PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

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1YYX	The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) at 2.8M urea 分子名称: Redesigned apo-cytochrome b562 著者 Feng, H, Vu, N, Bai, Y, Berkeley Structural Genomics Center (BSGC) 登録日 2005-02-25 公開日 2005-08-25 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Detection and structure determination of an equilibrium unfolding intermediates of Rd-apocytochrome b562: native fold with non-native hydrophobic interactions J.Mol.Biol., 343, 2004
5SUS	X-ray crystallographic structure of a covalent trimer derived from A-beta 17_36. X-ray diffractometer data set. (ORN)CVF(MEA)CED(ORN)AIIGL(ORN)V. 分子名称: 16mer A-beta peptide: ORN-CYS-VAL-PHE-MEA-CYS-GLU-ASP-ORN-ALA-ILE-ILE-GLY-LEU-ORN-VAL, CHLORIDE ION, SODIUM ION 著者 Kreutzer, A.G, Yoo, S, Nowick, J.S. 登録日 2016-08-03 公開日 2017-01-11 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.349 Å) 主引用文献 Stabilization, Assembly, and Toxicity of Trimers Derived from A beta. J.Am.Chem.Soc., 139, 2017
5SUT	X-ray crystallographic structure of a covalent trimer derived from A-beta 17_36. Synchrotron data set. (ORN)CVFFCED(ORN)AII(SAR)L(ORN)V. 分子名称: 16mer A-beta peptide: ORN-CYS-VAL-PHE-PHE-CYS-GLU-ASP-ORN-ALA-ILE-ILE-SAR-LEU-ORN-VAL, CHLORIDE ION 著者 Kreutzer, A.G, Spencer, R.K, Nowick, J.S. 登録日 2016-08-03 公開日 2017-01-11 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.902 Å) 主引用文献 Stabilization, Assembly, and Toxicity of Trimers Derived from A beta. J.Am.Chem.Soc., 139, 2017
5SUR	X-ray crystallographic structure of a covalent trimer derived from A-beta 17_36. Synchrotron data set. (ORN)CVF(MEA)CED(ORN)AIIGL(ORN)V. 分子名称: 16mer A-beta peptide: ORN-CYS-VAL-PHE-MEA-CYS-GLU-ASP-ORN-ALA-ILE-ILE-GLY-LEU-ORN-VAL, CHLORIDE ION, HEXANE-1,6-DIOL, ... 著者 Kreutzer, A.G, Yoo, S, Nowick, J.S. 登録日 2016-08-03 公開日 2017-01-11 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.801 Å) 主引用文献 Stabilization, Assembly, and Toxicity of Trimers Derived from A beta. J.Am.Chem.Soc., 139, 2017
4HB1	A DESIGNED FOUR HELIX BUNDLE PROTEIN. 分子名称: DHP1, UNKNOWN ATOM OR ION 著者 Schafmeister, C.E, Laporte, S.L, Miercke, L.J.W, Stroud, R.M. 登録日 1997-11-10 公開日 1998-03-04 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 A designed four helix bundle protein with native-like structure. Nat.Struct.Biol., 4, 1997
6I1J	Selective formation of trinuclear transition metal centers in a trimeric helical peptide 分子名称: A helical peptide containing a trinuclear Cu(II) center: HisAD, COPPER (II) ION 著者 Boyle, A.L, Pannu, N.S. 登録日 2018-10-28 公開日 2019-09-04 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Selective coordination of three transition metal ions within a coiled-coil peptide scaffold. Chem Sci, 10, 2019
4HQD	Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR265. 分子名称: Engineered Protein OR265 著者 Vorobiev, S, Su, M, Parmeggiani, F, Seetharaman, J, Huang, P.-S, Maglaqui, M, Xiao, R, Lee, D, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2012-10-25 公開日 2012-11-14 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.433 Å) 主引用文献 Crystal Structure of Engineered Protein OR265. To be Published
6ZYT	Monomeric streptavidin with a conjugated biotinylated pyrrolidine 分子名称: 5-((3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)-N-((S)-pyrrolidin-3-yl)pentanamide, SULFATE ION, Streptavidin/Rhizavidin Hybrid 著者 Nodling, A.R, Lipka-Lloyd, M, Tsai, Y.H, Rizkallah, P, Luk, L.Y.P, Jin, Y. 登録日 2020-08-03 公開日 2021-08-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The role of streptavidin and its variants in catalysis by biotinylated secondary amines. Org.Biomol.Chem., 19, 2021
