PDB: 97138 件ウェブページステータス検索Chemie searchBIRD

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4UOF	Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dADP 分子名称: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R. 登録日 2014-06-03 公開日 2014-09-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.102 Å) 主引用文献 Structure of Nucleoside Diphosphate Kinase from the Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates Acta Crystallogr.,Sect.F, 79, 2014
4UOG	Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dCDP 分子名称: DEOXYCYTIDINE DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R. 登録日 2014-06-03 公開日 2014-09-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates Acta Crystallogr.,Sect.F, 79, 2014
2O3V	Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with paromamine derivative NB33 分子名称: (2S,3R,4R,5S,6R)-3-AMINO-4-({[(2S,3R,4R,5S,6R)-3-AMINO-2-{[(1R,2R,3S,4R,6S)-4,6-DIAMINO-2,3-DIHYDROXYCYCLOHEXYL]OXY}-5-HYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-4-YL]OXY}METHOXY)-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2,5-DIOL, RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3') 著者 Kondo, J, Hainrichson, M, Nudelman, I, Shallom-Shezifi, D, Baasov, T, Westhof, E. 登録日 2006-12-02 公開日 2007-11-06 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Differential Selectivity of Natural and Synthetic Aminoglycosides towards the Eukaryotic and Prokaryotic Decoding A Sites. Chembiochem, 8, 2007
6I75	Galectin-3C in complex with substituted polyfluoroaryl monothiogalactoside derivative 2 分子名称: (2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-4-[4-[2,3,5,6-tetrakis(fluoranyl)-4-oxidanyl-phenyl]-1,2,3-triazol-1-yl]oxane-3,5-diol, Galectin-3 著者 Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T. 登録日 2018-11-15 公開日 2019-01-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.171 Å) 主引用文献 Substituted polyfluoroaryl interactions with an arginine side chain in galectin-3 are governed by steric-, desolvation and electronic conjugation effects. Org. Biomol. Chem., 17, 2019
4JSU	Yeast 20S proteasome in complex with the dimerized linear mimetic of TMC-95A - yCP:3a 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Probable proteasome subunit alpha type-7, Proteasome subunit alpha type-1, ... 著者 Desvergne, A, Genin, E, Marechal, X, Gallastegui, N, Dufau, L, Richy, N, Groll, M, Vidal, J, Reboud-Ravaux, M. 登録日 2013-03-22 公開日 2013-05-01 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Dimerized linear mimics of a natural cyclopeptide (TMC-95A) are potent noncovalent inhibitors of the eukaryotic 20S proteasome J.Med.Chem., 56, 2013
6I74	Galectin-3C in complex with substituted polyfluoroaryl monothiogalactoside derivative 1 分子名称: (2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-4-[4-[2,3,4,5,6-pentakis(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-3,5-diol, Galectin-3 著者 Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T. 登録日 2018-11-15 公開日 2019-01-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (0.959 Å) 主引用文献 Substituted polyfluoroaryl interactions with an arginine side chain in galectin-3 are governed by steric-, desolvation and electronic conjugation effects. Org. Biomol. Chem., 17, 2019
6OI2	Crystal structure of human WDR5 in complex with symmetric dimethyl-L-arginine 分子名称: GLYCEROL, N3, N4-DIMETHYLARGININE, ... 著者 Lorton, B.M, Harijan, R.K, Burgos, E, Bonanno, J.B, Almo, S.C, Shechter, D. 登録日 2019-04-08 公開日 2020-04-01 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 A Binary Arginine Methylation Switch on Histone H3 Arginine 2 Regulates Its Interaction with WDR5. Biochemistry, 59, 2020
4JSQ	Yeast 20S proteasome in complex with the dimerized linear mimetic of TMC-95A - yCP:4e 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Probable proteasome subunit alpha type-7, Proteasome subunit alpha type-1, ... 著者 Desvergne, A, Genin, E, Marechal, X, Gallastegui, N, Dufau, L, Richy, N, Groll, M, Vidal, J, Reboud-Ravaux, M. 登録日 2013-03-22 公開日 2013-05-01 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Dimerized linear mimics of a natural cyclopeptide (TMC-95A) are potent noncovalent inhibitors of the eukaryotic 20S proteasome J.Med.Chem., 56, 2013
