PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4C93	Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Pol alpha. 分子名称: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A, DNA POLYMERASE ALPHA-BINDING PROTEIN 著者 Simon, A.C, Pellegrini, L. 登録日 2013-10-02 公開日 2014-04-30 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.694 Å) 主引用文献 A Ctf4 Trimer Couples the Cmg Helicase to DNA Polymerase a in the Eukaryotic Replisome Nature, 510, 2014
1RXZ	C-terminal region of A. fulgidus FEN-1 complexed with A. fulgidus PCNA 分子名称: DNA polymerase sliding clamp, Flap structure-specific endonuclease 著者 Chapados, B.R, Hosfield, D.J, Han, S, Qiu, J, Yelent, B, Shen, B, Tainer, J.A. 登録日 2003-12-18 公開日 2004-01-27 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair Cell(Cambridge,Mass.), 116, 2004
8CRY	Crystal structure of alien DNA CTSZZPBSBSZPPBAG in an orthorhombic lattice 分子名称: DNA (5'-D(*CP*TP*(JSP)P*(1W5)P*(1W5)P*(1WA)P*(IGU)P*(JSP)P*(IGU)P*(JSP)P*(1W5)P*(1WA)P*(1WA)P*(IGU)P*AP*G)-3'), MAGNESIUM ION 著者 Georgiadis, M.M. 登録日 2022-05-12 公開日 2023-05-17 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Alien DNA visualized at high resolution in A- and B-forms To Be Published
1ZNA	CONFORMATION AND DYNAMICS IN A Z-DNA TETRAMER 分子名称: DNA (5'-D(*CP*GP*CP*G)-3') 著者 Drew, H.R, Dickerson, R.E. 登録日 1981-01-26 公開日 1981-03-18 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Conformation and dynamics in a Z-DNA tetramer. J.Mol.Biol., 152, 1981
202D	SOLUTION STRUCTURE OF THE MENOGARIL-DNA COMPLEX 分子名称: DNA (5'-D(*GP*AP*CP*AP*TP*GP*TP*C)-3'), MENOGARIL 著者 Chen, H, Patel, D.J. 登録日 1995-03-29 公開日 1995-06-03 最終更新日 2024-03-13 実験手法 SOLUTION NMR 主引用文献 Solution Structure of the Menogaril-DNA Complex J.Am.Chem.Soc., 117, 1995
4DWY	Interactions of Mn2+ with a non-self-complementary Z-type DNA duplex 分子名称: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3'), MANGANESE (II) ION 著者 Mandal, P.K, Venkadesh, S, Gautham, N. 登録日 2012-02-27 公開日 2012-11-28 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 Interactions of Mn(2+) with a non-self-complementary Z-type DNA duplex Acta Crystallogr.,Sect.F, 68, 2012
7XFV	Dimeric G-quadruplex DNA Formed in the Proximal Promoter of VEGFR-2 分子名称: DNA (5'-D(*AP*TP*GP*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*T)-3') 著者 Zhang, Y, Lan, W, Wang, C, Cao, C. 登録日 2022-04-02 公開日 2023-03-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Dimeric G-quadruplex DNA Structure in the Proximal Promoter of VEGFR-2 Reveals a New Drug Target to Inhibit Tumor Angiogenesis. Chin.J.Chem., 40, 2023
4DY8	Interactions of Mn2+ with a non-self-complementary Z-type DNA duplex 分子名称: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3'), DNA (5'-D(P*TP*G)-3'), ... 著者 Mandal, P.K, Venkadesh, S, Gautham, N. 登録日 2012-02-28 公開日 2012-11-28 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Interactions of Mn(2+) with a non-self-complementary Z-type DNA duplex Acta Crystallogr.,Sect.F, 68, 2012
8ASH	Crystal structure of d(CCGGGGTACCCCGG) with XRB 分子名称: 4-[(~{E})-(3,6-dimethyl-1,3-benzothiazol-2-yl)iminomethyl]-~{N},~{N}-dimethyl-aniline, DNA (5'-D(*CP*CP*GP*GP*GP*GP*TP*AP*CP*CP*CP*CP*GP*G)-3') 著者 Sbirkova-Dimitrova, H.I, Shivachev, B.L, Rusev, R, Kuvandjiev, N, Heroux, A, Doukov, T. 登録日 2022-08-19 公開日 2023-01-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.837 Å) 主引用文献 Structural Characterization of Alzheimer DNA Promoter Sequences from the Amyloid Precursor Gene in the Presence of Thioflavin T and Analogs Crystals, 12, 2022
1RWZ	Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) from A. fulgidus 分子名称: DNA polymerase sliding clamp 著者 Chapados, B.R, Hosfield, D.J, Han, S, Qiu, J, Yelent, B, Shen, B, Tainer, J.A. 登録日 2003-12-17 公開日 2004-01-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair Cell(Cambridge,Mass.), 116, 2004
1RXM	C-terminal region of FEN-1 bound to A. fulgidus PCNA 分子名称: DNA polymerase sliding clamp, consensus FEN-1 peptide 著者 Chapados, B.R, Hosfield, D.J, Han, S, Qiu, J, Yelent, B, Shen, B, Tainer, J.A. 登録日 2003-12-18 公開日 2004-01-27 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair Cell(Cambridge,Mass.), 116, 2004
4C95	Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Sld5 分子名称: DNA POLYMERASE ALPHA-BINDING PROTEIN, DNA REPLICATION COMPLEX GINS PROTEIN SLD5 著者 Simon, A.C, Pellegrini, L. 登録日 2013-10-02 公開日 2014-04-30 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.694 Å) 主引用文献 A Ctf4 Trimer Couples the Cmg Helicase to DNA Polymerase a in the Eukaryotic Replisome Nature, 510, 2014
3IKL	Crystal structure of Pol gB delta-I4. 分子名称: DNA polymerase subunit gamma-2, mitochondrial 著者 Lee, Y.S, Kennedy, W.D, Yin, Y.W. 登録日 2009-08-06 公開日 2010-08-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural insight into processive human mitochondrial DNA synthesis and disease-related polymerase mutations. Cell(Cambridge,Mass.), 139, 2009
