Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8OS5
DownloadVisualize
BU of 8os5 by Molmil
Crystal structure of the Factor XII heavy chain reveals an interlocking dimer with a FnII to kringle domain interaction
分子名称: Coagulation factor XII-Mie
著者Li, C, Saleem, M, Kaira, B.G, Brown, A, Wilson, C, Philippou, H, Emsley, J.
登録日2023-04-18
公開日2024-03-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Factor XII and kininogen asymmetric assembly with gC1qR/C1QBP/P32 is governed by allostery.
Blood, 136, 2020
4V8F
DownloadVisualize
BU of 4v8f by Molmil
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2011-12-07
公開日2014-07-09
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
7QOI
DownloadVisualize
BU of 7qoi by Molmil
Unique vertex of the phicrAss001 virion
分子名称: Auxiliary capsid protein gp36, Cargo protein 1 gp45, Head fiber trimer protein gp21, ...
著者Bayfield, O.W, Shkoporov, A.N, Yutin, N, Khokhlova, E.V, Smith, J.L.R, Hawkins, D.E.D.P, Koonin, E.V, Hill, C, Antson, A.A.
登録日2021-12-24
公開日2023-03-29
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.62 Å)
主引用文献Structural atlas of a human gut crassvirus.
Nature, 617, 2023
5DGE
DownloadVisualize
BU of 5dge by Molmil
Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Melnikov, S, Mailliot, J, Shin, B.-S, Rigger, L, Yusupova, G, Micura, R, Dever, T.E, Yusupov, M.
登録日2015-08-27
公開日2017-01-25
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.45 Å)
主引用文献Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published
5DAT
DownloadVisualize
BU of 5dat by Molmil
Complex of yeast 80S ribosome with hypusine-containing eIF5A
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Melnikov, S, Mailliot, J, Shin, B.-S, Rigger, L, Yusupova, G, Micura, R, Dever, T.E, Yusupov, M.
登録日2015-08-20
公開日2016-08-31
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published
4V7Y
DownloadVisualize
BU of 4v7y by Molmil
Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.
分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Bulkley, D.P, Innis, C.A, Blaha, G, Steitz, T.A.
登録日2010-08-18
公開日2014-07-09
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Revisiting the structures of several antibiotics bound to the bacterial ribosome.
Proc.Natl.Acad.Sci.USA, 107, 2010
4V7X
DownloadVisualize
BU of 4v7x by Molmil
Structure of the Thermus thermophilus ribosome complexed with erythromycin.
分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Bulkley, D.P, Innis, C.A, Blaha, G, Steitz, T.A.
登録日2010-08-17
公開日2014-07-09
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Revisiting the structures of several antibiotics bound to the bacterial ribosome.
Proc.Natl.Acad.Sci.USA, 107, 2010
4V7W
DownloadVisualize
BU of 4v7w by Molmil
Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.
分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Bulkley, D.P, Innis, C.A, Blaha, G, Steitz, T.A.
登録日2010-08-16
公開日2014-07-09
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Revisiting the structures of several antibiotics bound to the bacterial ribosome.
Proc.Natl.Acad.Sci.USA, 107, 2010
3Q13
DownloadVisualize
BU of 3q13 by Molmil
The Structure of the Ca2+-binding, Glycosylated F-spondin Domain of F-spondin, A C2-domain Variant from Extracellular Matrix
分子名称: ACETATE ION, CALCIUM ION, SULFATE ION, ...
著者Tan, K, Lawler, J.
登録日2010-12-16
公開日2011-06-29
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The structure of the Ca2+-binding, glycosylated F-spondin domain of F-spondin - A C2-domain variant in an extracellular matrix protein.
Bmc Struct.Biol., 11, 2011
4V8E
DownloadVisualize
BU of 4v8e by Molmil
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2011-12-07
公開日2014-07-09
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
4V8D
DownloadVisualize
BU of 4v8d by Molmil
Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2011-12-07
公開日2014-07-09
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
4V6F
DownloadVisualize
BU of 4v6f by Molmil
Elongation complex of the 70S ribosome with three tRNAs and mRNA.
分子名称: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 23S RRNA, ...
著者Jenner, L.B, Yusupova, G, Yusupov, M.
登録日2009-07-09
公開日2014-07-09
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural aspects of messenger RNA reading frame maintenance by the ribosome.
Nat.Struct.Mol.Biol., 17, 2010
4V6G
DownloadVisualize
BU of 4v6g by Molmil
Initiation complex of 70S ribosome with two tRNAs and mRNA.
分子名称: 16S RRNA (E.COLI NUMBERING), 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
著者Jenner, L.B, Yusupova, G, Yusupov, M.
登録日2009-07-10
公開日2014-07-09
最終更新日2024-12-25
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural aspects of messenger RNA reading frame maintenance by the ribosome.
Nat.Struct.Mol.Biol., 17, 2010
4V8B
DownloadVisualize
BU of 4v8b by Molmil
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).