5J1T	TorsinAdeltaE-LULL1 complex, H. sapiens, bound to VHH-BS2 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ... 著者 Demircioglu, F.E, Schwartz, T.U. 登録日 2016-03-29 公開日 2016-08-17 最終更新日 2019-12-11 実験手法 X-RAY DIFFRACTION (1.402 Å) 主引用文献 Structures of TorsinA and its disease-mutant complexed with an activator reveal the molecular basis for primary dystonia. Elife, 5, 2016
5J31	Crystal structure of 14-3-3zeta in complex with an alkyne cross-linked cyclic peptide derived from ExoS 分子名称: 14-3-3 protein zeta/delta, BENZOIC ACID, Exoenzyme S 著者 Wallraven, K, Cromm, P, Bier, D, Glas, A, Grossmann, T. 登録日 2016-03-30 公開日 2016-10-19 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Constraining an Irregular Peptide Secondary Structure through Ring-Closing Alkyne Metathesis. Chembiochem, 17, 2016
6OWH	Crystal structure of MYST acetyltransferase domain in complex with inhibitor 92 分子名称: DIMETHYL SULFOXIDE, GLYCEROL, Histone acetyltransferase KAT8, ... 著者 Hermans, S.J, Chung, M.C, Parker, M.W, Thomas, T, Baell, J.B. 登録日 2019-05-09 公開日 2020-04-01 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Discovery of Acylsulfonohydrazide-Derived Inhibitors of the Lysine Acetyltransferase, KAT6A, as Potent Senescence-Inducing Anti-Cancer Agents. J.Med.Chem., 63, 2020
2O3W	Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in presence of paromomycin 分子名称: PAROMOMYCIN, RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3') 著者 Kondo, J, Hainrichson, M, Nudelman, I, Shallom-Shezifi, D, Baasov, T, Westhof, E. 登録日 2006-12-02 公開日 2007-11-06 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Differential Selectivity of Natural and Synthetic Aminoglycosides towards the Eukaryotic and Prokaryotic Decoding A Sites. Chembiochem, 8, 2007
7VRL	Solution structure of Rbfox RRM bound to a non-cognate RNA 分子名称: RNA (5'-R(*UP*GP*CP*AP*UP*AP*U)-3'), RNA binding protein fox-1 homolog 1 著者 Yang, F, Varani, G. 登録日 2021-10-23 公開日 2022-10-26 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Two distinct binding modes provide the RNA-binding protein RbFox with extraordinary sequence specificity. Nat Commun, 14, 2023
5OPA	The crystal structure of P450 CYP121 in complex with lead compound 7b 分子名称: 3-(4-fluorophenyl)-4-(imidazol-1-ylmethyl)-1-phenyl-pyrazole, DI(HYDROXYETHYL)ETHER, Mycocyclosin synthase, ... 著者 Levy, C.W. 登録日 2017-08-09 公開日 2018-03-28 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.345 Å) 主引用文献 Novel Aryl Substituted Pyrazoles as Small Molecule Inhibitors of Cytochrome P450 CYP121A1: Synthesis and Antimycobacterial Evaluation. J. Med. Chem., 60, 2017
4UDD	GR in complex with desisobutyrylciclesonide 分子名称: 1,2-ETHANEDIOL, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, DESISOBUYTYRYL CICLESONIDE, ... 著者 Edman, K, Hogner, A, Hussein, A, Bjursell, M, Aagaard, A, Backstrom, S, Bodin, C, Wissler, L, Jellesmark-Jensen, T, Cavallin, A, Karlsson, U, Nilsson, E, Lecina, D, Takahashi, R, Grebner, C, Lepisto, M, Guallar, V. 登録日 2014-12-09 公開日 2015-11-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Ligand Binding Mechanism in Steroid Receptors: From Conserved Plasticity to Differential Evolutionary Constraints. Structure, 23, 2015
6P5U	Structure of an enoyl-CoA hydratase/aldolase isolated from a lignin-degrading consortium 分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, COENZYME A, Enoyl-CoA hydratase 著者 Liberato, M.V, Squina, F.M. 登録日 2019-05-31 公開日 2020-04-08 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The structure of a prokaryotic feruloyl-CoA hydratase-lyase from a lignin-degrading consortium with high oligomerization stability under extreme pHs. Biochim Biophys Acta Proteins Proteom, 1868, 2020
