PDB: 66478 件ウェブページステータス検索Chemie searchBIRD

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5WNX	DNA polymerase beta substrate complex with incoming 6-TdGTP 分子名称: 2-amino-9-{2-deoxy-5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-1,9-dihydro-6H-purine-6-thione, CALCIUM ION, CHLORIDE ION, ... 著者 Schaich, M.A, Smith, M.R, Cloud, A.S, Holloran, S.M, Freudenthal, B.D. 登録日 2017-08-01 公開日 2017-09-13 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structures of a DNA Polymerase Inserting Therapeutic Nucleotide Analogues. Chem. Res. Toxicol., 30, 2017
5WTP	Crystal structure of the C-terminal domain of outer membrane protein A (OmpA) from Capnocytophaga gingivalis 分子名称: OmpA family protein, SULFATE ION 著者 Dai, S, Tan, K, Ye, S, Zhang, R. 登録日 2016-12-13 公開日 2017-12-13 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure of thrombospondin type 3 repeats in bacterial outer membrane protein A reveals its intra-repeat disulfide bond-dependent calcium-binding capability. Cell Calcium, 66, 2017
5W7W	Crystal Structure of FHA domain of human APLF 分子名称: Aprataxin and PNK-like factor, FORMIC ACID, SODIUM ION 著者 Pedersen, L.C, Kim, K, London, R.E. 登録日 2017-06-21 公開日 2018-05-02 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.348 Å) 主引用文献 Characterization of the APLF FHA-XRCC1 phosphopeptide interaction and its structural and functional implications. Nucleic Acids Res., 45, 2017
5WN2	APE1 exonuclease substrate complex with phosphoglycolate 分子名称: 1,2-ETHANEDIOL, 2-PHOSPHOGLYCOLIC ACID, CALCIUM ION, ... 著者 Freudenthal, B.D, Whitaker, A.M. 登録日 2017-07-31 公開日 2018-02-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.288 Å) 主引用文献 Molecular snapshots of APE1 proofreading mismatches and removing DNA damage. Nat Commun, 9, 2018
5WO0	DNA polymerase beta substrate complex with incoming 5-FodUTP 分子名称: 2'-deoxy-5-formyluridine 5'-(tetrahydrogen triphosphate), CALCIUM ION, CHLORIDE ION, ... 著者 Schaich, M.A, Smith, M.R, Cloud, A.S, Holloran, S.M, Freudenthal, B.D. 登録日 2017-08-01 公開日 2017-09-13 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structures of a DNA Polymerase Inserting Therapeutic Nucleotide Analogues. Chem. Res. Toxicol., 30, 2017
5WNZ	DNA polymerase beta substrate complex with incoming 5-FodCTP 分子名称: 2'-deoxy-5-formylcytidine 5'-(tetrahydrogen triphosphate), CALCIUM ION, CHLORIDE ION, ... 著者 Schaich, M.A, Smith, M.R, Cloud, A.S, Holloran, S.M, Freudenthal, B.D. 登録日 2017-08-01 公開日 2017-09-13 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structures of a DNA Polymerase Inserting Therapeutic Nucleotide Analogues. Chem. Res. Toxicol., 30, 2017
4OI1	Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NONAETHYLENE GLYCOL, ... 著者 Dikfidan, A, Loll, B, Zeymer, C, Clausen, T, Meinhart, A. 登録日 2014-01-18 公開日 2014-05-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell, 54, 2014
5WEY	Joint X-ray/neutron structure of Concanavalin A with alpha1-2 D-mannobiose 分子名称: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION, ... 著者 Kovalevsky, A, Gerlits, O.O, Woods, R.J. 登録日 2017-07-11 公開日 2017-09-13 最終更新日 2023-10-04 実験手法 NEUTRON DIFFRACTION (1.8 Å), X-RAY DIFFRACTION 主引用文献 Mannobiose Binding Induces Changes in Hydrogen Bonding and Protonation States of Acidic Residues in Concanavalin A As Revealed by Neutron Crystallography. Biochemistry, 56, 2017
5WP0	Crystal structure of NAD synthetase NadE from Vibrio fischeri 分子名称: NH(3)-dependent NAD(+) synthetase 著者 Stogios, P.J, Evdokimova, E, Grimshaw, S, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2017-08-03 公開日 2017-08-16 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of NAD synthetase NadE from Vibrio fischeri To Be Published
4OI2	C. Elegans Clp1 and ADP and Mg2+ (turnover state) 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NONAETHYLENE GLYCOL, ... 著者 Dikfidan, A, Loll, B, Zeymer, C, Clausen, T, Meinhart, A. 登録日 2014-01-18 公開日 2014-05-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell, 54, 2014
5WC9	Human Pit-1 and 4xCATT DNA complex 分子名称: DNA (5'-D(*CP*CP*AP*TP*TP*CP*AP*TP*TP*CP*AP*TP*TP*CP*AP*TP*TP*CP*GP*GP*A)-3'), DNA (5'-D(*CP*CP*GP*AP*AP*TP*GP*AP*AP*TP*GP*AP*AP*TP*GP*AP*AP*TP*GP*GP*T)-3'), Pituitary-specific positive transcription factor 1 著者 Agarwal, S, Cho, T.Y. 登録日 2017-06-29 公開日 2017-11-22 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Biochemical and structural characterization of a novel cooperative binding mode by Pit-1 with CATT repeats in the macrophage migration inhibitory factor promoter. Nucleic Acids Res., 46, 2018
8HB9	Crystal Structure of Human IDH1 R132H Mutant in Complex with NADPH and Compound IHMT-IDH1-053 分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Isocitrate dehydrogenase [NADP] cytoplasmic, ... 著者 Guo, G, Wang, B, Liu, J, Liu, Q. 登録日 2022-10-27 公開日 2023-05-24 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure-based discovery of IHMT-IDH1-053 as a potent irreversible IDH1 mutant selective inhibitor. Eur.J.Med.Chem., 256, 2023
