PDB: 37819 件ウェブページステータス検索Chemie searchBIRD

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6S3M	Crystal structure of helicase Pif1 from Thermus oshimai in complex with ssDNA (dT)18 and ADP-AlF4 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*TP*G)-3'), MAGNESIUM ION, ... 著者 Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G. 登録日 2019-06-25 公開日 2021-01-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.113 Å) 主引用文献 Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition. Nucleic Acids Res., 49, 2021
6S3O	Crystal structure of helicase Pif1 from Thermus oshimai in complex with ssDNA (dT)18 and ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ... 著者 Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G. 登録日 2019-06-25 公開日 2021-01-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.974 Å) 主引用文献 Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition. Nucleic Acids Res., 49, 2021
4O0I	Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with 2'-MeSe-arabino-guanosine derivatized DNA 分子名称: 5'-D(*C*(1TW)P*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', DNA polymerase I, GLYCEROL, ... 著者 Jiang, S, Gan, J, Sun, H, Huang, Z. 登録日 2013-12-13 公開日 2014-12-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.203 Å) 主引用文献 Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with 2'-MeSe-arabino-guanosine derivatized DNA TO BE PUBLISHED
7TGG	Cryo-EM structure of PilA-N and PilA-C from Geobacter sulfurreducens 分子名称: Geopilin domain 1 protein, Geopilin domain 2 protein 著者 Wang, F, Mustafa, K, Chan, C.H, Joshi, K, Bond, D.R, Hochbaum, A.I, Egelman, E.H. 登録日 2022-01-07 公開日 2022-02-23 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Cryo-EM structure of an extracellular Geobacter OmcE cytochrome filament reveals tetrahaem packing. Nat Microbiol, 7, 2022
3TAR	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-6) Position 分子名称: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*GP*TP*C)-3', DNA polymerase I, ... 著者 Wang, W, Beese, L.S. 登録日 2011-08-04 公開日 2011-10-19 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
5H56	ADP and dTDP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, ... 著者 Biswas, A, Jeyakanthan, J, Sekar, K, Kuramitsu, S, Yokoyama, S. 登録日 2016-11-04 公開日 2017-06-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate FEBS J., 284, 2017
1QMP	Phosphorylated aspartate in the crystal structure of the sporulation response regulator, Spo0A 分子名称: CALCIUM ION, Stage 0 sporulation protein A 著者 Lewis, R.J, Brannigan, J.A, Muchova, K, Barak, I, Wilkinson, A.J. 登録日 1999-10-04 公開日 1999-11-14 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Phosphorylated aspartate in the structure of a response regulator protein. J. Mol. Biol., 294, 1999
3SAR	MUTM Slanted complex 1 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*(CX2) P*TP*AP*CP*C)-3', Formamidopyrimidine-DNA glycosylase, ... 著者 Banerjee, A, Qi, Y, Spong, M.C, Verdine, G.L. 登録日 2011-06-03 公開日 2012-01-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Strandwise translocation of a DNA glycosylase on undamaged DNA. Proc.Natl.Acad.Sci.USA, 109, 2012
2A30	Crystal structure of human deoxycytidine kinase in complex with deoxycytidine 分子名称: 2'-DEOXYCYTIDINE, CALCIUM ION, Deoxycytidine kinase 著者 Godsey, M.H, Ort, S, Sabini, E, Konrad, M, Lavie, A. 登録日 2005-06-23 公開日 2006-01-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.02 Å) 主引用文献 Structural basis for the preference of UTP over ATP in human deoxycytidine kinase: illuminating the role of main-chain reorganization. Biochemistry, 45, 2006
3SJ1	PpcA M58D mutant 分子名称: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID, CYTOCHROME C7, HEME C, ... 著者 Pokkuluri, P.R, Schiffer, M. 登録日 2011-06-20 公開日 2012-07-04 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Pitfalls in the interpretation of structural changes in mutant proteins from crystal structures. J.Struct.Funct.Genom., 13, 2012
6S3I	Crystal structure of helicase Pif1 from Thermus oshimai in complex with ssDNA (dT)18 and ADP-MgF4 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ... 著者 Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G. 登録日 2019-06-25 公開日 2021-01-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.455 Å) 主引用文献 Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition. Nucleic Acids Res., 49, 2021
3SBS	Crystal structure of Aar2 protein 分子名称: A1 cistron-splicing factor AAR2 著者 Weber, G, Santos, K.F, Holton, N, Wahl, M.C. 登録日 2011-06-06 公開日 2012-04-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Mechanism for Aar2p function as a U5 snRNP assembly factor. Genes Dev., 25, 2011
6S3P	Crystal structure of helicase Pif1 from Thermus oshimai in complex with (dT)18 分子名称: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3'), PIF1 helicase 著者 Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G. 登録日 2019-06-25 公開日 2021-01-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.926 Å) 主引用文献 Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition. Nucleic Acids Res., 49, 2021
3SJ0	PpcA mutant M58S 分子名称: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID, CYTOCHROME C7, HEME C, ... 著者 Pokkuluri, P.R, Schiffer, M. 登録日 2011-06-20 公開日 2012-07-04 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Pitfalls in the interpretation of structural changes in mutant proteins from crystal structures. J.Struct.Funct.Genom., 13, 2012
