Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9B5E
DownloadVisualize
BU of 9b5e by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from consensus
分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (2.81 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
5JWL
DownloadVisualize
BU of 5jwl by Molmil
Factor Inhibiting HIF D201E in Complex with Zn, and Alpha-Ketoglutarate
分子名称: 2-OXOGLUTARIC ACID, DI(HYDROXYETHYL)ETHER, Hypoxia-inducible factor 1-alpha inhibitor, ...
著者Taabazuing, C.Y, Garman, S.C, Eron, S, Knapp, M.J.
登録日2016-05-12
公開日2017-05-17
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Factor Inhibiting HIF D201E in Complex with Zn, and Alpha-Ketoglutarate
To Be Published
9BLG
DownloadVisualize
BU of 9blg by Molmil
Crystal structure of non-receptor protein tyrosine phosphatase SHP2 in complex with PF-07284892
分子名称: (1S)-1'-{6-[(2-amino-3-chloropyridin-4-yl)sulfanyl]-1,2,4-triazin-3-yl}-1,3-dihydrospiro[indene-2,4'-piperidin]-1-amine, Tyrosine-protein phosphatase non-receptor type 11
著者Bester, S.M, Wu, W.-I, Mou, T.-C.
登録日2024-04-30
公開日2024-05-29
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献SHP2 Inhibition Sensitizes Diverse Oncogene-Addicted Solid Tumors to Re-treatment with Targeted Therapy.
Cancer Discov, 13, 2023
6LAV
DownloadVisualize
BU of 6lav by Molmil
MicroED structure of lysozyme at 1.73A determained using crystal lamellas prepared by focused ion beam milling
分子名称: ACETATE ION, Lysozyme C
著者Zhou, H, Luo, Z, Li, X.
登録日2019-11-13
公開日2019-11-27
最終更新日2024-10-23
実験手法ELECTRON CRYSTALLOGRAPHY (1.73 Å)
主引用文献Using focus ion beam to prepare crystal lamella for electron diffraction.
J. Struct. Biol., 205, 2019
5JWV
DownloadVisualize
BU of 5jwv by Molmil
T4 Lysozyme L99A/M102Q with Ethylbenzene Bound
分子名称: Endolysin, PHENYLETHANE
著者Lee, H, Fischer, M, Shoichet, B.K, Liu, S.-Y.
登録日2016-05-12
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.
J.Am.Chem.Soc., 138, 2016
9B92
DownloadVisualize
BU of 9b92 by Molmil
Cryo-EM structure of the human TRPM4 in complex with calcium at 18 degrees Celsius
分子名称: CALCIUM ION, Transient receptor potential cation channel subfamily M member 4
著者Hu, J, Lu, W, Du, J.
登録日2024-04-01
公開日2024-05-15
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Physiological temperature drives TRPM4 ligand recognition and gating.
Nature, 630, 2024
9B8X
DownloadVisualize
BU of 9b8x by Molmil
Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium 37 degrees Celsius
分子名称: CALCIUM ION, Transient receptor potential cation channel subfamily M member 4
著者Hu, J, Lu, W, Du, J.
登録日2024-04-01
公開日2024-05-15
最終更新日2025-05-21
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Physiological temperature drives TRPM4 ligand recognition and gating.
Nature, 630, 2024
5K36
DownloadVisualize
BU of 5k36 by Molmil
Structure of an eleven component nuclear RNA exosome complex bound to RNA
分子名称: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ...
著者Lima, C.D, Zinder, J.C.
登録日2016-05-19
公開日2016-11-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Nuclear RNA Exosome at 3.1 angstrom Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3.
Mol.Cell, 64, 2016
5K4L
DownloadVisualize
BU of 5k4l by Molmil
Crystal structure of KDM5A in complex with a naphthyridone inhibitor
分子名称: Lysine-specific demethylase 5A, NICKEL (II) ION, Unknown Peptide, ...
著者Kiefer, J.R, Vinogradova, M.V.