5CH0	Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine 分子名称: DNA (5'-R(*G)-D(P*(UMS))-R(P*G)-D(P*T)-R(P*A)-D(P*(5HC))-R(P*AP*C)-3') 著者 Sheng, J. 登録日 2015-07-10 公開日 2016-07-20 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine To Be Published
5CJY	Crystal structure of a B-form DNA duplex containing 5-hydroxylmethylcytidine 分子名称: DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Sheng, J. 登録日 2015-07-15 公開日 2016-07-20 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal structure of a B-form DNA duplex containing 5-hydroxylmethylcytidine To Be Published
4E1U	[Ru(bpy)2 dppz]2+ bound to DNA 分子名称: 5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3', BARIUM ION, Delta-[Ru(bpy)2dppz]2+ 著者 Song, H, Kaiser, J.T, Barton, J.K. 登録日 2012-03-07 公開日 2012-06-20 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (0.92 Å) 主引用文献 Crystal structure of delta-[Ru(bpy)2dppz]2+ bound to mismatched DNA reveals side-by-side metalloinsertion and intercalation. Nat Chem, 4, 2012
3HUE	Structure of the S. pombe Nbs1 FHA-BRCT1-BRCT2 domains 分子名称: DNA repair and telomere maintenance protein nbs1 著者 Williams, R.S, Guenther, G, Tainer, J.A. 登録日 2009-06-13 公開日 2009-10-13 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair. Cell(Cambridge,Mass.), 139, 2009
5DEV	High resolution structure of CCG DNA repeats at 1.71 angstrom resolution 分子名称: DNA (5'-D(*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*A)-3') 著者 Hou, M.H, Jhan, C.R. 登録日 2015-08-26 公開日 2016-09-07 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 High resolution structure of CCG DNA repeats at 1.71 angstrom resolution To Be Published
2QLC	The crystal structure of DNA repair protein RadC from Chlorobium tepidum TLS 分子名称: DNA repair protein radC homolog 著者 Zhang, R, Duggan, E, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2007-07-12 公開日 2007-09-04 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The crystal structure of DNA repair protein RadC from Chlorobium tepidum TLS. To be Published
3U2D	S. aureus GyrB ATPase domain in complex with small molecule inhibitor 分子名称: 4-bromo-5-methyl-N-[1-(3-nitropyridin-2-yl)piperidin-4-yl]-1H-pyrrole-2-carboxamide, DNA gyrase subunit B, MAGNESIUM ION 著者 Boriack-Sjodin, P.A, Prince, D.B, Eakin, A.E, Sherer, B.A. 登録日 2011-10-03 公開日 2012-01-11 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Pyrrolamide DNA gyrase inhibitors: fragment-based nuclear magnetic resonance screening to identify antibacterial agents. Antimicrob.Agents Chemother., 56, 2012
3U2K	S. aureus GyrB ATPase domain in complex with a small molecule inhibitor 分子名称: 2-chloro-6-(4-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}piperidin-1-yl)pyridine-4-carboxamide, DNA gyrase subunit B, MAGNESIUM ION 著者 Boriack-Sjodin, P.A, Prince, D.B, Eakin, A.E, Sherer, B.A. 登録日 2011-10-03 公開日 2012-01-11 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Pyrrolamide DNA gyrase inhibitors: fragment-based nuclear magnetic resonance screening to identify antibacterial agents. Antimicrob.Agents Chemother., 56, 2012
3HUF	Structure of the S. pombe Nbs1-Ctp1 complex 分子名称: DNA repair and telomere maintenance protein nbs1, Double-strand break repair protein ctp1, THIOCYANATE ION 著者 Williams, R.S, Guenther, G, Tainer, J.A. 登録日 2009-06-13 公開日 2009-10-13 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair. Cell(Cambridge,Mass.), 139, 2009
6IYQ	Crystal structure of a DNA duplex cross-linked by 6-thioguanine-6-thioguanine disulfides 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*(S6G)P*(S6G)P*(BRU)P*CP*GP*CP*G)-3') 著者 Kondo, J, Ono, A, Atsugi, T. 登録日 2018-12-17 公開日 2019-10-30 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Crystal structure of a DNA duplex cross-linked by 6-thioguanine-6-thioguanine disulfides: reversible formation and cleavage catalyzed by Cu(II) ion and glutathione Rsc Adv, 2019
3UEO	Crystal structure of TopBP1 BRCT4/5 domains in complex with a phospho-peptide 分子名称: DNA topoisomerase 2-binding protein 1, phospho-peptide 著者 Leung, C.C, Glover, J.N.M. 登録日 2011-10-31 公開日 2013-07-03 最終更新日 2014-03-26 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural insights into recognition of MDC1 by TopBP1 in DNA replication checkpoint control. Structure, 21, 2013
412D	DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-METHYL-[TRI(OXYETHYL)] RIBONUCLEOSIDE 分子名称: DNA (5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3'), MAGNESIUM ION 著者 Tereshko, V, Portmann, S, Tay, E.C, Martin, P, Natt, F, Altmann, K.H, Egli, M. 登録日 1998-06-30 公開日 1998-07-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Correlating structure and stability of DNA duplexes with incorporated 2'-O-modified RNA analogues. Biochemistry, 37, 1998

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