Biol., 374, 2007
8TWB	Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA-DNA complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, Chromosome transmission fidelity protein 18, MAGNESIUM ION, ... 著者 Yuan, Z, Georgescu, R, O'Donnell, M, Li, H. 登録日 2023-08-20 公開日 2024-09-04 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM reveals that Ctf18-RFC collaborates with PolE to load the PCNA clamp onto a leading strand DNA To Be Published
6B0O	Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet TGT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.552 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
6B0P	Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet GGT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(P*AP*CP*CP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*TP*GP*GP*GP*AP*GP*GP*GP*T)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.077 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
2DP6	Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNA 分子名称: 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*CP*GP*CP*AP*AP*CP*A)-3', DIHYDROGENPHOSPHATE ION, ... 著者 Kosaka, H, Nakagawa, N, Masui, R, Kuramitsu, S, Hoseki, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-05-07 公開日 2007-05-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of Family 5 Uracil-DNA Glycosylase Bound to DNA Reveals Insights into the Mechanism for Substrate Recognition and Catalysis To be Published
6B0R	Zinc finger Domain of WT1(-KTS form) with M342R Mutation and 14+1mer Oligonucleotide with 3' Triplet TGG 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*GP*GP*TP*TP*A)-3'), DNA (5'-D(P*TP*AP*AP*CP*CP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.818 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018

<291292293294295296297298299300301302303304305306>