1EZZ	CRYSTAL STRUCTURE OF E. COLI ASPARTATE TRANSCARBAMOYLASE P268A MUTANT IN THE T-STATE 分子名称: ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN, ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN, ZINC ION 著者 Jin, L, Stec, B, Kantrowitz, E.R. 登録日 2000-05-12 公開日 2000-11-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 A cis-proline to alanine mutant of E. coli aspartate transcarbamoylase: kinetic studies and three-dimensional crystal structures. Biochemistry, 39, 2000
6B3J	3.3 angstrom phase-plate cryo-EM structure of a biased agonist-bound human GLP-1 receptor-Gs complex 分子名称: Exendin-P5, Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... 著者 Liang, Y.L, Khoshouei, M, Glukhova, A, Furness, S.G.B, Koole, C, Zhao, P, Clydesdale, L, Thal, D.M, Radjainia, M, Danev, R, Baumeister, W, Wang, M.W, Miller, L.J, Christopoulos, A, Sexton, P.M, Wootten, D. 登録日 2017-09-22 公開日 2018-02-21 最終更新日 2020-01-15 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Phase-plate cryo-EM structure of a biased agonist-bound human GLP-1 receptor-Gs complex. Nature, 555, 2018
6IDC	Loop deletion and proline insertion mutant (deleting six residues and inserted six proline residues) 分子名称: Outer surface protein A 著者 Shiga, S, Makabe, K. 登録日 2018-09-09 公開日 2019-07-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.007 Å) 主引用文献 Domain-Swapping Design by Polyproline Rod Insertion. Chembiochem, 20, 2019
1F1B	CRYSTAL STRUCTURE OF E. COLI ASPARTATE TRANSCARBAMOYLASE P268A MUTANT IN THE R-STATE IN THE PRESENCE OF N-PHOSPHONACETYL-L-ASPARTATE 分子名称: ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN, ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN, N-(PHOSPHONACETYL)-L-ASPARTIC ACID, ... 著者 Jin, L, Stec, B, Kantrowitz, E.R. 登録日 2000-05-18 公開日 2000-11-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A cis-proline to alanine mutant of E. coli aspartate transcarbamoylase: kinetic studies and three-dimensional crystal structures. Biochemistry, 39, 2000
1BYZ	DESIGNED PEPTIDE ALPHA-1, P1 FORM 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, ... 著者 Prive, G.G, Anderson, D.H, Wesson, L, Cascio, D, Eisenberg, D. 登録日 1998-10-20 公開日 1998-10-28 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (0.9 Å) 主引用文献 Packed protein bilayers in the 0.90 A resolution structure of a designed alpha helical bundle. Protein Sci., 8, 1999
8A42	Crystal structure of the pneumococcal Substrate-binding protein AmiA in complex with an unknown peptide 分子名称: Oligopeptide-binding protein AmiA, Unknown peptide 著者 Alcorlo, M, Abdullah, M.R, Hammerschmidt, S, Hermoso, J. 登録日 2022-06-10 公開日 2023-12-20 最終更新日 2024-07-03 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Molecular and structural basis of oligopeptide recognition by the Ami transporter system in pneumococci. Plos Pathog., 20, 2024
7C0N	Crystal structure of a self-assembling galactosylated peptide homodimer 分子名称: SULFATE ION, Self-assembling galactosylated tyrosine-rich peptide, beta-D-galactopyranose 著者 He, C, Wu, S, Chi, C, Zhang, W, Ma, M, Lai, L, Dong, S. 登録日 2020-05-01 公開日 2020-10-07 最終更新日 2020-10-21 実験手法 X-RAY DIFFRACTION (1.552 Å) 主引用文献 Glycopeptide Self-Assembly Modulated by Glycan Stereochemistry through Glycan-Aromatic Interactions. J.Am.Chem.Soc., 142, 2020
4IJB	Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR288 分子名称: Engineered Protein OR288 著者 Vorobiev, S, Su, M, Bick, M.J, Seetharaman, J, Khare, S, Maglaqui, M, Xiao, R, Lee, D, Day, A, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Hunt, J, Tong, L, Northeast Structural Genomics Consortium (NESG) 登録日 2012-12-21 公開日 2013-01-16 最終更新日 2013-02-27 実験手法 X-RAY DIFFRACTION (1.739 Å) 主引用文献 Crystal Structure of Engineered Protein OR288. To be Published