分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2011-12-06
公開日2014-07-09
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
4V7R
DownloadVisualize
BU of 4v7r by Molmil
Yeast 80S ribosome.
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Ben-Shem, A, Jenner, L, Yusupova, G, Yusupov, M.
登録日2010-07-23
公開日2014-07-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Crystal structure of the eukaryotic ribosome.
Science, 330, 2010
9O3I
DownloadVisualize
BU of 9o3i by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Syroegin, E.A, Aleksandrova, E.V, Kruglov, A.A, Paranjpe, M.N, Svetlov, M.S, Polikanov, Y.S.
登録日2025-04-07
公開日2025-06-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural insights into context-specific inhibition of bacterial translation by macrolides.
Biorxiv, 2025
4V87
DownloadVisualize
BU of 4v87 by Molmil
Crystal structure analysis of ribosomal decoding.
分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Demeshkina, N, Jenner, L, Yusupov, M, Yusupova, G.
登録日2011-09-20
公開日2014-07-09
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
4V8C
DownloadVisualize
BU of 4v8c by Molmil
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2011-12-07
公開日2014-07-09
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
4W2I
DownloadVisualize
BU of 4w2i by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
著者Polikanov, Y.S, Szal, T, Jiang, F, Gupta, P, Matsuda, R, Shiozuka, M, Steitz, T.A, Vazquez-Laslop, N, Mankin, A.S.
登録日2014-09-12
公開日2014-10-15
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Negamycin Interferes with Decoding and Translocation by Simultaneous Interaction with rRNA and tRNA.
Mol.Cell, 56, 2014
8TO0
DownloadVisualize
BU of 8to0 by Molmil
48-nm repeating structure of doublets from mouse sperm flagella
分子名称: Cilia- and flagella- associated protein 210, Cilia- and flagella-associated protein 107, Cilia- and flagella-associated protein 141, ...
著者Chen, Z, Shiozak, M, Hass, K.M, Skinner, W, Zhao, S, Guo, C, Polacco, B.J, Yu, Z, Krogan, N.J, Kaake, R.M, Vale, R.D, Agard, D.A.
登録日2023-08-02
公開日2023-11-01
最終更新日2023-11-22
実験手法ELECTRON MICROSCOPY (7.7 Å)
主引用文献De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking.
Cell, 186, 2023
8EE0
DownloadVisualize
BU of 8ee0 by Molmil
KS-AT didomain from module 2 of the 6-deoxyerythronolide B synthase in complex with antibody fragment 1B2
分子名称: 1B2 antibody heavy chain, 1B2 antibody light chain, 6-deoxyerythronolide B synthase
著者Cogan, D.P, Brodsky, K.L, Guzman, K.M, Mathews, I.I, Khosla, C.
登録日2022-09-06
公開日2023-05-31
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Discovery and Characterization of Antibody Probes of Module 2 of the 6-Deoxyerythronolide B Synthase.
Biochemistry, 62, 2023
8C3A
DownloadVisualize
BU of 8c3a by Molmil
Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
分子名称: 18S, 25S, 3-O-acetyl-2-O-(3-O-acetyl-6-deoxy-beta-D-glucopyranosyl)-6-deoxy-1-O-{[(2R,2'S,3a'R,4''S,5''R,6'S,7a'S)-5''-methyl-4''-{[(2E)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-D-glucopyranose, ...
著者Kolosova, O, Zgadzay, Y, Yusupov, M.
登録日2022-12-23
公開日2024-01-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献New crystal system to promote screening for new eukaryotic inhibitors
To Be Published
4R6C
DownloadVisualize
BU of 4r6c by Molmil
X-ray diffraction in temporally and spatially resolved biomolecular science: the X-ray crystal structure of hen egg white lysozyme cocrystallized with Ta6Br12 and then a crystal soaked in K2PtBr6
分子名称: BROMIDE ION, CHLORIDE ION, HEXABROMOPLATINATE(IV), ...
著者Helliwell, J.R.
登録日2014-08-24
公開日2015-02-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献X-ray diffraction in temporally and spatially resolved biomolecular science.
Faraday Discuss, 177, 2015
7VD5
DownloadVisualize
BU of 7vd5 by Molmil
Structure of C2S2M2-type PSII-FCPII supercomplex from diatom
分子名称: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
著者Nagao, R, Kato, K, Akita, F, Miyazaki, N, Shen, J.R.
登録日2021-09-06
公開日2022-03-02
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex
Nat Commun, 13, 2022
8CVJ
DownloadVisualize
BU of 8cvj by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Syroegin, E.A, Aleksandrova, E.V, Polikanov, Y.S.
登録日2022-05-18
公開日2022-10-19
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Insights into the ribosome function from the structures of non-arrested ribosome-nascent chain complexes.
Nat.Chem., 15, 2023

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon