PDB: 7386 件ウェブページステータス検索Chemie searchBIRD

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5FCJ	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Mailliot, J, Garreau de Loubresse, N, Yusupova, G, Dinman, J.D, Yusupov, M. 登録日 2015-12-15 公開日 2016-05-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency. J.Mol.Biol., 428, 2016
6HCF	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S. 登録日 2018-08-14 公開日 2018-10-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 ZNF598 Is a Quality Control Sensor of Collided Ribosomes. Mol. Cell, 72, 2018
3H5K	Crystal structure of the ribosome inactivating protein PDL1 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome-inactivating protein PD-L1/PD-L2 著者 Ruggiero, A, Di Maro, A, Severino, V, Chambery, A, Berisio, R. 登録日 2009-04-22 公開日 2009-10-13 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Crystal structure of PD-L1, a ribosome inactivating protein from Phytolacca dioica L. Leaves with the property to induce DNA cleavage Biopolymers, 91, 2009
5GAK	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A 分子名称: 25S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, 5.8S rRNA, ... 著者 Schmidt, C, Becker, T. 登録日 2015-12-09 公開日 2016-02-24 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.88 Å) 主引用文献 Structure of the hypusinylated eukaryotic translation factor eIF-5A bound to the ribosome. Nucleic Acids Res., 44, 2016
7O81	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. 登録日 2021-04-14 公開日 2021-06-02 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
4V61	Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome. 分子名称: 16S rRNA, 23S rRNA, 4.8S rRNA, ... 著者 Sharma, M.R, Wilson, D.N, Datta, P.P, Barat, C, Schluenzen, F, Fucini, P, Agrawal, R.K. 登録日 2007-11-09 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (9.4 Å) 主引用文献 Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins Proc.Natl.Acad.Sci.Usa, 104, 2007
6RXV	Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2 分子名称: 35S ribosomal RNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ... 著者 Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E. 登録日 2019-06-10 公開日 2019-08-14 最終更新日 2019-10-02 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration. Mol.Cell, 75, 2019
4V5Z	Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map 分子名称: 18S Ribosomal RNA, 28S Ribosomal RNA, 40S Ribosomal protein RACK1, ... 著者 Chandramouli, P, Akey, C.W. 登録日 2008-03-27 公開日 2014-07-09 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (8.7 Å) 主引用文献 Structure of the Mammalian 80S Ribosome at 8.7 A Resolution Structure, 16, 2008
6XIR	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress 分子名称: 18S ribosomal RNA, 35S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Zhou, Y, Bartesaghi, A, Silva, G.M. 登録日 2020-06-21 公開日 2020-08-26 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress. Proc.Natl.Acad.Sci.USA, 117, 2020
6NU2	Structural insights into unique features of the human mitochondrial ribosome recycling 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... 著者 Sharma, M.R, Koripella, R.K, Agrawal, R.K. 登録日 2019-01-30 公開日 2019-04-17 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural insights into unique features of the human mitochondrial ribosome recycling. Proc.Natl.Acad.Sci.USA, 116, 2019
6XIQ	Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress 分子名称: 18S ribosomal RNA, 35S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Zhou, Y, Bartesaghi, A, Silva, G.M. 登録日 2020-06-21 公開日 2020-08-26 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress. Proc.Natl.Acad.Sci.USA, 117, 2020
6RXU	Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1 分子名称: 35S rRNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ... 著者 Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E. 登録日 2019-06-10 公開日 2019-08-14 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration. Mol.Cell, 75, 2019
7M4W	A. baumannii Ribosome-Eravacycline complex: Empty 70S 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2021-03-22 公開日 2021-05-19 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.55 Å) 主引用文献 Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii. Mbio, 12, 2021
7M4X	A. baumannii Ribosome-Eravacycline complex: P-site tRNA 70S 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2021-03-22 公開日 2021-05-19 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.66 Å) 主引用文献 Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii. Mbio, 12, 2021
