PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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284D	THE BI-LOOP, A NEW GENERAL FOUR-STRANDED DNA MOTIF 分子名称: BARIUM ION, DNA (5'-CD(*P*AP*TP*TP*CP*AP*TP*TP*C)-3'), SODIUM ION 著者 Salisbury, S.A, Wilson, S.E, Powell, H.R, Kennard, O, Lubini, P, Sheldrick, G.M, Escaja, N, Alazzouzi, E, Grandas, A, Pedroso, E. 登録日 1996-09-11 公開日 1997-06-11 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 The bi-loop, a new general four-stranded DNA motif. Proc.Natl.Acad.Sci.USA, 94, 1997
6KJM	Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis 分子名称: ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ... 著者 Ramachandran, R, Shukla, A, Afsar, M. 登録日 2019-07-22 公開日 2020-07-22 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure based identification of first-in-class fragment inhibitors that target the NMN pocket of M. tuberculosis NAD + -dependent DNA ligase A. J.Struct.Biol., 213, 2021
1A2E	CRYSTAL STRUCTURE OF A DOUBLE-STRANDED DNA DECAMER CONTAINING A CISPLATIN INTERSTRAND CROSS-LINK ADDUCT 分子名称: Cisplatin, DNA (5'-D(*CP*CP*TP*CP*GP*CP*TP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*AP*GP*CP*GP*AP*GP*G)-3') 著者 Coste, F, Zelwer, C. 登録日 1998-01-05 公開日 1999-04-12 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 A resolution: hydration at the platinated site. Nucleic Acids Res., 27, 1999
1N5G	NMR Structures of the Zinc Finger Domain of Human DNA Polymerase-alpha 分子名称: 38-mer of DNA polymerase alpha catalytic subunit 著者 Evanics, F, Maurmann, L, Yang, W.W, Bose, R.N. 登録日 2002-11-05 公開日 2003-11-25 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Nuclear magnetic resonance structures of the zinc finger domain of human DNA polymerase-alpha Biochim.Biophys.Acta, 1651, 2003
7VN8	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning GTCACGTGAC 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*GP*TP*CP*AP*CP*GP*TP*GP*AP*CP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... 著者 Nosaki, S, Tanokura, M, Miyakawa, T. 登録日 2021-10-10 公開日 2022-12-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN7	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning GACACGTGTC 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*GP*AP*CP*AP*CP*GP*TP*GP*TP*CP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... 著者 Nosaki, S, Tanokura, M, Miyakawa, T. 登録日 2021-10-10 公開日 2022-12-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.11 Å) 主引用文献 Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN6	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning CGCACGTGCG 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*CP*GP*CP*AP*CP*GP*TP*GP*CP*GP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... 著者 Nosaki, S, Tanokura, M, Miyakawa, T. 登録日 2021-10-10 公開日 2022-12-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN3	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning CACACGTGTG 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*GP*TP*GP*TP*GP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... 著者 Nosaki, S, Tanokura, M, Miyakawa, T. 登録日 2021-10-10 公開日 2022-12-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN4	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TCCACGTGGA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*TP*CP*CP*AP*CP*GP*TP*GP*AP*AP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... 著者 Nosaki, S, Tanokura, M, Miyakawa, T. 登録日 2021-10-10 公開日 2022-12-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN2	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning ATCACGTGAT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*AP*TP*CP*AP*CP*GP*TP*GP*AP*TP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... 著者 Nosaki, S, Tanokura, M, Miyakawa, T. 登録日 2021-10-10 公開日 2022-12-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.42 Å) 主引用文献 Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
7VN5	Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TTCACGTGAA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*TP*TP*CP*AP*CP*GP*TP*GP*AP*AP*AP*AP*A)-3'), Maltodextrin-binding protein,Protein BRASSINAZOLE-RESISTANT 1, ... 著者 Nosaki, S, Tanokura, M, Miyakawa, T. 登録日 2021-10-10 公開日 2022-12-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. Nat.Plants, 8, 2022
3II6	Structure of human Xrcc4 in complex with the tandem BRCT domains of DNA LigaseIV. 分子名称: CHLORIDE ION, DNA ligase 4, DNA repair protein XRCC4 著者 Meesala, S, Junop, M. 登録日 2009-07-31 公開日 2009-08-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural and functional interaction between the human DNA repair proteins DNA ligase IV and XRCC4 MOL.CELL.BIOL., 11, 2009
6KRH	Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis 分子名称: ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ... 著者 Ramachandran, R, Shukla, A, Afsar, M. 登録日 2019-08-21 公開日 2020-08-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity. Acta Crystallogr D Struct Biol, 77, 2021
1QHG	STRUCTURE OF DNA HELICASE MUTANT WITH ADPNP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP-DEPENDENT HELICASE PCRA, MAGNESIUM ION 著者 Soultanas, P, Dillingham, M.S, Velankar, S.S, Wigley, D.B. 登録日 1999-05-14 公開日 1999-07-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 DNA binding mediates conformational changes and metal ion coordination in the active site of PcrA helicase. J.Mol.Biol., 290, 1999
1AW4	STRUCTURAL BASIS OF DNA FOLDING AND RECOGNITION IN AMP-DNA APTAMER COMPLEX, NMR, 7 STRUCTURES 分子名称: ADENOSINE MONOPHOSPHATE, ATP-BINDING DNA APTAMER 著者 Lin, C.H, Patel, D.J. 登録日 1997-10-09 公開日 1998-04-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMP. Chem.Biol., 4, 1997
467D	The structure of a decamer forming a four-way junction 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*AP*CP*CP*GP*G)-3') 著者 Ortiz-Lombardia, M, Coll, M. 登録日 1999-04-22 公開日 2000-04-22 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 Crystal structure of a DNA Holliday junction Nat.Struct.Biol., 6, 1999
4CC5	Fragment-Based Discovery of 6 Azaindazoles As Inhibitors of Bacterial DNA Ligase 分子名称: 2-chloranyl-6-(1H-1,2,4-triazol-3-yl)pyrazine, DNA LIGASE, SULFATE ION 著者 Howard, S, Amin, N, Benowitz, A.B, Chiarparin, E, Cui, H, Deng, X, Heightman, T.D, Holmes, D.J, Hopkins, A, Huang, J, Jin, Q, Kreatsoulas, C, Martin, A.C.L, Massey, F, McCloskey, L, Mortenson, P.N, Pathuri, P, Tisi, D, Williams, P.A. 登録日 2013-10-18 公開日 2014-06-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Fragment-Based Discovery of 6-Azaindazoles as Inhibitors of Bacterial DNA Ligase. Acs Med.Chem.Lett., 4, 2013
4CC6	Fragment-Based Discovery of 6 Azaindazoles As Inhibitors of Bacterial DNA Ligase 分子名称: 2-{[2-(1H-pyrazolo[3,4-c]pyridin-3-yl)-6-(trifluoromethyl)pyridin-4-yl]amino}ethanol, DNA LIGASE, SULFATE ION 著者 Howard, S, Amin, N, Benowitz, A.B, Chiarparin, E, Cui, H, Deng, X, Heightman, T.D, Holmes, D.J, Hopkins, A, Huang, J, Jin, Q, Kreatsoulas, C, Martin, A.C.L, Massey, F, McCloskey, L, Mortenson, P.N, Pathuri, P, Tisi, D, Williams, P.A. 登録日 2013-10-18 公開日 2014-06-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Fragment-Based Discovery of 6-Azaindazoles as Inhibitors of Bacterial DNA Ligase. Acs Med.Chem.Lett., 4, 2013
1AL9	NMR STUDY OF DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN, MINIMIZED AVERAGE STRUCTURE 分子名称: 4-METHYLBENZYL-N-BIS[DAUNOMYCIN], DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') 著者 Robinson, H, Wang, A.H.-J. 登録日 1997-06-12 公開日 1997-09-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy. Biochemistry, 36, 1997
5HRT	Crystal structure of mouse autotaxin in complex with a DNA aptamer 分子名称: CALCIUM ION, CHLORIDE ION, Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, ... 著者 Kato, K, Nishimasu, H, Morita, J, Ishitani, R, Nureki, O. 登録日 2016-01-24 公開日 2016-04-06 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.997 Å) 主引用文献 Structural basis for specific inhibition of Autotaxin by a DNA aptamer Nat.Struct.Mol.Biol., 23, 2016
3QEA	Crystal structure of human exonuclease 1 Exo1 (WT) in complex with DNA (complex II) 分子名称: BARIUM ION, DNA (5'-D(P*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), ... 著者 Orans, J, McSweeney, E.A, Iyer, R.R, Hast, M.A, Hellinga, H.W, Modrich, P, Beese, L.S. 登録日 2011-01-20 公開日 2011-04-20 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structures of human exonuclease 1 DNA complexes suggest a unified mechanism for nuclease family. Cell(Cambridge,Mass.), 145, 2011
1AMD	NMR STUDY OF DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN WP-652, MINIMIZED AVERAGE STRUCTURE 分子名称: BIS-DAUNORUBICIN, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') 著者 Robinson, H, Wang, A.H.-J. 登録日 1997-06-12 公開日 1997-09-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy. Biochemistry, 36, 1997
1N37	NMR Solution Structure of the Anthracycline Respinomycin D Intercalation Complex with a Double Stranded DNA Molecule (AGACGTCT)2 分子名称: 5'-D(*AP*GP*AP*CP*GP*TP*CP*T)-3', RESPINOMYCIN D 著者 Maynard, A.J, Williams, H.E.L, Searle, M.S. 登録日 2002-10-25 公開日 2003-01-28 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 DNA recognition by the Anthracycline Antibiotic Respinomycin D: NMR Structure of the Intercalation Complex with d(AGACGTCT)2 Org.Biomol.Chem., 1, 2003
3QE9	Crystal structure of human exonuclease 1 Exo1 (D173A) in complex with DNA (complex I) 分子名称: CALCIUM ION, DNA (5'-D(*CP*GP*CP*TP*AP*GP*TP*CP*GP*AP*CP*AP*T)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*TP*AP*GP*CP*G)-3'), ... 著者 Orans, J, McSweeney, E.A, Iyer, R.R, Hast, M.A, Hellinga, H.W, Modrich, P, Beese, L.S. 登録日 2011-01-20 公開日 2011-04-20 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Structures of human exonuclease 1 DNA complexes suggest a unified mechanism for nuclease family. Cell(Cambridge,Mass.), 145, 2011
3O1M	Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase 分子名称: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase AlkB, DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), ... 著者 Yi, C, Jia, G, Hou, G, Dai, Q, Zhang, W, Zheng, G, Jian, X, Yang, C.-G, Cui, Q, He, C. 登録日 2010-07-21 公開日 2010-11-17 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase. Nature, 468, 2010

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