PDB: 5725 件ウェブページステータス検索Chemie searchBIRD

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3CAU	D7 symmetrized structure of unliganded GroEL at 4.2 Angstrom resolution by cryoEM 分子名称: 60 kDa chaperonin 著者 Ludtke, S.J, Baker, M.L, Chen, D.H, Song, J.L, Chuang, D, Chiu, W. 登録日 2008-02-20 公開日 2008-09-02 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 De Novo Backbone Trace of GroEL from Single Particle Electron Cryomicroscopy. Structure, 16, 2008
3C9V	C7 Symmetrized Structure of Unliganded GroEL at 4.7 Angstrom Resolution from CryoEM 分子名称: 60 kDa chaperonin 著者 Ludtke, S.J, Baker, M.L, Chen, D.H, Song, J.L, Chuang, D, Chiu, W. 登録日 2008-02-18 公開日 2008-09-02 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 De Novo Backbone Trace of GroEL from Single Particle Electron Cryomicroscopy. Structure, 16, 2008
1O6J	Tryparedoxin II from C.fasciculata solved by sulphur phasing 分子名称: TRYPAREDOXIN II 著者 Leonard, G.A, Micossi, E, Hunter, W.N. 登録日 2002-10-04 公開日 2002-11-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 De Novo Phasing of Two Crystal Forms of Tryparedoxin II Using the Anomalous Scattering from S Atoms: A Combination of Small Signal and Medium Resolution Reveals This to be a General Tool for Solving Protein Crystal Structures Acta Crystallogr.,Sect.D, 58, 2002
7XZR	Crystal structure of TNIK-AMPPNP-thiopeptide TP15 complex 分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SULFATE ION, ... 著者 Hamada, K, Vinogradov, A.A, Zhang, Y, Chang, J.S, Nishimura, H, Goto, Y, Onaka, H, Suga, H, Ogata, K, Sengoku, T. 登録日 2022-06-03 公開日 2022-10-26 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 De Novo Discovery of Thiopeptide Pseudo-natural Products Acting as Potent and Selective TNIK Kinase Inhibitors. J.Am.Chem.Soc., 144, 2022
7XZQ	Crystal structure of TNIK-thiopeptide TP1 complex 分子名称: 1,4-BUTANEDIOL, TRAF2 and NCK-interacting protein kinase, thiopeptide TP1 著者 Hamada, K, Vinogradov, A.A, Zhang, Y, Chang, J.S, Nishimura, H, Goto, Y, Onaka, H, Suga, H, Ogata, K, Sengoku, T. 登録日 2022-06-03 公開日 2022-10-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 De Novo Discovery of Thiopeptide Pseudo-natural Products Acting as Potent and Selective TNIK Kinase Inhibitors. J.Am.Chem.Soc., 144, 2022
1O81	Tryparedoxin II from C.fasciculata solved by sulphur phasing 分子名称: SULFATE ION, TRYPAREDOXIN II 著者 Leonard, G.A, Micossi, E, Hunter, W.N. 登録日 2002-11-21 公開日 2002-12-19 最終更新日 2019-10-09 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 De Novo Phasing of Two Crystal Forms of Tryparedoxin II Using the Anomalous Scattering from S Atoms: A Combination of Small Signal and Medium Resolution Reveals This to be a General Tool for Solving Protein Crystal Structures Acta Crystallogr.,Sect.D, 58, 2002
3ZFS	Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate 分子名称: CARBONMONOXIDE-(DICYANO) IRON, COENZYME F420, F420-REDUCING HYDROGENASE, ... 著者 Mills, D.J, Vitt, S, Strauss, M, Shima, S, Vonck, J. 登録日 2012-12-12 公開日 2013-03-06 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 De Novo Modeling of the F420-Reducing [Nife]-Hydrogenase from a Methanogenic Archaeon by Cryo-Electron Microscopy Elife, 2, 2013
8UJA	T33-fn10 - Designed Tetrahedral Protein Cage Using Fragment-based Hydrogen Bond Networks 分子名称: T33-fn10: engineered DrsE like sulfur reductase, T33-fn10: engineered enoyl-CoA hydratase/isomerase 著者 Meador, K, Sawaya, M.R, Yeates, T.O. 登録日 2023-10-11 公開日 2024-03-06 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (6 Å) 主引用文献 A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure, 32, 2024
7FBD	De novo design protein D53 with MBP tag 分子名称: Maltodextrin-binding protein,De novo design protein D53 著者 Bin, H. 登録日 2021-07-09 公開日 2021-12-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 A backbone-centred energy function of neural networks for protein design. Nature, 602, 2022
7FBB	De novo design protein D12 with MBP tag 分子名称: Maltodextrin-binding protein,de novo designed protein D12 著者 Bin, H. 登録日 2021-07-09 公開日 2021-12-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.307 Å) 主引用文献 A backbone-centred energy function of neural networks for protein design. Nature, 602, 2022
7FBC	De novo design protein D22 with MBP tag 分子名称: Maltodextrin-binding protein,De novo design protein D22 著者 Bin, H. 登録日 2021-07-09 公開日 2021-12-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 A backbone-centred energy function of neural networks for protein design. Nature, 602, 2022
4QKR	Crystal Structure of 6xTyr/PV2: de novo designed beta-trefoil architecture with symmetric primary structure (L22Y/L44Y/L64Y/L85Y/L108Y/L132Y, Primitive Version 2) 分子名称: DE NOVO PROTEIN 6XTYR/PV2, IMIDAZOLE 著者 Longo, L.M, Blaber, M, Tenorio, C.A. 登録日 2014-06-09 公開日 2015-01-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.746 Å) 主引用文献 A single aromatic core mutation converts a designed "primitive" protein from halophile to mesophile folding. Protein Sci., 24, 2015
