Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6EJ9
DownloadVisualize
BU of 6ej9 by Molmil
Human Xylosyltransferase 1 in complex with peptide QEPEGSGGGQGG
分子名称: PHOSPHATE ION, Protein AMBP, SODIUM ION, ...
著者Briggs, D.C, Hohenester, E.
登録日2017-09-20
公開日2018-05-02
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1.
Structure, 26, 2018
6EJA
DownloadVisualize
BU of 6eja by Molmil
Human Xylosyltransferase 1 in complex with peptide QEEEYSGGGQGG
分子名称: Protein AMBP, SODIUM ION, Xylosyltransferase 1
著者Briggs, D.C, Hohenester, E.
登録日2017-09-20
公開日2018-05-02
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1.
Structure, 26, 2018
6ENF
DownloadVisualize
BU of 6enf by Molmil
Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Huter, P, Arenz, S, Wilson, D.N.
登録日2017-10-04
公開日2017-11-22
最終更新日2018-01-31
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P.
Mol. Cell, 68, 2017
3LLP
DownloadVisualize
BU of 3llp by Molmil
1.8 Angstrom human fascin 1 crystal structure
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BROMIDE ION, Fascin, ...
著者Chen, L, Yang, S, Jakoncic, J, Zhang, J.J, Huang, X.-Y.
登録日2010-01-29
公開日2010-04-07
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Migrastatin analogues target fascin to block tumour metastasis.
Nature, 464, 2010
3JBX
DownloadVisualize
BU of 3jbx by Molmil
Cryo-electron microscopy structure of RAG Signal End Complex (C2 symmetry)
分子名称: 5'-D(*CP*AP*CP*AP*GP*TP*GP*CP*TP*AP*CP*AP*GP*AP*C)-3', 5'-D(*GP*CP*GP*AP*TP*GP*GP*TP*TP*AP*AP*CP*CP*A)-3', 5'-D(P*GP*TP*CP*TP*GP*TP*AP*GP*CP*AP*CP*TP*GP*TP*G)-3', ...
著者Ru, H, Chambers, M.G, Fu, T.-M, Tong, A.B, Liao, M, Wu, H.
登録日2015-10-22
公開日2015-12-09
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures.
Cell(Cambridge,Mass.), 163, 2015
3JBW
DownloadVisualize
BU of 3jbw by Molmil
Cryo-electron microscopy structure of RAG Paired Complex (with NBD, no symmetry)
分子名称: 12-RSS signal end forward strand, 5'-D(P*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*GP*TP*CP*TP*TP*A)-3', Nicked 12-RSS intermediate reverse strand, ...
著者Ru, H, Chambers, M.G, Fu, T.-M, Tong, A.B, Liao, M, Wu, H.
登録日2015-10-21
公開日2015-12-09
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures.
Cell(Cambridge,Mass.), 163, 2015
7EMY
DownloadVisualize
BU of 7emy by Molmil
Pyochelin synthetase, a dimeric nonribosomal peptide synthetase elongation module
分子名称: 2-HYDROXYBENZOIC ACID, 4'-PHOSPHOPANTETHEINE, ADENOSINE MONOPHOSPHATE, ...
著者Wang, J.L, Wang, Z.J.
登録日2021-04-15
公開日2021-12-22
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Catalytic trajectory of a dimeric nonribosomal peptide synthetase subunit with an inserted epimerase domain.
Nat Commun, 13, 2022
7EN1
DownloadVisualize
BU of 7en1 by Molmil
Pyochelin synthetase, a dimeric nonribosomal peptide synthetase elongation module-after-condensation
分子名称: (4S)-2-(2-hydroxyphenyl)-4,5-dihydro-1,3-thiazole-4-carboxylic acid, 2-HYDROXYBENZOIC ACID, 4'-PHOSPHOPANTETHEINE, ...
著者Wang, J.L, Wang, Z.J.
登録日2021-04-15
公開日2021-12-22
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.47 Å)
主引用文献Catalytic trajectory of a dimeric nonribosomal peptide synthetase subunit with an inserted epimerase domain.
Nat Commun, 13, 2022
7EN2
DownloadVisualize
BU of 7en2 by Molmil
Pyochelin synthetase, a dimeric nonribosomal peptide synthetase elongation module-after-condensation, condensation
分子名称: 4'-PHOSPHOPANTETHEINE, ADENOSINE MONOPHOSPHATE, Dihydroaeruginoic acid synthetase
著者Wang, J.L, Wang, Z.J.