4Y4O	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Polikanov, Y.S, Melnikov, S.V, Soll, D, Steitz, T.A. 登録日 2015-02-10 公開日 2015-03-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly. Nat.Struct.Mol.Biol., 22, 2015
7UVW	A. baumannii ribosome: 70S with E-site tRNA 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2022-05-02 公開日 2023-04-19 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (2.37 Å) 主引用文献 Streptothricin F is a bactericidal antibiotic effective against highly drug-resistant gram-negative bacteria that interacts with the 30S subunit of the 70S ribosome. Plos Biol., 21, 2023
4BEH	Solution structure of human ribosomal protein P1.P2 heterodimer 分子名称: 60S ACIDIC RIBOSOMAL PROTEIN P1, 60S ACIDIC RIBOSOMAL PROTEIN P2 著者 Lee, K.M, Yusa, K, Chu, L.O, Wing-Heng Yu, C, Shaw, P.C, Oono, M, Miyoshi, T, Ito, K, Wong, K.B, Uchiumi, T. 登録日 2013-03-10 公開日 2013-08-14 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Solution Structure of Human P1P2 Heterodimer Provides Insights Into the Role of Eukaryotic Stalk in Recruiting the Ribosome-Inactivating Protein Trichosanthin to the Ribosome. Nucleic Acids Res., 41, 2013
7MD7	Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Chen, C.-W, Pavlova, J.A, Lukianov, D.A, Tereshchenkov, A.G, Makarov, G.I, Khairullina, Z.Z, Tashlitsky, V.N, Paleskava, A, Konevega, A.L, Bogdanov, A.A, Osterman, I.A, Sumbatyan, N.V, Polikanov, Y.S. 登録日 2021-04-03 公開日 2021-04-21 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Binding and Action of Triphenylphosphonium Analog of Chloramphenicol upon the Bacterial Ribosome. Antibiotics, 10, 2021
5TCU	Methicillin sensitive Staphylococcus aureus 70S ribosome 分子名称: 16S RRNA, 23S RRNA, 30S ribosomal protein S10, ... 著者 Eyal, Z, Ahmed, T, Belousoff, N, Mishra, S, Matzov, D, Bashan, A, Zimmerman, E, Lithgow, T, Bhushan, S, Yonath, A. 登録日 2016-09-15 公開日 2017-05-24 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural Basis for Linezolid Binding Site Rearrangement in the Staphylococcus aureus Ribosome. MBio, 8, 2017
6RXZ	Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state b 分子名称: 35S ribosomal RNA, 40S ribosomal protein S11-like protein, 40S ribosomal protein S13-like protein, ... 著者 Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E. 登録日 2019-06-10 公開日 2019-08-14 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration. Mol.Cell, 75, 2019
6TNU	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. 分子名称: 18S rRNA, 25S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ... 著者 Buschauer, R, Cheng, J, Berninghausen, O, Tesina, P, Becker, T, Beckmann, R. 登録日 2019-12-10 公開日 2020-04-22 最終更新日 2020-04-29 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The Ccr4-Not complex monitors the translating ribosome for codon optimality. Science, 368, 2020
6RXX	Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state C, Poly-Ala 分子名称: 35S ribosomal RNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ... 著者 Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E. 登録日 2019-06-10 公開日 2019-08-14 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (7.1 Å) 主引用文献 Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration. Mol.Cell, 75, 2019
7NBU	Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Giudice, E, Mansour, M, Chat, S, D'Urso, G, Gillet, R, Genevaux, P. 登録日 2021-01-27 公開日 2022-03-02 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.11 Å) 主引用文献 Substrate recognition and cryo-EM structure of the ribosome-bound TAC toxin of Mycobacterium tuberculosis. Nat Commun, 13, 2022
5W4K	Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Metelev, M, Osterman, I.A, Ghilarov, D, Khabibullina, N.F, Yakimov, A, Shabalin, K, Utkina, I, Travin, D.Y, Komarova, E.S, Serebryakova, M, Artamonova, T, Khodorkovskii, M, Konevega, A.L, Sergiev, P.V, Severinov, K, Polikanov, Y.S. 登録日 2017-06-12 公開日 2017-08-30 最終更新日 2019-12-04 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel. Nat. Chem. Biol., 13, 2017
2GO5	Structure of signal recognition particle receptor (SR) in complex with signal recognition particle (SRP) and ribosome nascent chain complex 分子名称: SRP RNA, Signal recognition particle 19 kDa protein (SRP19), Signal recognition particle 54 kDa protein (SRP54), ... 著者 Halic, M, Gartmann, M, Schlenker, O, Mielke, T, Pool, M.R, Sinning, I, Beckmann, R. 登録日 2006-04-12 公開日 2006-06-13 最終更新日 2011-07-13 実験手法 ELECTRON MICROSCOPY (7.4 Å) 主引用文献 Signal Recognition Particle Receptor Exposes the Ribosomal Translocon Binding Site Science, 312, 2006

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