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8RJC
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BU of 8rjc by Molmil
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
著者Lewis, A.J.O, Hegde, R.S.
登録日2023-12-20
公開日2024-01-24
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (2.90061 Å)
主引用文献Structural analysis of the dynamic ribosome-translocon complex.
Elife, 13, 2024
8RJB
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BU of 8rjb by Molmil
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
著者Lewis, A.J.O, Hegde, R.S.
登録日2023-12-20
公開日2024-01-24
最終更新日2024-08-07
実験手法ELECTRON MICROSCOPY (2.69243 Å)
主引用文献Structural analysis of the dynamic ribosome-translocon complex.
Elife, 13, 2024
8RCT
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BU of 8rct by Molmil
Escherichia coli paused disome complex (Rotated disome interface class 2)
分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
著者Fluegel, T, Schacherl, M.
登録日2023-12-07
公開日2024-03-06
最終更新日2025-03-12
実験手法ELECTRON MICROSCOPY (5.32 Å)
主引用文献Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
8RCM
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BU of 8rcm by Molmil
Escherichia coli paused disome complex (Non-rotated disome interface class 2)
分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
著者Fluegel, T, Schacherl, M.
登録日2023-12-06
公開日2024-03-06
最終更新日2025-03-12
実験手法ELECTRON MICROSCOPY (3.59 Å)
主引用文献Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
8RCS
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BU of 8rcs by Molmil
Escherichia coli paused disome complex (Rotated disome interface class 1)
分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
著者Fluegel, T, Schacherl, M.
登録日2023-12-07
公開日2024-03-06
最終更新日2025-03-12
実験手法ELECTRON MICROSCOPY (4.46 Å)
主引用文献Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
8RGR
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BU of 8rgr by Molmil
Closed Complex I from murine liver
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ...
著者Vercellino, I, Sazanov, L.A.
登録日2023-12-14
公開日2024-04-24
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献SCAF1 drives the compositional diversity of mammalian respirasomes.
Nat.Struct.Mol.Biol., 31, 2024
8RCL
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BU of 8rcl by Molmil
Escherichia coli paused disome complex (Non-rotated disome interface class 1)
分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
著者Fluegel, T, Schacherl, M.
登録日2023-12-06
公開日2024-03-13
最終更新日2025-03-12
実験手法ELECTRON MICROSCOPY (3.49 Å)
主引用文献Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
8RXH
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CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
分子名称: (2S)-2-[2-[4-[[(2R,3S,4S)-3-acetyloxy-4-oxidanyl-pyrrolidin-2-yl]methyl]phenoxy]ethanoylamino]-6-azanyl-hexanoic acid, 40S ribosomal protein S12, 40S ribosomal protein S14, ...
著者Rajan, K.S, Yonath, A.
登録日2024-02-07
公開日2024-05-15
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献Structural and mechanistic insights into the function of Leishmania ribosome lacking a single pseudouridine modification.
Cell Rep, 43, 2024
8RXX
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CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAIN
分子名称: 40S ribosomal protein S12, 40S ribosomal protein S14, 40S ribosomal protein S19-like protein, ...
著者Rajan, K.S, Yonath, A.
登録日2024-02-08
公開日2024-05-15
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Structural and mechanistic insights into the function of Leishmania ribosome lacking a single pseudouridine modification.
Cell Rep, 43, 2024
1M5Q
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BU of 1m5q by Molmil
Crystal structure of a novel Sm-like archaeal protein from Pyrobaculum aerophilum
分子名称: ACETIC ACID, CADMIUM ION, GLYCEROL, ...
著者Mura, C, Phillips, M, Kozhukhovsky, A, Eisenberg, D.
登録日2002-07-09
公開日2003-03-18
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and assembly of an augmented Sm-like archaeal protein 14-mer
Proc.Natl.Acad.Sci.USA, 100, 2003
8S1P
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BU of 8s1p by Molmil
YlmH bound to PtRNA-50S
分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
著者Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N.
登録日2024-02-15
公開日2024-06-12
最終更新日2025-03-12
実験手法ELECTRON MICROSCOPY (1.96 Å)
主引用文献A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis.
Nucleic Acids Res., 52, 2024
8S6H
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BU of 8s6h by Molmil
Cryo-EM Structure of the R388 plasmid conjugative pilus reveals a helical polymer characterised by an unusual pilin/phospholipid binary complex
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, TrwL protein
著者Vadakkepat, A.K, Waksman, G, Redzej, A.
登録日2024-02-27
公開日2024-07-24
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Cryo-EM structure of the R388 plasmid conjugative pilus reveals a helical polymer characterized by an unusual pilin/phospholipid binary complex.
Structure, 32, 2024
8S3B
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BU of 8s3b by Molmil
Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 3-(1H-Tetrazol-5-yl)benzoic acid and NAD
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-(1~{H}-1,2,3,4-tetrazol-5-yl)benzoic acid, ...