登録日2016-05-20
公開日2016-08-10
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.179 Å)
主引用文献Design and evaluation of 1,7-naphthyridones as novel KDM5 inhibitors.
Bioorg.Med.Chem.Lett., 26, 2016
9B8Y
DownloadVisualize
BU of 9b8y by Molmil
Cryo-EM structure of the human TRPM4 channel in complex with calcium and decavanadate at 37 degrees Celsius
分子名称: CALCIUM ION, DECAVANADATE, Transient receptor potential cation channel subfamily M member 4
著者Hu, J, Lu, W, Du, J.
登録日2024-04-01
公開日2024-05-15
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Physiological temperature drives TRPM4 ligand recognition and gating.
Nature, 630, 2024
5K4W
DownloadVisualize
BU of 5k4w by Molmil
Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei bound to NADH and L-threonine refined to 1.72 angstroms
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, GLYCEROL, L-threonine 3-dehydrogenase, ...
著者Adjogatse, E.A, Erskine, P.T, Cooper, J.B.
登録日2016-05-22
公開日2018-01-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Structure and function of L-threonine-3-dehydrogenase from the parasitic protozoan Trypanosoma brucei revealed by X-ray crystallography and geometric simulations.
Acta Crystallogr D Struct Biol, 74, 2018
9B8W
DownloadVisualize
BU of 9b8w by Molmil
Cryo-EM structure of the human TRPM4 in complex with calcium at 37 degrees Celsius
分子名称: CALCIUM ION, Transient receptor potential cation channel subfamily M member 4
著者Hu, J, Lu, W, Du, J.
登録日2024-04-01
公開日2024-05-15
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Physiological temperature drives TRPM4 ligand recognition and gating.
Nature, 630, 2024
5JX4
DownloadVisualize
BU of 5jx4 by Molmil
Crystal structure of E36-G37del mutant of the Bacillus caldolyticus cold shock protein.
分子名称: Cold shock protein CspB, SULFATE ION
著者Carvajal, A, Castro-Fernandez, V, Cabrejos, D, Fuentealba, M, Pereira, H.M, Vallejos, G, Cabrera, R, Garratt, R.C, Komives, E.A, Ramirez-Sarmiento, C.A, Babul, J.
登録日2016-05-12
公開日2017-05-10
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unusual dimerization of a BcCsp mutant leads to reduced conformational dynamics.
FEBS J., 284, 2017
9B3Q
DownloadVisualize
BU of 9b3q by Molmil
The structure of the human cardiac F-actin mutant A331P
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha cardiac muscle 1, ...
著者Doran, M.H, Sousa, D, Rynkiewicz, M.J, Lehman, W, Cammarato, A.
登録日2024-03-20
公開日2024-05-29
最終更新日2025-06-04
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structure of human cardiac actin
To Be Published
9BNJ
DownloadVisualize
BU of 9bnj by Molmil
Proteus vulgaris tryptophan indole-lyase aminoacrylate complex with benzimidazole
分子名称: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid, BENZIMIDAZOLE, CHLORIDE ION, ...
著者Phillips, R.S.
登録日2024-05-02
公開日2024-05-29
最終更新日2025-02-12
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Structural Snapshots of Proteus vulgaris Tryptophan Indole-Lyase Reveal Insights into the Catalytic Mechanism.
Acs Catalysis, 14, 2024
9B55
DownloadVisualize
BU of 9b55 by Molmil
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 1
分子名称: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (3.23 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5G
DownloadVisualize
BU of 9b5g by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 2 map and model (Ub(A)/ATP/Mg)
分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (2.67 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5P
DownloadVisualize
BU of 9b5p by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 1 map and model (ATP/Mg)
分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-25
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
5K6N
DownloadVisualize
BU of 5k6n by Molmil
Structure of a GH3 b-glicosidase from cow rumen metagenome in complexed with xylose
分子名称: B-GLUCOSIDASE, GLYCEROL, SULFATE ION, ...
著者Ramirez-Escudero, M, Sanz-Aparicio, J.