7DMF	A de novo protein that rigidly extends the structure of tVHS-like domain in tepsin with a new designed domain 分子名称: Designed protein EXTD-3 著者 Xu, Y. 登録日 2020-12-03 公開日 2021-12-08 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.201 Å) 主引用文献 A backbone-centred energy function of neural networks for protein design. Nature, 602, 2022
4ETK	Crystal Structure of E6A/L130D/A155H variant of de novo designed serine hydrolase, Northeast Structural Genomics Consortium (NESG) Target OR186 分子名称: De novo designed serine hydrolase, SODIUM ION 著者 Kuzin, A, Su, M, Seetharaman, J, Kornhaber, K, Kornhaber, G, Rajagopalan, S, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2012-04-24 公開日 2012-06-13 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat.Chem.Biol., 10, 2014
8UMP	T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms 分子名称: T33-ml35-redesigned-CutA-fold, T33-ml35-redesigned-TPR-domain-fold 著者 Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O. 登録日 2023-10-18 公開日 2023-11-15 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.92 Å) 主引用文献 A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure, 32, 2024
8UF0	T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms 分子名称: T33-ml23-redesigned-CutA-fold, T33-ml23-redesigned-tandem-BMC-T-fold 著者 Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O. 登録日 2023-10-03 公開日 2023-11-15 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.02 Å) 主引用文献 A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure, 32, 2024
8UKM	T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms 分子名称: T33-ml30-redesigned-4-OT-fold, T33-ml30-redesigned-tandem-BMC-T-fold 著者 Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O. 登録日 2023-10-14 公開日 2024-03-06 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure, 32, 2024
8UN1	T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms 分子名称: T33-ml23-redesigned-CutA-fold, T33-ml23-redesigned-tandem-BMC-T-fold 著者 Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O. 登録日 2023-10-18 公開日 2024-03-06 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure, 32, 2024
8UI2	T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms 分子名称: T33-ml28-redesigned-CutA-fold, T33-ml28-redesigned-tandem-BMC-T-fold 著者 Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O. 登録日 2023-10-09 公開日 2024-03-06 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.73 Å) 主引用文献 A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure, 32, 2024
8UMR	T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms 分子名称: T33-ml35-redesigned-CutA-fold, T33-ml35-redesigned-TPR-domain-fold 著者 Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O. 登録日 2023-10-18 公開日 2024-03-06 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.42 Å) 主引用文献 A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure, 32, 2024
2HZ8	QM/MM structure refined from NMR-structure of a single chain diiron protein 分子名称: De novo designed diiron protein, ZINC ION 著者 Calhoun, J.R, Liu, W, Spiegel, K, Dal Peraro, M, Klein, M.L, Wand, A.J, DeGrado, W.F. 登録日 2006-08-08 公開日 2007-07-17 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution NMR structure of a designed metalloprotein and complementary molecular dynamics refinement. Structure, 16, 2008
2N8W	Solution NMR Structure of Designed Protein DA05R1, Northeast Structural Genomics Consortium (NESG) Target OR690 分子名称: Designed Protein DA05R1 著者 Eletsky, A, Federizon, J.F, Xu, X, Pulavarti, S, Jacobs, T.M, Kuhlman, B, Szyperski, T, Northeast Structural Genomics Consortium (NESG) 登録日 2015-10-27 公開日 2015-11-25 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Design of structurally distinct proteins using strategies inspired by evolution. Science, 352, 2016
2N8I	Solution NMR Structure of Designed Protein DA05, Northeast Structural Genomics Consortium (NESG) Target OR626 分子名称: Designed Protein DA05 著者 Xu, X, Eletsky, A, Federizon, J.F, Jacobs, T.M, Kuhlman, B, Szyperski, T, Northeast Structural Genomics Consortium (NESG) 登録日 2015-10-15 公開日 2016-01-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Design of structurally distinct proteins using strategies inspired by evolution. Science, 352, 2016
2LN3	Solution NMR Structure of DE NOVO DESIGNED PROTEIN, IF3-like fold, Northeast Structural Genomics Consortium Target OR135 (CASD target) 分子名称: DE NOVO DESIGNED PROTEIN OR135 著者 Liu, G, Koga, R, Koga, N, Xiao, R, Lee, H, Janjua, H, Kohan, E, Acton, T.B, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2011-12-15 公開日 2012-02-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Principles for designing ideal protein structures. Nature, 491, 2012
6VFK	De novo designed tetrahedral nanoparticle T33_dn10 displaying 4 copies of BG505-SOSIP trimer on the surface 分子名称: BG505-SOSIP-T33_dn10A, T33_dn10B 著者 Antanasijevic, A, Ward, A.B. 登録日 2020-01-05 公開日 2020-07-22 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.25 Å) 主引用文献 Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathog., 16, 2020

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