著者Grzechowiak, M, Ruszkowski, M.
登録日2024-02-19
公開日2024-09-04
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies.
Int.J.Biol.Macromol., 278, 2024
1M90
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BU of 1m90 by Molmil
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
分子名称: 23S RRNA, 5S RRNA, 6-AMINOHEXANOIC ACID, ...
著者Hansen, J.L, Schmeing, T.M, Moore, P.B, Steitz, T.A.
登録日2002-07-26
公開日2002-09-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural insights into peptide bond formation.
Proc.Natl.Acad.Sci.USA, 99, 2002
2OTL
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BU of 2otl by Molmil
Girodazole bound to the large subunit of Haloarcula marismortui
分子名称: 23S ribosomal RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ...
著者Blaha, G, Schroeder, S.J, Tirado-Rives, J.
登録日2007-02-08
公開日2007-04-03
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
J.Mol.Biol., 367, 2007
1N8R
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BU of 1n8r by Molmil
Structure of large ribosomal subunit in complex with virginiamycin M
分子名称: 23S ribosomal RNA, 50S ribosomal protein L10e, 50S ribosomal protein L13P, ...
著者Hansen, J.L, Moore, P.B, Steitz, T.A.
登録日2002-11-21
公開日2003-07-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit
J.Mol.Biol., 330, 2003
1NJI
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BU of 1nji by Molmil
Structure of chloramphenicol bound to the 50S ribosomal subunit
分子名称: 23S ribosomal RNA, 50S ribosomal protein L10e, 50S ribosomal protein L13P, ...
著者Hansen, J.L, Moore, P.B, Steitz, T.A.
登録日2002-12-31
公開日2003-07-22
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit
J.Mol.Biol., 330, 2003
2QEX
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BU of 2qex by Molmil
Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
分子名称: 23S ribosomal RNA, 50S ribosomal protein L10e, 50S ribosomal protein L11P, ...
著者Schroeder, S.J, Blaha, G.
登録日2007-06-26
公開日2008-09-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit.
Antimicrob.Agents Chemother., 51, 2007
2QA4
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BU of 2qa4 by Molmil
A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
分子名称: 23S RIBOSOMAL RNA, 50S RIBOSOMAL PROTEIN L31E, 50S ribosomal protein L10e, ...
著者Steitz, T.A, Kavran, J.M.
登録日2007-06-14
公開日2008-04-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of the base of the L7/L12 stalk of the Haloarcula marismortui large ribosomal subunit: Analysis of L11 movements
J.Mol.Biol., 371, 2007
1M6V
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BU of 1m6v by Molmil
Crystal Structure of the G359F (small subunit) Point Mutant of Carbamoyl Phosphate Synthetase
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, L-ornithine, ...
著者Thoden, J.B, Huang, X, Raushel, F.M, Holden, H.M.
登録日2002-07-17
公開日2002-07-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Carbamoyl-phosphate synthetase. Creation of an escape route for ammonia
J.Biol.Chem., 277, 2002
1M1K
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BU of 1m1k by Molmil
Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui
分子名称: 23S RRNA, 5S RRNA, AZITHROMYCIN, ...
著者Hansen, J.L, Ippolito, J.A, Ban, N, Nissen, P, Moore, P.B, Steitz, T.A.
登録日2002-06-19
公開日2002-07-19
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献The structures of four macrolide antibiotics bound to the large ribosomal subunit.
Mol.Cell, 10, 2002
2ON5
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BU of 2on5 by Molmil
Structure of NaGST-2
分子名称: 1,2-ETHANEDIOL, GLUTATHIONE, Na Glutathione S-transferase 2
著者Asojo, O.A, Ngamelue, M, Homma, H, Goud, G, Zhan, B, Hotez, P.J.
登録日2007-01-23
公開日2007-08-07
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献X-ray structures of Na-GST-1 and Na-GST-2 two glutathione s-transferase from the human hookworm Necator americanus
Bmc Struct.Biol., 7, 2007
2OM0
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BU of 2om0 by Molmil
Structure of human insulin in presence of urea at pH 6.5
分子名称: CHLORIDE ION, Insulin A chain, Insulin B chain, ...
著者Norrman, M, Schluckebier, G.
登録日2007-01-20
公開日2007-12-04
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystallographic characterization of two novel crystal forms of human insulin induced by chaotropic agents and a shift in pH.
Bmc Struct.Biol., 7, 2007
2OTJ
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BU of 2otj by Molmil
13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
分子名称: 13-DEOXYTEDANOLIDE, 23S ribosomal RNA, 50S ribosomal protein L10E, ...
著者Blaha, G, Schroeder, S.J, Tirado-Rives, J.
登録日2007-02-08
公開日2007-04-03
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
J.Mol.Biol., 367, 2007
1N32
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BU of 1n32 by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V.
登録日2002-10-25
公開日2002-11-29
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
Cell(Cambridge,Mass.), 111, 2002

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