PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5GWL	Structure of two CCTG repeats 分子名称: DNA (5'-D(*CP*CP*TP*GP*CP*CP*TP*G)-3'), SODIUM ION 著者 Guo, P, Lam, S.L. 登録日 2016-09-12 公開日 2016-10-12 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Minidumbbell: A New Form of Native DNA Structure J.Am.Chem.Soc., 138, 2016
5GWQ	Structure of two TTTA repeats 分子名称: DNA (5'-D(*TP*TP*TP*AP*TP*TP*TP*A)-3'), SODIUM ION 著者 Guo, P, Lam, S.L. 登録日 2016-09-13 公開日 2016-10-12 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Minidumbbell: A New Form of Native DNA Structure J.Am.Chem.Soc., 138, 2016
7XFJ	Structure of nucleosome-AAG complex (T-50I, post-catalytic state) 分子名称: DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ... 著者 Zheng, L, Tsai, B, Gao, N. 登録日 2022-04-01 公開日 2023-11-08 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
8W50	Crystal structure of DNA binding and cleavage core of human topoisomerase 2-alpha in a DNA binding-competent conformation 分子名称: DNA topoisomerase 2-alpha, SULFATE ION 著者 Chan, N.L, Liu, K.T, Chen, S.F. 登録日 2023-08-25 公開日 2024-07-24 実験手法 X-RAY DIFFRACTION (2.67 Å) 主引用文献 Structural Basis for the Assembly of Type IIA Topoisomerase DNA Cleavage/Religation Center To Be Published
5Z69	Structure of the recombination mediator protein RecF-ATPrS in RecFOR pathway 分子名称: DNA replication and repair protein RecF, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER 著者 Tang, Q, Liu, Y.-P, Yan, X.-X. 登録日 2018-01-22 公開日 2018-10-17 実験手法 X-RAY DIFFRACTION (2.102 Å) 主引用文献 ATP-dependent conformational change in ABC-ATPase RecF serves as a switch in DNA repair. Sci Rep, 8, 2018
5KES	Solution structure of the yeast Ddi1 HDD domain 分子名称: DNA damage-inducible protein 1 著者 Trempe, J.-F, Ratcliffe, C, Veverka, V, Saskova, K, Gehring, K. 登録日 2016-06-10 公開日 2016-10-05 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family. Sci Rep, 6, 2016
3EUS	The crystal structure of the DNA binding protein from Silicibacter pomeroyi 分子名称: DNA-binding protein 著者 Zhang, R, Li, H, Freeman, L, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2008-10-10 公開日 2008-11-25 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The crystal structure of the DNA binding protein from Silicibacter pomeroyi To be Published
337D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA 分子名称: DNA (5'-D(*GP*CP*GP*(5CM)P*GP*(5CM)P*GP*C)-3') 著者 Mooers, B.H.M, Eichman, B.F, Ho, P.S. 登録日 1997-06-26 公開日 1997-07-21 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published
3E7H	The crystal structure of the beta subunit of the DNA-directed RNA polymerase from Vibrio cholerae O1 biovar eltor 分子名称: DNA-directed RNA polymerase subunit beta 著者 Zhang, R, Wu, R, Freeman, L, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2008-08-18 公開日 2008-10-14 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The crystal structure of the beta subunit of the DNA-directed RNA polymerase from Vibrio cholerae O1 biovar eltor To be Published
6VCS	SRA domain of UHRF1 in complex with DNA 分子名称: DNA (5'-D(*GP*CP*CP*TP*GP*TP*AP*CP*AP*GP*GP*C)-3'), E3 ubiquitin-protein ligase UHRF1, UNK-UNK-UNK-UNK, ... 著者 Dong, C, Tempel, W, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC) 登録日 2019-12-22 公開日 2020-03-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 SRA domain of UHRF1 in complex with DNA To Be Published
2IUT	P. aeruginosa FtsK motor domain, dimeric 分子名称: DNA TRANSLOCASE FTSK, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER 著者 Massey, T.H, Mercogliano, C.P, Yates, J, Sherratt, D.J, Lowe, J. 登録日 2006-06-07 公開日 2006-08-29 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Double-Stranded DNA Translocation: Structure and Mechanism of Hexameric Ftsk Mol.Cell, 23, 2006
4G0F	Crystal structure of the complex of a human telomeric repeat G-quadruplex and N-methyl mesoporphyrin IX (P6) 分子名称: DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N-METHYLMESOPORPHYRIN, POTASSIUM ION 著者 Nicoludis, J.M, Miller, S.T, Jeffrey, P, Lawton, T.J, Rosenzweig, A.C, Yatsunyk, L.A. 登録日 2012-07-09 公開日 2012-12-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Optimized End-Stacking Provides Specificity of N-Methyl Mesoporphyrin IX for Human Telomeric G-Quadruplex DNA. J.Am.Chem.Soc., 134, 2012
8OEX	Crystal structure of the native Z-DNA duplex d(CGCGCG) before soaking of CuCl2 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE 著者 Lambert, M.C, Hall, J.P. 登録日 2023-03-13 公開日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale To Be Published
