8JH4
| RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome | 分子名称: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. | 登録日 | 2023-05-22 | 公開日 | 2023-11-29 | 最終更新日 | 2023-12-20 | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | 主引用文献 | Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
|
|
8JH3
| RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome | 分子名称: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. | 登録日 | 2023-05-22 | 公開日 | 2023-11-29 | 最終更新日 | 2023-12-20 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
|
|
6J50
| RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome (tilted conformation) | 分子名称: | DNA (198-MER), DNA (41-MER), DNA-directed RNA polymerase subunit, ... | 著者 | Ehara, H, Kujirai, T, Fujino, Y, Shirouzu, M, Kurumizaka, H, Sekine, S. | 登録日 | 2019-01-10 | 公開日 | 2019-02-20 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (4.7 Å) | 主引用文献 | Structural insight into nucleosome transcription by RNA polymerase II with elongation factors. Science, 363, 2019
|
|
7ML2
| RNA polymerase II pre-initiation complex (PIC3) | 分子名称: | BJ4_G0004860.mRNA.1.CDS.1, BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, ... | 著者 | Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. | 登録日 | 2021-04-27 | 公開日 | 2022-02-02 | 最終更新日 | 2022-02-16 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
|
|
7ML1
| RNA polymerase II pre-initiation complex (PIC2) | 分子名称: | BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... | 著者 | Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. | 登録日 | 2021-04-27 | 公開日 | 2022-02-02 | 最終更新日 | 2022-02-16 | 実験手法 | ELECTRON MICROSCOPY (4 Å) | 主引用文献 | Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
|
|
7ML4
| RNA polymerase II initially transcribing complex (ITC) | 分子名称: | BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... | 著者 | Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. | 登録日 | 2021-04-27 | 公開日 | 2022-02-02 | 最終更新日 | 2022-03-09 | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | 主引用文献 | Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
|
|
7ML0
| RNA polymerase II pre-initiation complex (PIC1) | 分子名称: | BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... | 著者 | Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. | 登録日 | 2021-04-27 | 公開日 | 2022-02-02 | 最終更新日 | 2022-02-16 | 実験手法 | ELECTRON MICROSCOPY (3 Å) | 主引用文献 | Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
|
|
3K1F
| Crystal structure of RNA Polymerase II in complex with TFIIB | 分子名称: | DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... | 著者 | Kostrewa, D, Zeller, M.E, Armache, K.-J, Seizl, M, Leike, K, Thomm, M, Cramer, P. | 登録日 | 2009-09-27 | 公開日 | 2009-11-10 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (4.3 Å) | 主引用文献 | RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature, 462, 2009
|
|
1K83
| Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin | 分子名称: | ALPHA AMANITIN, DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE, ... | 著者 | Bushnell, D.A, Cramer, P, Kornberg, R.D. | 登録日 | 2001-10-22 | 公開日 | 2002-02-13 | 最終更新日 | 2023-08-16 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Structural Basis of Transcription: Alpha-Amanitin-RNA Polymerase II Cocrystal at 2.8 A Resolution. Proc.Natl.Acad.Sci.USA, 99, 2002
|
|
5X51
| RNA Polymerase II from Komagataella Pastoris (Type-3 crystal) | 分子名称: | DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... | 著者 | Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. | 登録日 | 2017-02-14 | 公開日 | 2017-05-17 | 実験手法 | X-RAY DIFFRACTION (6.996 Å) | 主引用文献 | Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
|
|
5X50
| RNA Polymerase II from Komagataella Pastoris (Type-2 crystal) | 分子名称: | DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... | 著者 | Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. | 登録日 | 2017-02-14 | 公開日 | 2017-05-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (4.293 Å) | 主引用文献 | Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
|
|
3J0K
| Orientation of RNA polymerase II within the human VP16-Mediator-pol II-TFIIF assembly | 分子名称: | DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, ... | 著者 | Bernecky, C, Grob, P, Ebmeier, C.C, Nogales, E, Taatjes, D.J. | 登録日 | 2011-10-04 | 公開日 | 2011-10-19 | 最終更新日 | 2018-07-18 | 実験手法 | ELECTRON MICROSCOPY (36 Å) | 主引用文献 | Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly. Plos Biol., 9, 2011
|
|
5XOG
| RNA Polymerase II elongation complex bound with Spt5 KOW5 and Elf1 | 分子名称: | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA (30-MER), DNA (39-MER), ... | 著者 | Ehara, H, Shirouzu, M, Sekine, S. | 登録日 | 2017-05-28 | 公開日 | 2017-08-16 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structure of the complete elongation complex of RNA polymerase II with basal factors Science, 357, 2017