8HIS	Crystal structure of DNA decamer containing GuNA[Me,tBu] 分子名称: CACODYLIC ACID, DNA (5'-D(*GP*CP*GP*TP*AP*(LR6)P*AP*CP*GP*C)-3') 著者 Aoyama, H, Obika, S, Yamaguchi, T. 登録日 2022-11-21 公開日 2023-08-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N'- methylguanidine-bridged nucleic acids. Nucleic Acids Res., 51, 2023
4Q4E	Crystal structure of E.coli aminopeptidase N in complex with actinonin 分子名称: ACTINONIN, Aminopeptidase N, GLYCEROL, ... 著者 Reddi, R, Ganji, R.J, Addlagatta, A. 登録日 2014-04-14 公開日 2015-04-15 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for the inhibition of M1 family aminopeptidases by the natural product actinonin: Crystal structure in complex with E. coli aminopeptidase N. Protein Sci., 24, 2015
8TCK	Apo crystal Structure of modified HIV reverse transcriptase p51 domain (FPC1) 分子名称: p51 subunit 著者 Pedersen, L.C, London, R.E. 登録日 2023-07-02 公開日 2024-07-17 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Apo crystal Structure of modified HIV reverse transcriptase p51 domain (FPC2) To Be Published
8TCJ	Apo crystal Structure of modified HIV reverse transcriptase p51 domain (FPC2) 分子名称: p51 subunit 著者 Pedersen, L.C, London, R.E. 登録日 2023-07-02 公開日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.848 Å) 主引用文献 Apo crystal Structure of modified HIV reverse transcriptase p51 domain (FPC2) To Be Published
4QAX	Crystal structure of post-catalytic binary complex of Phosphoglycerate mutase from Staphylococcus aureus 分子名称: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, 2-PHOSPHOGLYCERIC ACID, MANGANESE (II) ION 著者 Roychowdhury, A, Kundu, A, Bose, M, Gujar, A, Das, A.K. 登録日 2014-05-06 公開日 2015-05-06 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 STRUCTURAL AND FUNCCTIONAL ANALYSIS of PHOSPHOGLYCERATE MUTASE from STAPHYLOCOCCUS AUREUS To be Published
4QTQ	Structure of a Xanthomonas Type IV Secretion System related protein 分子名称: CALCIUM ION, XAC2610 protein 著者 Souza, D.P, Guzzo, C.R, Farah, C.S. 登録日 2014-07-08 公開日 2015-06-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Bacterial killing via a type IV secretion system. Nat Commun, 6, 2015
4OOB	Crystal structure of HtdX(Rv0241c) from Mycobacterium tuberculosis 分子名称: CHLORIDE ION, Uncharacterized protein HtdX 著者 Biswas, R, Dutta, D, Das, A.K. 登録日 2014-01-31 公開日 2015-02-04 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of HtdX(Rv0241c) from Mycobacterium tuberculosis To be Published
4OI0	bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NONAETHYLENE GLYCOL, ... 著者 Dikfidan, A, Loll, B, Zeymer, C, Clausen, T, Meinhart, A. 登録日 2014-01-18 公開日 2014-05-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell, 54, 2014
4ODX	4E10 germline encoded precursor no.7 in complex with epitope scaffold T117 分子名称: 4E10 epitope scaffold T117, GEP7 Fv heavy chain, GEP7 Fv light chain 著者 Finton, K.A.K. 登録日 2014-01-10 公開日 2014-10-08 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Ontogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10. Plos Pathog., 10, 2014
4QXG	Antigen binding fragment of an anti IFNAR1 antibody 分子名称: Fab, heavy chain, IgG1, ... 著者 Oganesyan, V.Y, Dall'Acqua, W.F. 登録日 2014-07-20 公開日 2015-02-25 最終更新日 2015-04-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Molecular basis for antagonistic activity of anifrolumab, an anti-interferon-alpha receptor 1 antibody. MAbs, 7, 2015
4QYF	CHK1 kinase domain in complex with aminopyrazine compound 13 分子名称: 4-[3-amino-6-(3-hydroxyphenyl)pyrazin-2-yl]benzoic acid, Serine/threonine-protein kinase Chk1 著者 Appleton, B, Wu, P. 登録日 2014-07-24 公開日 2014-12-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Discovery of the 1,7-diazacarbazole class of inhibitors of checkpoint kinase 1. Bioorg.Med.Chem.Lett., 24, 2014
4FNI	Crystal structure of IsdI-W66Y in complex with heme and cyanide 分子名称: CYANIDE ION, Heme-degrading monooxygenase isdI, MAGNESIUM ION, ... 著者 Ukpabi, G.N, Murphy, M.E.P. 登録日 2012-06-19 公開日 2012-08-22 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Inactivation of the heme degrading enzyme IsdI by an active site substitution that diminishes heme ruffling. J.Biol.Chem., 287, 2012
1CN4	ERYTHROPOIETIN COMPLEXED WITH EXTRACELLULAR DOMAINS OF ERYTHROPOIETIN RECEPTOR 分子名称: PROTEIN (ERYTHROPOIETIN RECEPTOR), PROTEIN (ERYTHROPOIETIN) 著者 Stroud, R.M, Reid, S.W. 登録日 1999-05-25 公開日 1999-08-11 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Efficiency of signalling through cytokine receptors depends critically on receptor orientation. Nature, 395, 1998

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