3SYM	Glycogen Phosphorylase b in complex with 3 -C-(hydroxymethyl)-beta-D-glucopyranonucleoside of 5-fluorouracil 分子名称: 5-fluoro-1-[3-C-(hydroxymethyl)-beta-D-glucopyranosyl]pyrimidine-2,4(1H,3H)-dione, Glycogen phosphorylase, muscle form 著者 Skamnaki, V.T, Katsandi, A.L, Kontou, M, Leonidas, D.D. 登録日 2011-07-18 公開日 2012-02-15 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 3'-Axial CH(2) OH Substitution on Glucopyranose does not Increase Glycogen Phosphorylase Inhibitory Potency. QM/MM-PBSA Calculations Suggest Why. Chem.Biol.Drug Des., 79, 2012
2BDS	DETERMINATION OF THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE ANTIHYPERTENSIVE AND ANTIVIRAL PROTEIN BDS-I FROM THE SEA ANEMONE ANEMONIA SULCATA. A STUDY USING NUCLEAR MAGNETIC RESONANCE AND HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING 分子名称: BDS-I 著者 Clore, G.M, Driscoll, P.C, Gronenborn, A.M. 登録日 1988-11-14 公開日 1989-04-19 最終更新日 2024-10-23 実験手法 SOLUTION NMR 主引用文献 Determination of the three-dimensional solution structure of the antihypertensive and antiviral protein BDS-I from the sea anemone Anemonia sulcata: a study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing. Biochemistry, 28, 1989
8VHN	Crystal Structure of E. coli class Ia ribonucleotide reductase alpha subunit bound to two ATP molecules 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ... 著者 Funk, M.A, Zimanyi, C.M, Drennan, C.L. 登録日 2024-01-02 公開日 2024-09-04 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.62 Å) 主引用文献 How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase. Biochemistry, 63, 2024
5H5K	ATP and CMP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5 分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, ... 著者 Biswas, A, Jeyakanthan, J, Sekar, K. 登録日 2016-11-06 公開日 2017-06-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate FEBS J., 284, 2017
4OWZ	Structure of ECP/H15A mutant. 分子名称: CITRIC ACID, Eosinophil cationic protein, FE (III) ION 著者 Blanco, J.A, Salazar, V.A, Boix, E, Moussaoui, M. 登録日 2014-02-04 公開日 2015-03-04 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Structure of a ECP/H15A mutant at 1.47 Angstroms resolution To be published
5HON	Structure of Domain 4 of AbnA, a GH43 extracellular arabinanase from Geobacillus stearothermophilus, in complex with arabinotriose 分子名称: CALCIUM ION, Extracellular arabinanase, alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose 著者 Lansky, S, Azoulai, D, Shwartstien, O, Shoham, Y, Shoham, G. 登録日 2016-01-19 公開日 2017-02-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Structure of Domain 4 of AbnA, a GH43 extracellular arabinanase from Geobacillus stearothermophilus, in complex with arabinotriose To Be Published
6S8Q	Human Brr2 Helicase Region in complex with C-tail deleted Jab1 分子名称: Pre-mRNA-processing-splicing factor 8, SULFATE ION, U5 small nuclear ribonucleoprotein 200 kDa helicase 著者 Santos, K.F, Vester, K, Wahl, M.C. 登録日 2019-07-10 公開日 2020-01-22 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.391 Å) 主引用文献 The inactive C-terminal cassette of the dual-cassette RNA helicase BRR2 both stimulates and inhibits the activity of the N-terminal helicase unit. J.Biol.Chem., 295, 2020
6S9I	Human Brr2 Helicase Region D534C/N1866C in complex with C-tail deleted Jab1 分子名称: Pre-mRNA-processing-splicing factor 8, U5 small nuclear ribonucleoprotein 200 kDa helicase 著者 Vester, K, Santos, K.F, Wahl, M.C. 登録日 2019-07-13 公開日 2020-01-22 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.598 Å) 主引用文献 The inactive C-terminal cassette of the dual-cassette RNA helicase BRR2 both stimulates and inhibits the activity of the N-terminal helicase unit. J.Biol.Chem., 295, 2020
4O8C	Structure of the H170Y mutant of thermostable p-nitrophenylphosphatase from Bacillus Stearothermophilus 分子名称: MAGNESIUM ION, SULFATE ION, Thermostable NPPase 著者 Shen, T, Guo, Z, Wang, F, Gong, W, Ji, C. 登録日 2013-12-27 公開日 2014-06-18 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of a His170Tyr mutant of thermostable pNPPase from Geobacillus stearothermophilus. Acta Crystallogr.,Sect.F, 70, 2014
4OEB	Structure of membrane binding protein pleurotolysin A from Pleurotus ostreatus 分子名称: Pleurotolysin A, SULFATE ION 著者 Dunstone, M.A, Caradoc-Davies, T.T, Whisstock, J.C, Law, R.H.P. 登録日 2014-01-12 公開日 2015-02-18 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Conformational Changes during Pore Formation by the Perforin-Related Protein Pleurotolysin. Plos Biol., 13, 2015
5HOF	Crystal structure of AbnA, a GH43 extracellular arabinanase from Geobacillus stearothermophilus, in complex with arabinopentaose 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CALCIUM ION, ... 著者 Lansky, S, Shwartstien, O, Salama, R, Shoham, Y, Shoham, G. 登録日 2016-01-19 公開日 2017-02-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.96 Å) 主引用文献 Crystal structure of AbnA, a GH43 extracellular arabinanase from Geobacillus stearothermophilus, in complex with arabinopentaose To Be Published

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