4UDC	GR in complex with dexamethasone 分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, DEXAMETHASONE, GLUCOCORTICOID RECEPTOR, ... 著者 Edman, K, Hogner, A, Hussein, A, Bjursell, M, Aagaard, A, Backstrom, S, Bodin, C, Wissler, L, Jellesmark-Jensen, T, Cavallin, A, Karlsson, U, Nilsson, E, Lecina, D, Takahashi, R, Grebner, C, Lepisto, M, Guallar, V. 登録日 2014-12-09 公開日 2015-11-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Ligand Binding Mechanism in Steroid Receptors: From Conserved Plasticity to Differential Evolutionary Constraints. Structure, 23, 2015
4UDB	MR in complex with desisobutyrylciclesonide 分子名称: DESISOBUYTYRYL CICLESONIDE, DIMETHYL SULFOXIDE, GLYCEROL, ... 著者 Edman, K, Hogner, A, Hussein, A, Aagaard, A, Backstrom, S, Bodin, C, Wissler, L, JellesmarkJensen, T, Cavallin, A, Nilsson, E, Lepisto, M, Guallar, V. 登録日 2014-12-09 公開日 2015-11-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Ligand Binding Mechanism in Steroid Receptors: From Conserved Plasticity to Differential Evolutionary Constraints. Structure, 23, 2015
4UDA	MR in complex with dexamethasone 分子名称: DEXAMETHASONE, GLYCEROL, MINERALOCORTICOID RECEPTOR, ... 著者 Edman, K, Hogner, A, Hussein, A, Bjursell, M, Aagaard, A, Backstrom, S, Bodin, C, Wissler, L, Jellesmark-Jensen, T, Cavallin, A, Karlsson, U, Nilsson, E, Lecina, D, Takahashi, R, Grebner, C, Lepisto, M, Guallar, V. 登録日 2014-12-09 公開日 2015-11-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 Ligand Binding Mechanism in Steroid Receptors: From Conserved Plasticity to Differential Evolutionary Constraints. Structure, 23, 2015
4UOH	Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Lopez-Zavala, A.A, Guevara-Hernandez, E, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R. 登録日 2014-06-03 公開日 2014-09-10 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.007 Å) 主引用文献 Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates Acta Crystallogr.,Sect.F, 79, 2014
6HIV	Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome 分子名称: 12S rRNA, 50S ribosomal protein L13, putative, ... 著者 Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boerhringer, D, Schneider, A, Ban, N. 登録日 2018-08-31 公開日 2018-10-03 最終更新日 2018-11-07 実験手法 ELECTRON MICROSCOPY (7.8 Å) 主引用文献 Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Science, 362, 2018
4GR6	Crystal structure of AtRbcX2 from Arabidopsis thaliana 分子名称: 1,2-ETHANEDIOL, AtRbcX2 著者 Grudnik, P, Golik, P, Kolesinski, P, Dubin, G, Szczepaniak, A. 登録日 2012-08-24 公開日 2013-01-30 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Insights into eukaryotic Rubisco assembly - Crystal structures of RbcX chaperones from Arabidopsis thaliana. Biochim.Biophys.Acta, 1830, 2013
7E7L	The crystal structure of arylacetate decarboxylase from Olsenella scatoligenes. 分子名称: 4-HYDROXYPHENYLACETATE, Hydroxyphenylacetic acid decarboxylase 著者 Lu, Q, Duan, Y, Zhang, Y, Yuchi, Z. 登録日 2021-02-26 公開日 2021-07-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.53 Å) 主引用文献 The Glycyl Radical Enzyme Arylacetate Decarboxylase from Olsenella scatoligenes Acs Catalysis, 11, 2021
5LOX	Helical Assembly of the Anbu Complex from Pseudomonas aeruginosa 分子名称: Peptidase 著者 Fuchs, A.C.D, Albrecht, R, Martin, J, Hartmann, M.D. 登録日 2016-08-10 公開日 2017-06-07 最終更新日 2017-06-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The Architecture of the Anbu Complex Reflects an Evolutionary Intermediate at the Origin of the Proteasome System. Structure, 25, 2017
2O3Y	Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in Presence of Paromamine Derivative NB30 分子名称: RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'), SPERMINE 著者 Kondo, J, Hainrichson, M, Nudelman, I, Shallom-Shezifi, D, Baasov, T, Westhof, E. 登録日 2006-12-02 公開日 2007-11-06 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Differential Selectivity of Natural and Synthetic Aminoglycosides towards the Eukaryotic and Prokaryotic Decoding A Sites. Chembiochem, 8, 2007

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