PDB: 7129 件ウェブページステータス検索Chemie searchBIRD

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4UY8	Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome 分子名称: 50S RIBOSOMAL PROTEIN L10, 50S RIBOSOMAL PROTEIN L11, 50S RIBOSOMAL PROTEIN L13, ... 著者 Bischoff, L, Berninghausen, O, Beckmann, R. 登録日 2014-08-29 公開日 2014-10-29 最終更新日 2018-10-03 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor. Cell Rep., 9, 2014
4V90	Thermus thermophilus Ribosome 分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Chen, Y, Feng, S, Kumar, V, Ero, R, Gao, Y.G. 登録日 2014-02-22 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structure of EF-G-ribosome complex in a pretranslocation state. Nat. Struct. Mol. Biol., 20, 2013
4V63	Structural basis for translation termination on the 70S ribosome. 分子名称: 16S RRNA, 23S RRNA, 30S ribosomal protein S10, ... 著者 Laurberg, M, Asahara, H, Korostelev, A, Zhu, J, Trakhanov, S, Noller, H.F. 登録日 2008-05-16 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.207 Å) 主引用文献 Structural basis for translation termination on the 70S ribosome Nature, 454, 2008
4V87	Crystal structure analysis of ribosomal decoding. 分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Demeshkina, N, Jenner, L, Yusupov, M, Yusupova, G. 登録日 2011-09-20 公開日 2014-07-09 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 A new understanding of the decoding principle on the ribosome. Nature, 484, 2012
4V9Q	Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svidritskiy, E, Ling, C, Ermolenko, D.N, Korostelev, A.A. 登録日 2013-06-12 公開日 2014-07-09 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome. Proc.Natl.Acad.Sci.USA, 110, 2013
4V4J	Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. 分子名称: 16S RNA, 23S LARGE SUBUNIT RIBOSOMAL RNA, 30S ribosomal protein S10, ... 著者 Korostelev, A, Trakhanov, S, Asahara, H, Laurberg, M, Noller, H.F. 登録日 2007-07-18 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.83 Å) 主引用文献 Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome. Proc.Natl.Acad.Sci.Usa, 104, 2007
4V6G	Initiation complex of 70S ribosome with two tRNAs and mRNA. 分子名称: 16S RRNA (E.COLI NUMBERING), 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Jenner, L.B, Yusupova, G, Yusupov, M. 登録日 2009-07-10 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural aspects of messenger RNA reading frame maintenance by the ribosome. Nat.Struct.Mol.Biol., 17, 2010
4V84	Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. 分子名称: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S. 登録日 2010-12-13 公開日 2014-07-09 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome. Proc.Natl.Acad.Sci.USA, 108, 2011
5L3P	Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Arenz, S, Wilson, D.N. 登録日 2016-05-24 公開日 2016-07-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 The stringent factor RelA adopts an open conformation on the ribosome to stimulate ppGpp synthesis. Nucleic Acids Res., 44, 2016
5LI0	70S ribosome from Staphylococcus aureus 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Khusainov, I, Vicens, Q, Bochler, A, Grosse, F, Myasnikov, A, Menetret, J.F, Chicher, J, Marzi, S, Romby, P, Yusupova, G, Yusupov, M, Hashem, Y. 登録日 2016-07-13 公開日 2016-12-28 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structure of the 70S ribosome from human pathogen Staphylococcus aureus. Nucleic Acids Res., 44, 2016
5LZU	Structure of the mammalian ribosomal termination complex with accommodated eRF1 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. 登録日 2016-10-02 公開日 2016-11-30 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
5LZA	Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
5LZF	Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
1GO0	NMR Structure of Ribosomal Protein L30e from Thermococcus celer 分子名称: 50S RIBOSOMAL PROTEIN L30E 著者 Chan, S.-H, Bycroft, M, Freund, S.M.V, Wong, K.-B. 登録日 2001-10-15 公開日 2003-06-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution Structure and Thermal Stability of Ribosomal Protein L30E from Hyperthermophilic Archaeon Thermococcus Celer Protein Sci., 12, 2003
5LZD	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
5LZT	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. 登録日 2016-10-02 公開日 2016-11-30 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.65 Å) 主引用文献 Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
5LZC	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
5LZE	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
5LZV	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. 登録日 2016-10-02 公開日 2016-11-30 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
5LZB	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fischer, N, Neumann, P, Bock, L.V, Maracci, C, Wang, Z, Paleskava, A, Konevega, A.L, Schroeder, G.F, Grubmueller, H, Ficner, R, Rodnina, M.V, Stark, H. 登録日 2016-09-29 公開日 2016-11-23 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (5.3 Å) 主引用文献 The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature, 540, 2016
5LZS	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B 分子名称: (2~{S})-~{N}-[(2~{R})-1-[[(3~{S},6~{S},8~{S},12~{S},13~{R},16~{S},17~{R},20~{S},23~{S})-13-[(2~{S})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-~{N}-methyl-1-[(2~{S})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide, 18S ribosomal RNA, 28S ribosomal RNA, ... 著者 Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. 登録日 2016-10-02 公開日 2016-11-30 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.31 Å) 主引用文献 Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
4ADV	Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit 分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Boehringer, D, O'Farrell, H.C, Rife, J.P, Ban, N. 登録日 2012-01-03 公開日 2012-02-15 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (13.5 Å) 主引用文献 Structural Insights Into Methyltransferase Ksga Function in 30S Ribosomal Subunit Biogenesis J.Biol.Chem., 287, 2012
5DC3	Complex of yeast 80S ribosome with non-modified eIF5A 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Melnikov, S, Mailliot, J, Shin, B.-S, Rigger, L, Yusupova, G, Micura, R, Dever, T.E, Yusupov, M. 登録日 2015-08-23 公開日 2016-06-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Crystal Structure of Hypusine-Containing Translation Factor eIF5A Bound to a Rotated Eukaryotic Ribosome. J.Mol.Biol., 428, 2016
4WCE	The crystal structure of the large ribosomal subunit of Staphylococcus aureus 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 23S rRNA, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Eyal, Z, Matzov, D, Krupkin, M, Wekselman, I, Zimmerman, E, Rozenberg, H, Bashan, A, Yonath, A. 登録日 2014-09-04 公開日 2015-10-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.526 Å) 主引用文献 Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus. Proc.Natl.Acad.Sci.USA, 112, 2015
5W4K	Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Metelev, M, Osterman, I.A, Ghilarov, D, Khabibullina, N.F, Yakimov, A, Shabalin, K, Utkina, I, Travin, D.Y, Komarova, E.S, Serebryakova, M, Artamonova, T, Khodorkovskii, M, Konevega, A.L, Sergiev, P.V, Severinov, K, Polikanov, Y.S. 登録日 2017-06-12 公開日 2017-08-30 最終更新日 2019-12-04 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel. Nat. Chem. Biol., 13, 2017

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