登録日2016-05-25
公開日2016-10-05
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structural and Functional Characterization of a Ruminal beta-Glycosidase Defines a Novel Subfamily of Glycoside Hydrolase Family 3 with Permuted Domain Topology.
J.Biol.Chem., 291, 2016
5K72
DownloadVisualize
BU of 5k72 by Molmil
IRAK4 in complex with Compound 21
分子名称: Interleukin-1 receptor-associated kinase 4, SULFATE ION, ~{N}4,~{N}4-dimethyl-~{N}1-[5-(oxan-4-yl)-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl]cyclohexane-1,4-diamine
著者Ferguson, A.D.
登録日2016-05-25
公開日2017-12-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Discovery and Optimization of Pyrrolopyrimidine Inhibitors of Interleukin-1 Receptor Associated Kinase 4 (IRAK4) for the Treatment of Mutant MYD88L265P Diffuse Large B-Cell Lymphoma.
J. Med. Chem., 60, 2017
9BV0
DownloadVisualize
BU of 9bv0 by Molmil
NMR structure of the Z0 CCHC zinc-finger of transcription repressor Bcl11A
分子名称: B-cell lymphoma/leukemia 11A, ZINC ION
著者Alexandrescu, A.T.
登録日2024-05-18
公開日2024-05-29
最終更新日2025-06-11
実験手法SOLUTION NMR
主引用文献Solution structure of the Z0 domain from transcription repressor BCL11A sheds light on the sequence properties of protein-binding zinc fingers.
Protein Sci., 34, 2025
2ICY
DownloadVisualize
BU of 2icy by Molmil
Crystal Structure of a Putative UDP-glucose Pyrophosphorylase from Arabidopsis Thaliana with Bound UDP-glucose
分子名称: DIMETHYL SULFOXIDE, Probable UTP-glucose-1-phosphate uridylyltransferase 2, URIDINE-5'-DIPHOSPHATE-GLUCOSE, ...
著者McCoy, J.G, Wesenberg, G.E, Phillips Jr, G.N, Bitto, E, Bingman, C.A, Center for Eukaryotic Structural Genomics (CESG)
登録日2006-09-13
公開日2006-10-03
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Structure and Dynamics of UDP-Glucose Pyrophosphorylase from Arabidopsis thaliana with Bound UDP-Glucose and UTP.
J.Mol.Biol., 366, 2007
9BB1
DownloadVisualize
BU of 9bb1 by Molmil
Backbone Modification in the GA Module of Protein PAB: Wild-type Sequence
分子名称: Peptostreptococcal albumin-binding protein
著者Lin, Y, Horne, W.S.
登録日2024-04-05
公開日2024-06-05
最終更新日2024-11-06
実験手法SOLUTION NMR
主引用文献Backbone Modification in a Protein Hydrophobic Core.
Chemistry, 30, 2024
8HTT
DownloadVisualize
BU of 8htt by Molmil
Cryo-EM structure of human TMEM87A, gluconate-bound
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, D-gluconic acid, Transmembrane protein 87A,EGFP, ...
著者Han, A, Kim, H.M.
登録日2022-12-21
公開日2023-12-27
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献GolpHCat (TMEM87A), a unique voltage-dependent cation channel in Golgi apparatus, contributes to Golgi-pH maintenance and hippocampus-dependent memory.
Nat Commun, 15, 2024
9BFL
DownloadVisualize
BU of 9bfl by Molmil
Solution structure of the scorpion toxin omega-Buthitoxin-Hf1a
分子名称: Buthitoxin-Hf1a
著者Rosengren, K.J, Payne, C.D.
登録日2024-04-18
公開日2024-06-05
最終更新日2024-11-20
実験手法SOLUTION NMR
主引用文献Novel Scorpion Toxin omega-Buthitoxin-Hf1a Selectively Inhibits Calcium Influx via Ca V 3.3 and Ca V 3.2 and Alleviates Allodynia in a Mouse Model of Acute Postsurgical Pain.
Int J Mol Sci, 25, 2024

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon