PDB: 47120 件ウェブページステータス検索Chemie searchBIRD

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8TH9	Structure of mammalian NEIL2 from Monodelphis domestica in complex with THF-containing DNA 分子名称: DIMETHYL SULFOXIDE, DNA (5'-D(*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3'), ... 著者 Eckenroth, B.E, Doublie, S. 登録日 2023-07-14 公開日 2023-11-01 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Structural and biochemical insights into NEIL2's preference for abasic sites. Nucleic Acids Res., 51, 2023
6EVL	Crystal structure of an unlignaded peptide-substrate-binding domain of human type II collagen prolyl 4-hydroxylase 分子名称: DIMETHYL SULFOXIDE, GLYCINE, Prolyl 4-hydroxylase subunit alpha-2, ... 著者 Murthy, A.V, Sulu, R, Koski, M.K, Wierenga, R.K. 登録日 2017-11-02 公開日 2018-09-12 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Structural enzymology binding studies of the peptide-substrate-binding domain of human collagen prolyl 4-hydroxylase (type-II): High affinity peptides have a PxGP sequence motif. Protein Sci., 27, 2018
6EVP	Crystal structure the peptide-substrate-binding domain of human type II collagen prolyl 4-hydroxylase complexed with Pro-Pro-Gly-Pro-Glu-Gly-Pro-Pro-Gly. 分子名称: DIMETHYL SULFOXIDE, PRO-PRO-GLY-PRO-GLU-GLY-PRO-PRO-GLY, Prolyl 4-hydroxylase subunit alpha-2, ... 著者 Murthy, A.V, Sulu, R, Koski, M.K, Wierenga, R.K. 登録日 2017-11-02 公開日 2018-09-12 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 Structural enzymology binding studies of the peptide-substrate-binding domain of human collagen prolyl 4-hydroxylase (type-II): High affinity peptides have a PxGP sequence motif. Protein Sci., 27, 2018
6EVW	Cryo-EM structure of GMPCPP-microtubule co-polymerised with doublecortin 分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ... 著者 Manka, S.W. 登録日 2017-11-02 公開日 2018-07-04 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 The role of tubulin-tubulin lattice contacts in the mechanism of microtubule dynamic instability. Nat. Struct. Mol. Biol., 25, 2018
4LHT	Crystal Structure of P450cin Y81F mutant, crystallized in 3 mM 1,8-cineole 分子名称: 1,3,3-TRIMETHYL-2-OXABICYCLO[2.2.2]OCTANE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Madrona, Y, Poulos, T.L. 登録日 2013-07-01 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.137 Å) 主引用文献 P450cin active site water: implications for substrate binding and solvent accessibility. Biochemistry, 52, 2013
8TT7	NMR Assignments and Structure for the Dimeric Kinesin Neck Domain 分子名称: Kinesin heavy chain isoform 5C 著者 Alexandrescu, A.T. 登録日 2023-08-12 公開日 2023-11-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution NMR assignments and structure for the dimeric kinesin neck domain. Biomol.Nmr Assign., 17, 2023
6EXH	Crystal structure of the complex Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO5 with Fe(II)/succinate/(4R)-4-hydroxy-L-lysine 分子名称: 4-HYDROXY-LYSINE, FE (III) ION, GLYCEROL, ... 著者 Isabet, T, Stura, E, Legrand, P, Zaparucha, A, Bastard, K. 登録日 2017-11-08 公開日 2018-11-14 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family. Sci Rep, 8, 2018
6EYM	Neutron crystal structure of perdeuterated galectin-3C in complex with lactose 分子名称: Galectin-3, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose 著者 Manzoni, F, Coates, L, Blakeley, M.P, Oksanen, E, Logan, D.T. 登録日 2017-11-13 公開日 2018-09-12 最終更新日 2024-05-01 実験手法 NEUTRON DIFFRACTION (1.7 Å), X-RAY DIFFRACTION 主引用文献 Elucidation of Hydrogen Bonding Patterns in Ligand-Free, Lactose- and Glycerol-Bound Galectin-3C by Neutron Crystallography to Guide Drug Design. J. Med. Chem., 61, 2018
8TAZ	Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors 分子名称: Angiotensin-converting enzyme, Spike glycoprotein 著者 Ahn, H.M, Calderon, B, Fan, X, Gao, Y, Horgan, N, Liang, B. 登録日 2023-06-28 公開日 2023-10-25 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 Structural basis of the American mink ACE2 binding by Y453F trimeric spike glycoproteins of SARS-CoV-2. J Med Virol, 95, 2023
8T22	Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors at downRBD conformation 分子名称: Angiotensin-converting enzyme, Spike glycoprotein 著者 Ahn, H.M, Calderon, B, Fan, X, Gao, Y, Horgan, N, Zhou, B, Liang, B. 登録日 2023-06-05 公開日 2023-10-25 実験手法 ELECTRON MICROSCOPY (3.83 Å) 主引用文献 Structural basis of the American mink ACE2 binding by Y453F trimeric spike glycoproteins of SARS-CoV-2. J Med Virol, 95, 2023
6EUO	Crystal structure of APO Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO5 分子名称: D-MALATE, FE (III) ION, GLYCEROL, ... 著者 Isabet, T, Stura, E, Legrand, P, Zaparucha, A, Bastard, K. 登録日 2017-10-30 公開日 2018-11-14 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family. Sci Rep, 8, 2018
7O9U	Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus 分子名称: Cytochrome c552, HEME C 著者 Britikov, V.V, Britikova, E.V, Altukhov, D.A, Timofeev, V.I, Dergousova, N.I, Rakitina, T.V, Tikhonova, T.V, Usanov, S.A, Popov, V.O, Bocharov, E.V. 登録日 2021-04-17 公開日 2021-05-05 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Unusual Cytochrome c 552 from Thioalkalivibrio paradoxus : Solution NMR Structure and Interaction with Thiocyanate Dehydrogenase. Int J Mol Sci, 23, 2022
8T20	Cryo-EM structure of mink variant Y453F trimeric spike protein bound to two mink ACE2 receptors 分子名称: Angiotensin-converting enzyme, Spike glycoprotein 著者 Ahn, H.M, Calderon, B, Fan, X, Gao, Y, Horgan, N, Zhou, B, Liang, B. 登録日 2023-06-05 公開日 2023-10-25 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 Structural basis of the American mink ACE2 binding by Y453F trimeric spike glycoproteins of SARS-CoV-2. J Med Virol, 95, 2023
4KXY	Human transketolase in complex with ThDP analogue (R)-2-(1,2-dihydroxyethyl)-3-deaza-ThDP 分子名称: 1,2-ETHANEDIOL, 2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-[(1R)-1,2-dihydroxyethyl]-3-methylthiophen-2-yl}ethyl trihydrogen diphosphate, CALCIUM ION, ... 著者 Neumann, P, Luedtke, S, Erixon, K.M, Leeper, F, Kluger, R, Ficner, R, Tittmann, K. 登録日 2013-05-28 公開日 2013-08-21 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.26 Å) 主引用文献 Sub-angstrom-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate. Nat Chem, 5, 2013
4LLF	Crystal structure of Cucumber Necrosis Virus 分子名称: CALCIUM ION, Capsid protein, ZINC ION 著者 Smith, T. 登録日 2013-07-09 公開日 2013-10-30 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.8891 Å) 主引用文献 Atomic structure of cucumber necrosis virus and the role of the capsid in vector transmission. J.Virol., 87, 2013
8TWI	Cryo-EM structure of the PP2A:B55-FAM122A complex, PP2Ac body 分子名称: FE (III) ION, PPP2R1A-PPP2R2A-interacting phosphatase regulator 1, Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform, ... 著者 Fuller, J.R, Padi, S.K.R, Peti, W, Page, R. 登録日 2023-08-21 公開日 2023-11-01 最終更新日 2024-01-17 実験手法 ELECTRON MICROSCOPY (2.69 Å) 主引用文献 Cryo-EM structures of PP2A:B55-FAM122A and PP2A:B55-ARPP19. Nature, 625, 2024
6EVX	Cryo-EM structure of GDP.Pi-microtubule rapidly co-polymerised with doublecortin 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Manka, S.W. 登録日 2017-11-03 公開日 2018-07-11 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 The role of tubulin-tubulin lattice contacts in the mechanism of microtubule dynamic instability. Nat. Struct. Mol. Biol., 25, 2018
8FHW	Cryo-EM structure of Cryptococcus neoformans trehalose-6-phosphate synthase homotetramer in complex with uridine diphosphate and glucose-6-phosphate 分子名称: 6-O-phosphono-alpha-D-glucopyranose, Alpha,alpha-trehalose-phosphate synthase (UDP-forming), URIDINE-5'-DIPHOSPHATE 著者 Washington, E.J, Brennan, R.G. 登録日 2022-12-15 公開日 2023-12-20 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structures of trehalose-6-phosphate synthase, Tps1, from the fungal pathogen Cryptococcus neoformans : a target for novel antifungals. Biorxiv, 2024
8SZZ	CryoEM Structure of Computationally Designed Nanocage O32-ZL4 分子名称: O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION 著者 Weidle, C, Borst, A. 登録日 2023-05-30 公開日 2023-11-01 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
6F04	N-acetylglucosamine-2-epimerase 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, N-acetylglucosamine-2-epimerase 著者 Halsoer, M.J, Rothweiler, U. 登録日 2017-11-17 公開日 2018-09-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.699 Å) 主引用文献 The crystal structure of the N-acetylglucosamine 2-epimerase from Nostoc sp. KVJ10 reveals the true dimer. Acta Crystallogr D Struct Biol, 75, 2019
7OQZ	Cryo-EM structure of human TMEM45A 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Transmembrane protein 45A 著者 Grieben, M, Pike, A.C.W, Evans, A, Shrestha, L, Venkaya, S, Mukhopadhyay, S.M.M, Moreira, T, Chalk, R, MacLean, E.M, Marsden, B.D, Burgess-Brown, N.A, Bountra, C, Carpenter, E.P. 登録日 2021-06-04 公開日 2021-06-16 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.27 Å) 主引用文献 CryoEM structure of human TMEM45A To Be Published
8TWE	Cryo-EM structure of the PP2A:B55-FAM122A complex, B55 body 分子名称: PPP2R1A-PPP2R2A-interacting phosphatase regulator 1, Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform, Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform, ... 著者 Fuller, J.R, Padi, S.K.R, Peti, W, Page, R. 登録日 2023-08-21 公開日 2023-11-01 最終更新日 2024-01-17 実験手法 ELECTRON MICROSCOPY (2.55 Å) 主引用文献 Cryo-EM structures of PP2A:B55-FAM122A and PP2A:B55-ARPP19. Nature, 625, 2024
6F07	CBF3 Core Complex 分子名称: Centromere DNA-binding protein complex CBF3 subunit B, Suppressor of kinetochore protein 1, ZINC ION 著者 Leber, V, Singleton, M.R. 登録日 2017-11-17 公開日 2017-12-13 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural basis for assembly of the CBF3 kinetochore complex. EMBO J., 37, 2018
8TTB	Cryo-EM structure of the PP2A:B55-ARPP19 complex 分子名称: FE (III) ION, Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform, Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform, ... 著者 Fuller, J.R, Padi, S.K.R, Peti, W, Page, R. 登録日 2023-08-13 公開日 2023-10-25 最終更新日 2024-01-17 実験手法 ELECTRON MICROSCOPY (2.77 Å) 主引用文献 Cryo-EM structures of PP2A:B55-FAM122A and PP2A:B55-ARPP19. Nature, 625, 2024
8TFI	tRNA 2'-phosphotransferase (Tpt1) from Pyrococcus horikoshii 分子名称: CHLORIDE ION, Probable RNA 2'-phosphotransferase 著者 Jacewicz, A, Dantuluri, S, Shuman, S. 登録日 2023-07-11 公開日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Structural basis for Tpt1-catalyzed 2'-PO 4 transfer from RNA and NADP(H) to NAD. Proc.Natl.Acad.Sci.USA, 120, 2023

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