8OE9	Crystal structure of the Z-DNA duplex d(CGCGCG) soaked in copper(II) chloride and hydrogen peroxide 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE 著者 Lambert, M.C, Hall, J.P. 登録日 2023-03-10 公開日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.04 Å) 主引用文献 Structural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale To Be Published
3C2J	Crystal structure analysis of trioxacarcin A covalently bound to d(AACCGGTT) 分子名称: DNA (5'-D(*DAP*DAP*DCP*DCP*DGP*DGP*DTP*DT)-3'), Trioxacarcin A 著者 Pfoh, R, Sheldrick, G.M. 登録日 2008-01-25 公開日 2008-06-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Crystal structure of trioxacarcin A covalently bound to DNA Nucleic Acids Res., 36, 2008
4FXM	Crystal structure of the complex of a human telomeric repeat G-quadruplex and N-methyl mesoporphyrin IX (P21212) 分子名称: DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N-METHYLMESOPORPHYRIN, POTASSIUM ION 著者 Nicoludis, J.M, Miller, S.T, Jeffrey, P, Lawton, T.J, Rosenzweig, A.C, Yatsunyk, L.A. 登録日 2012-07-03 公開日 2012-12-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.651 Å) 主引用文献 Optimized End-Stacking Provides Specificity of N-Methyl Mesoporphyrin IX for Human Telomeric G-Quadruplex DNA. J.Am.Chem.Soc., 134, 2012
5V3G	PRDM9-allele-C ZnF8-13 分子名称: DNA (5'-D(*AP*GP*GP*GP*CP*AP*AP*CP*GP*CP*TP*CP*AP*CP*TP*GP*GP*GP*GP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*CP*CP*CP*CP*AP*GP*TP*GP*AP*GP*CP*GP*TP*TP*GP*CP*CP*C)-3'), PR domain zinc finger protein 9, ... 著者 Patel, A, Cheng, X. 登録日 2017-03-07 公開日 2017-08-23 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.416 Å) 主引用文献 Structural basis of human PR/SET domain 9 (PRDM9) allele C-specific recognition of its cognate DNA sequence. J. Biol. Chem., 292, 2017
1IQR	Crystal structure of DNA photolyase from Thermus thermophilus 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, photolyase 著者 Komori, H, Masui, R, Kuramitsu, S, Yokoyama, S, Shibata, T, Inoue, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2001-07-27 公開日 2001-11-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism. Proc.Natl.Acad.Sci.USA, 98, 2001
8JCD	Human H2BFWTH100R nucleosome with 601 DNA 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type W-T, ... 著者 Ding, D.B, Ishibashi, T, Nguyen, T.T. 登録日 2023-05-11 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.14 Å) 主引用文献 Human H2BFWTH100R nucleosome with 601 DNA to be published
8JBX	Human canonical 601 DNA nucleosome 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-C/E/F/G/I, ... 著者 Ding, D.B, Ishibashi, T, Nguyen, T.T. 登録日 2023-05-09 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Human canonical 601 DNA nucleosome to be published
2N3M	G-quadruplex structure of an anti-proliferative DNA sequence 分子名称: DNA_(28-MER) 著者 Do, N.Q, Chung, W.J, Truong, T.H.A, Heddi, B, Phan, A.T. 登録日 2015-06-05 公開日 2016-07-06 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 G-quadruplex structure of an anti-proliferative DNA sequence To be Published
4IM9	Cystal structure of DnaG primase C-terminal domain from Vibrio cholerae 分子名称: DNA primase 著者 Abdul Rehman, S.A, Tarique, K.F, Gourinath, S. 登録日 2013-01-02 公開日 2014-05-07 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Cystal structure of DnaG primase C-terminal domain from Vibrio cholerae To be Published
7VP2	Structure of a transcription factor and DNA complex 分子名称: DNA (5'-D(*AP*TP*GP*TP*GP*GP*TP*CP*CP*CP*CP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*GP*GP*GP*GP*AP*CP*CP*AP*CP*A)-3'), Transcription factor TCP10 著者 Zhang, Y, Xu, Y.P, Wang, B, Su, X.D. 登録日 2021-10-15 公開日 2022-10-19 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Structural basis for DNA recognition by TCP transcription factors To Be Published
7VP4	Structure of a transcription factor and DNA complex 分子名称: DNA (5'-D(*AP*TP*GP*TP*GP*GP*TP*CP*CP*CP*CP*AP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*TP*GP*GP*GP*GP*AP*CP*CP*AP*CP*A)-3'), Transcription factor TCP10 著者 Zhang, Y, Xu, Y.P, Wang, B, Su, X.D. 登録日 2021-10-15 公開日 2022-10-19 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.04 Å) 主引用文献 Structural basis for DNA recognition by TCP transcription factors To Be Published
2WTF	DNA polymerase eta in complex with the cis-diammineplatinum (II) 1,3- GTG intrastrand cross-link 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*GP*TP*GP*GP*TP*GP*AP*GP*CP)-3', 5'-D(*TP*CP*TP*TP*CP*TP*GP*TP*GP*CP *TP*CP*AP*CP*CP*AP*CP)-3', ... 著者 Reissner, T, Schneider, S, Ziv, O, Schorr, S, Livneh, Z, Carell, T. 登録日 2009-09-16 公開日 2010-03-31 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of a Cisplatin-(1,3-Gtg) Cross-Link within DNA Polymerase Eta. Angew.Chem.Int.Ed.Engl., 49, 2010

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