PDB: 42545 件ウェブページステータス検索Chemie searchBIRD

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8Q7N	cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region) 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, MINX pre-mRNA, Microfibrillar-associated protein 1, ... 著者 Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Urlaub, H, Stark, H, Luehrmann, R. 登録日 2023-08-16 公開日 2024-01-24 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Cryo-EM analyses of dimerized spliceosomes provide new insights into the functions of B complex proteins. Embo J., 43, 2024
8HE5	RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome 分子名称: DNA (198-MER), DNA repair protein, DNA-directed RNA polymerase subunit, ... 著者 Osumi, K, Kujirai, T, Ehara, H, Kinoshita, C, Saotome, M, Kagawa, W, Sekine, S, Takizawa, Y, Kurumizaka, H. 登録日 2022-11-07 公開日 2023-07-05 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (6.95 Å) 主引用文献 Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome. J.Mol.Biol., 435, 2023
1QE5	PURINE NUCLEOSIDE PHOSPHORYLASE FROM CELLULOMONAS SP. IN COMPLEX WITH PHOSPHATE 分子名称: CALCIUM ION, PENTOSYLTRANSFERASE, PHOSPHATE ION 著者 Tebbe, J, Bzowska, A, Wielgus-Kutrowska, B, Schroeder, W, Kazimierczuk, Z, Shugar, D, Saenger, W, Koellner, G. 登録日 1999-07-13 公開日 1999-12-12 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the purine nucleoside phosphorylase (PNP) from Cellulomonas sp. and its implication for the mechanism of trimeric PNPs. J.Mol.Biol., 294, 1999
8G57	Structure of nucleosome-bound Sirtuin 6 deacetylase 分子名称: DNA strand 1, DNA strand 2, Histone H2A type 1-B/E, ... 著者 Chio, U.S, Rechiche, O, Bryll, A.R, Zhu, J, Feldman, J.L, Peterson, C.L, Tan, S, Armache, J.-P. 登録日 2023-02-11 公開日 2023-04-26 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Cryo-EM structure of the human Sirtuin 6-nucleosome complex. Sci Adv, 9, 2023
3FOW	Plasmodium Purine Nucleoside Phosphorylase V66I-V73I-Y160F Mutant 分子名称: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, PHOSPHATE ION, Uridine phosphorylase, ... 著者 Donaldson, T, Zhan, C. 登録日 2009-01-02 公開日 2009-12-29 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural determinants of the 5'-methylthioinosine specificity of Plasmodium purine nucleoside phosphorylase. Plos One, 9, 2014
6TDA	Structure of SWI/SNF chromatin remodeler RSC bound to a nucleosome 分子名称: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC58, ... 著者 Wagner, F.R, Dienemann, C, Wang, H, Stuetzer, A, Tegunov, D, Urlaub, H, Cramer, P. 登録日 2019-11-08 公開日 2020-03-18 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (15 Å) 主引用文献 Structure of SWI/SNF chromatin remodeller RSC bound to a nucleosome. Nature, 579, 2020
1NW4	Crystal Structure of Plasmodium falciparum Purine Nucleoside Phosphorylase in complex with ImmH and Sulfate 分子名称: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, ISOPROPYL ALCOHOL, SULFATE ION, ... 著者 Shi, W, Ting, L.M, Kicska, G.A, Lewandowicz, A, Tyler, P.C, Evans, G.B, Furneaux, R.H, Kim, K, Almo, S.C, Schramm, V.L. 登録日 2003-02-05 公開日 2004-03-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Plasmodium falciparum Purine Nucleoside Phosphorylase: CRYSTAL STRUCTURES, IMMUCILLIN INHIBITORS, AND DUAL CATALYTIC FUNCTION. J.Biol.Chem., 279, 2004
4UC0	Crystal Structure Of a purine nucleoside phosphorylase (PSI-NYSGRC-029736) from Agrobacterium vitis 分子名称: HYPOXANTHINE, Purine nucleoside phosphorylase 著者 Cameron, S.A, Sampathkumar, P, Ramagopal, U.A, Attonito, J, Ahmed, M, Bhosle, R, Bonanno, J, Chamala, S, Chowdhury, S, Glenn, A.S, Hammonds, J, Hillerich, B, Love, J.D, Seidel, R, Stead, M, Toro, R, Wasserman, S.R, Schramm, V.L, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC) 登録日 2014-08-13 公開日 2014-10-08 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal Structure Of a purine nucleoside phosphorylase (PSI-NYSGRC-029736) from Agrobacterium vitis To be published
5B32	The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.3. 分子名称: CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... 著者 Horikoshi, N, Taguchi, H, Arimura, Y, Kurumizaka, H. 登録日 2016-02-08 公開日 2016-08-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A. Open Biology, 6, 2016
5B33	The crystal structure of the H2AZ nucleosome with H3.3. 分子名称: DNA (146-MER), Histone H2A.Z, Histone H2B type 1-J, ... 著者 Horikoshi, N, Taguchi, H, Arimura, Y, Kurumizaka, H. 登録日 2016-02-08 公開日 2016-08-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.925 Å) 主引用文献 Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A. Open Biology, 6, 2016
4BRA	Legionella pneumophila NTPDase1 crystal form II, closed, Mg AMPPNP complex 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, GLYCEROL, ... 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
4BRF	Legionella pneumophila NTPDase1 crystal form II (closed) in complex with a distorted orthomolybdate ion and AMP 分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, ... 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
4BRK	Legionella pneumophila NTPDase1 N302Y variant crystal form III (closed) in complex with MG UMPPNP 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]uridine, CHLORIDE ION, ... 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
4BRL	Legionella pneumophila NTPDase1 crystal form III (closed) in complex with transition state mimic guanosine 5'-phosphovanadate 分子名称: CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, GUANOSINE-5'-PHOSPHOVANADATE, ... 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
4BRD	Legionella pneumophila NTPDase1 Q193E crystal form II, closed, Mg AMPPNP complex 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, ... 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
4BRM	Sulfur SAD phasing of the Legionella pneumophila NTPDase1 - crystal form III (closed) in complex with sulfate 分子名称: CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, SULFATE ION 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
4BRG	Legionella pneumophila NTPDase1 crystal form II (closed) in complex with MG GMPPNP 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, ... 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
3D1V	Crystal structure of human PNP complexed with 2-mercapto(3H) quinazolinone 分子名称: 2-mercapto(3H)quinazolinone, Purine nucleoside phosphorylase, SULFATE ION 著者 De Azevedo Jr, W.F, Basso, L.A, Santos, D.S. 登録日 2008-05-06 公開日 2009-07-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural studies of human purine nucleoside phosphorylase: towards a new specific empirical scoring function Arch.Biochem.Biophys., 479, 2008
5B31	The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.1. 分子名称: CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... 著者 Horikoshi, N, Taguchi, H, Arimura, Y, Kurumizaka, H. 登録日 2016-02-08 公開日 2016-08-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A. Open Biology, 6, 2016
7PET	The 4x177 nucleosome array containing H1 分子名称: DNA (702-MER), Histone H1.4, Histone H2A type 1-B/E, ... 著者 Dombrowski, M, Cramer, P. 登録日 2021-08-11 公開日 2022-08-03 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (9.5 Å) 主引用文献 Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory. Nat.Struct.Mol.Biol., 29, 2022
5AV6	human nucleosome core particle 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. 登録日 2015-06-12 公開日 2015-12-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
5AVC	human nucleosome core particle 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. 登録日 2015-06-12 公開日 2015-12-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
5AVB	human nucleosome core particle 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. 登録日 2015-06-12 公開日 2015-12-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
4QG2	Crystal structure of the tetrameric GTP/dATP/ATP-bound SAMHD1 (RN206) mutant catalytic core 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J. 登録日 2014-05-22 公開日 2014-10-15 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates. J.Biol.Chem., 289, 2014
4QG4	Crystal structure of the tetrameric GTP/dATP/ATP-bound SAMHD1 (H210A) mutant catalytic core 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J. 登録日 2014-05-22 公開日 2014-10-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates. J.Biol.Chem., 289, 2014

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