|
|
7NVY
| RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position | 分子名称: | CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... | 著者 | Aibara, S, Schilbach, S, Cramer, P. | 登録日 | 2021-03-16 | 公開日 | 2021-05-05 | 最終更新日 | 2024-07-10 | 実験手法 | ELECTRON MICROSCOPY (7.3 Å) | 主引用文献 | Structures of mammalian RNA polymerase II pre-initiation complexes. Nature, 594, 2021
|
|
8H0W
| RNA polymerase II transcribing a chromatosome (type II) | 分子名称: | DNA (261-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Hirano, R, Ehara, H, Tomoya, K, Takizawa, Y, Sekine, S, Kurumizaka, H. | 登録日 | 2022-09-30 | 公開日 | 2022-12-07 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (4.6 Å) | 主引用文献 | Structural basis of RNA polymerase II transcription on the chromatosome containing linker histone H1. Nat Commun, 13, 2022
|
|
8H0V
| RNA polymerase II transcribing a chromatosome (type I) | 分子名称: | DNA (261-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Hirano, R, Ehara, H, Tomoya, K, Takizawa, Y, Sekine, S, Kurumizaka, H. | 登録日 | 2022-09-30 | 公開日 | 2022-12-07 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (3.8 Å) | 主引用文献 | Structural basis of RNA polymerase II transcription on the chromatosome containing linker histone H1. Nat Commun, 13, 2022
|
|
8HE5
| RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome | 分子名称: | DNA (198-MER), DNA repair protein, DNA-directed RNA polymerase subunit, ... | 著者 | Osumi, K, Kujirai, T, Ehara, H, Kinoshita, C, Saotome, M, Kagawa, W, Sekine, S, Takizawa, Y, Kurumizaka, H. | 登録日 | 2022-11-07 | 公開日 | 2023-07-05 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (6.95 Å) | 主引用文献 | Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome. J.Mol.Biol., 435, 2023
|
|
6A5L
| RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA | 分子名称: | DNA (198-MER), DNA (42-MER), DNA-directed RNA polymerase subunit, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-06-24 | 公開日 | 2018-10-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (5.6 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
|
|
6A5R
| RNA polymerase II elongation complex stalled at SHL(-2) of the nucleosome | 分子名称: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-06-25 | 公開日 | 2018-10-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (8.7 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
|
|
6A5O
| RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome | 分子名称: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-06-25 | 公開日 | 2018-10-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (9.9 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
|
|
6A5T
| RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome | 分子名称: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-06-25 | 公開日 | 2018-10-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (6.7 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
|
|
6A5U
| RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA, tilt conformation | 分子名称: | DNA (198-MER), DNA (40-MER), DNA-directed RNA polymerase subunit, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-06-25 | 公開日 | 2018-10-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (7.6 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
|
|
6A5P
| RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome | 分子名称: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-06-25 | 公開日 | 2018-10-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (7 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
|
|
6O6C
| RNA polymerase II elongation complex arrested at a CPD lesion | 分子名称: | DNA (27-MER), DNA (5'-D(P*GP*GP*AP*GP*AP*AP*GP*GP*AP*GP*CP*AP*GP*AP*GP*C)-3'), DNA-directed RNA polymerase II subunit RPB1, ... | 著者 | Lahiri, I, Leshziner, A.E. | 登録日 | 2019-03-05 | 公開日 | 2019-06-26 | 最終更新日 | 2024-03-20 | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | 主引用文献 | 3.1 angstrom structure of yeast RNA polymerase II elongation complex stalled at a cyclobutane pyrimidine dimer lesion solved using streptavidin affinity grids. J.Struct.Biol., 207, 2019
|
|
6INQ
| RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA (+1 position) | 分子名称: | DNA (198-MER), DNA (31-MER), DNA-directed RNA polymerase subunit, ... | 著者 | Kujirai, T, Ehara, H, Fujino, Y, Shirouzu, M, Sekine, S, Kurumizaka, H. | 登録日 | 2018-10-26 | 公開日 | 2019-04-03 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (6.9 Å) | 主引用文献 | Structural basis of the nucleosome transition during RNA polymerase II passage. Science, 362, 2018
|
|