6JOQ	Crystal structures of phage NrS-1 N300-dNTPs-Mg2+ complex provide molecular mechanisms for substrate specificity 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Primase 著者 Guo, H.J, Li, M.J, Wu, H, Yu, F, He, J.H. 登録日 2019-03-22 公開日 2019-06-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structures of phage NrS-1 N300-dNTPs-Mg2+complex provide molecular mechanisms for substrate specificity. Biochem.Biophys.Res.Commun., 515, 2019
4IVH	Crystal structure of QKLVFFAED nonapeptide segment from amyloid beta incorporated into a macrocyclic beta-sheet template 分子名称: SODIUM ION, TERTIARY-BUTYL ALCOHOL, cyclo[Gln-Lys-Leu-Val-Phe-Phe-Ala-Glu-Asp-(delta-linked-Orn)-Hao-Lys-Hao-(p-bromoPhe)-Thr-(delta-linked-Orn)] 著者 Pham, J.D, Chim, N, Goulding, C.W, Nowick, J.S. 登録日 2013-01-22 公開日 2013-07-31 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Structures of beta-Amyloid Peptide Oligomers J.Am.Chem.Soc., 2013
1KVG	EPO-3 beta Hairpin Peptide 分子名称: Protein: EPO-3 Receptor Agonist 著者 Skelton, N.J, Russell, S, de Sauvage, F, Cochran, A.G. 登録日 2002-01-25 公開日 2002-03-06 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 Amino Acid Determinants of beta-Hairpin Conformation in Erythropoeitin Receptor Agonist Peptides Derived from a Phage Display Library J.Mol.Biol., 316, 2002
8DT0	Scaffolding protein functional sites using deep learning 分子名称: Scaffolding protein functional sites 著者 Bera, A.K, Watson, J, Baker, D. 登録日 2022-07-24 公開日 2022-08-10 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Scaffolding protein functional sites using deep learning. Science, 377, 2022
4J7W	E3_5 DARPin L86A mutant 分子名称: DARPin_E3_5_L86A 著者 Seeger, M.A, Gruetter, M.G. 登録日 2013-02-14 公開日 2013-08-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Design, construction, and characterization of a second-generation DARPin library with reduced hydrophobicity. Protein Sci., 22, 2013
4JMG	Crystal structure of the synthetic protein in complex with pY peptide 分子名称: Clamp Ptpn11_pY580, MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 11 著者 Yasui, N, Smith, L, Koide, S. 登録日 2013-03-14 公開日 2014-04-23 最終更新日 2014-08-06 実験手法 X-RAY DIFFRACTION (1.403 Å) 主引用文献 Directed network wiring identifies a key protein interaction in embryonic stem cell differentiation. Mol.Cell, 54, 2014
4JW3	Selection of specific protein binders for pre-defined targets from an optimized library of artificial helicoidal repeat proteins (alphaRep) 分子名称: Alpha-helical artificial proteins, Neocarzinostatin 著者 Guellouz, A, Valerio-Lepiniec, M, Urvoas, A, Chevrel, A, Graille, M, Fourati-Kammoun, Z, Desmadril, M, van Tilbeurgh, H, Minard, P. 登録日 2013-03-27 公開日 2013-09-25 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Selection of Specific Protein Binders for Pre-Defined Targets from an Optimized Library of Artificial Helicoidal Repeat Proteins (alphaRep). Plos One, 8, 2013
6ICS	Loop deletion mutant (deleting four residues) 分子名称: Outer surface protein A 著者 Shiga, S, Makabe, K. 登録日 2018-09-06 公開日 2019-07-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Domain-Swapping Design by Polyproline Rod Insertion. Chembiochem, 20, 2019
8AAV	Human heavy chain ferritin with introduced Cys residues modified with C10 ligand 分子名称: 2-bromanyl-N-decyl-ethanamide, FE (III) ION, Ferritin heavy chain, ... 著者 Boehler, H, Beck, T. 登録日 2022-07-03 公開日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Assembly of chemically modified protein nanocages into 3D materials for the adsorption of uremic toxins. J Mater Chem B, 11, 2022

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