登録日2021-04-15
公開日2021-12-22
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.78 Å)
主引用文献Catalytic trajectory of a dimeric nonribosomal peptide synthetase subunit with an inserted epimerase domain.
Nat Commun, 13, 2022
3KUC
DownloadVisualize
BU of 3kuc by Molmil
Complex of Rap1A(E30D/K31E)GDP with RafRBD(A85K/N71R)
分子名称: CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Filchtinski, D, Sharabi, O, Rueppel, A, Vetter, I.R, Herrmann, C, Shifman, J.M.
登録日2009-11-27
公開日2010-03-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf.
J.Mol.Biol., 399, 2010
4HDQ
DownloadVisualize
BU of 4hdq by Molmil
Crystal Structure of the Ternary Complex of KRIT1 bound to both the Rap1 GTPase and the Heart of Glass (HEG1) cytoplasmic tail
分子名称: GLYCEROL, Krev interaction trapped protein 1, MAGNESIUM ION, ...
著者Gingras, A.R.
登録日2012-10-02
公開日2013-07-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The Structure of the Ternary Complex of Krev Interaction Trapped 1 (KRIT1) Bound to Both the Rap1 GTPase and the Heart of Glass (HEG1) Cytoplasmic Tail.
J.Biol.Chem., 288, 2013
4HDO
DownloadVisualize
BU of 4hdo by Molmil
Crystal structure of the binary Complex of KRIT1 bound to the Rap1 GTPase
分子名称: GLYCEROL, Krev interaction trapped protein 1, MAGNESIUM ION, ...
著者Gingras, A.R.
登録日2012-10-02
公開日2013-07-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献The Structure of the Ternary Complex of Krev Interaction Trapped 1 (KRIT1) Bound to Both the Rap1 GTPase and the Heart of Glass (HEG1) Cytoplasmic Tail.
J.Biol.Chem., 288, 2013
3ND3
DownloadVisualize
BU of 3nd3 by Molmil
Uhelix 16-mer dsRNA
分子名称: 5'-R(*AP*GP*AP*GP*AP*AP*GP*AP*UP*UP*UP*UP*UP*UP*UP*U)-3', POTASSIUM ION, SODIUM ION
著者Mooers, B.H, Singh, A.
登録日2010-06-07
公開日2011-09-21
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献The crystal structure of an oligo(U):pre-mRNA duplex from a trypanosome RNA editing substrate.
Rna, 17, 2011
3ND4
DownloadVisualize
BU of 3nd4 by Molmil
Watson-Crick 16-mer dsRNA
分子名称: 5'-R(*AP*GP*AP*GP*AP*AP*GP*AP*UP*CP*UP*UP*CP*UP*CP*U)-3', MAGNESIUM ION, POTASSIUM ION, ...
著者Mooers, B.H, Singh, A.
登録日2010-06-07
公開日2011-09-21
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.524 Å)
主引用文献The crystal structure of an oligo(U):pre-mRNA duplex from a trypanosome RNA editing substrate.
Rna, 17, 2011
3J82
DownloadVisualize
BU of 3j82 by Molmil
Electron cryo-microscopy of DNGR-1 in complex with F-actin
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ...
著者Hanc, P, Fujii, T, Yamada, Y, Huotari, J, Schulz, O, Ahrens, S, Kjaer, S, Way, M, Namba, K, Reis e Sousa, C.
登録日2014-09-25
公開日2015-05-20
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (7.7 Å)
主引用文献Structure of the Complex of F-Actin and DNGR-1, a C-Type Lectin Receptor Involved in Dendritic Cell Cross-Presentation of Dead Cell-Associated Antigens.
Immunity, 42, 2015
4MCR
DownloadVisualize
BU of 4mcr by Molmil
A high resolution structure of human glutamate carboxypeptidase II (GCPII) in complex with folyltri-gamma-L-glutamic acid (pteroyltetra-gamma-L-glutamic acid)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Navratil, M, Barinka, C, Lubkowski, J.
登録日2013-08-21
公開日2014-06-18
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural and biochemical characterization of the folyl-poly-gamma-l-glutamate hydrolyzing activity of human glutamate carboxypeptidase II.
Febs J., 281, 2014
4V4Q
DownloadVisualize
BU of 4v4q by Molmil
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Schuwirth, B.S, Borovinskaya, M.A, Hau, C.W, Zhang, W, Vila-Sanjurjo, A, Holton, J.M, Cate, J.H.D.
登録日2005-08-30
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.46 Å)
主引用文献Structures of the bacterial ribosome at 3.5 A resolution.
Science, 310, 2005
4M99
DownloadVisualize
BU of 4m99 by Molmil
Acetyltransferase domain of PglB from Neisseria gonorrhoeae FA1090 in complex with acetyl coenzyme A
分子名称: ACETYL COENZYME *A, Pilin glycosylation protein, SODIUM ION
著者Morrison, M.J, Imperiali, B.
登録日2013-08-14
公開日2013-10-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Biochemical analysis and structure determination of bacterial acetyltransferases responsible for the biosynthesis of UDP-N,N'-diacetylbacillosamine.
J.Biol.Chem., 288, 2013
4V11
DownloadVisualize
BU of 4v11 by Molmil
Structure of Synaptotagmin-1 with SV2A peptide phosphorylated at Thr84
分子名称: CALCIUM ION, GLYCEROL, SYNAPTIC VESICLE GLYCOPROTEIN 2A, ...
著者Zhang, N, Gordon, S.L, Fritsch, M.J, Esoof, N, Campbell, D, Gourlay, R, Velupillai, S, Macartney, T, Peggie, M, vanAalten, D.M.F, Cousin, M.A, Alessi, D.R.
登録日2014-09-22
公開日2015-02-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Phosphorylation of Synaptic Vesicle Protein 2A at Thr84 by Casein Kinase 1 Family Kinases Controls the Specific Retrieval of Synaptotagmin-1.
J.Neurosci., 35, 2015
4V1I
DownloadVisualize
BU of 4v1i by Molmil
Structure of a novel carbohydrate binding module from glycoside hydrolase family 5 glucanase from Ruminococcus flavefaciens FD-1 at medium resolution
分子名称: CARBOHYDRATE BINDING MODULE
著者Venditto, I, Centeno, M.S.J, Ferreira, L.M.A, Fontes, C.M.G.A, Najmudin, S.
登録日2014-09-26
公開日2016-01-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Complexity of the Ruminococcus Flavefaciens Cellulosome Reflects an Expansion in Glycan Recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
4V3U
DownloadVisualize
BU of 4v3u by Molmil
Structure of human nNOS R354A G357D mutant heme domain in complex with N-2-(2-(1H-imidazol-1-yl)pyrimidin-4-yl)ethyl-3-(pyridin-3-yl) propan-1-amine
分子名称: 5,6,7,8-TETRAHYDROBIOPTERIN, GLYCEROL, N-{2-[2-(1H-imidazol-1-yl)pyrimidin-4-yl]ethyl}-3-(pyridin-3-yl)propan-1-amine, ...
著者Li, H, Poulos, T.L.
登録日2014-10-20
公開日2014-12-24
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Novel 2,4-Disubstituted Pyrimidines as Potent, Selective, and Cell-Permeable Inhibitors of Neuronal Nitric Oxide Synthase.
J.Med.Chem., 58, 2015
4MCJ
DownloadVisualize
BU of 4mcj by Molmil
Crystal structure of a putative nucleoside deoxyribosyltransferase (BDI_0649) from Parabacteroides distasonis ATCC 8503 at 2.40 A resolution
分子名称: CHLORIDE ION, Uncharacterized protein
著者Joint Center for Structural Genomics (JCSG)
登録日2013-08-21
公開日2013-09-04
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of a hypothetical protein (BDI_0649) from Parabacteroides distasonis ATCC 8503 at 2.40 A resolution
To be published
4V6B
DownloadVisualize
BU of 4v6b by Molmil
Crystal structure of human ferritin Phe167SerfsX26 mutant.
分子名称: CALCIUM ION, Ferritin
著者Hurley, T.D, Vidal, R.
登録日2009-06-19
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Unraveling of the E-helices and disruption of 4-fold pores are associated with iron mishandling in a mutant ferritin causing neurodegeneration
J.Biol.Chem., 285, 2010
4V6N
DownloadVisualize
BU of 4v6n by Molmil
Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J.
登録日2011-12-07
公開日2014-07-09
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (12.1 Å)
主引用文献Structural characterization of mRNA-tRNA translocation intermediates.
Proc.Natl.Acad.Sci.USA, 109, 2012
4V72
DownloadVisualize
BU of 4v72 by Molmil
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H.
登録日2013-10-14
公開日2014-07-09
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (13 Å)
主引用文献Energy barriers and driving forces in tRNA translocation through the ribosome.
Nat.Struct.Mol.Biol., 20, 2013

225681

件を2024-10-02に公開中

PDB statisticsPDBj update infoContact PDBjnumon