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8J3N
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Solution NMR structure of purS subunit of phosphoribosylformylglycinamidine synthase enzyme from Staphylococcus aureus
分子名称: Phosphoribosylformylglycinamidine synthase subunit PurS
著者Wahab, A, Ashraf, F, Choudhary, M.I.
登録日2023-04-17
公開日2023-05-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR structure of purS subunit of phosphoribosylformylglycinamidine synthase enzyme from Staphylococcus aureus
To Be Published
8JYZ
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BU of 8jyz by Molmil
Cryo-EM structure of RCD-1 pore from Neurospora crassa
分子名称: Gasdermin-like protein rcd-1-1, Gasdermin-like protein rcd-1-2
著者Hou, Y.J, Sun, Q, Li, Y, Ding, J.
登録日2023-07-04
公開日2024-05-01
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.63 Å)
主引用文献Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms.
Science, 384, 2024
8JYW
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Cryo-EM structure of the gasdermin pore from Trichoplax adhaerens
分子名称: Gasdermin pore forming domain-containing protein
著者Hou, Y.J, Sun, Q, Zeng, H, Ding, J.
登録日2023-07-04
公開日2024-05-01
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms.
Science, 384, 2024
8JYX
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Crystal structure of the gasdermin-like protein RCD-1-1 from Neurospora crassa
分子名称: Maltodextrin-binding protein,Gasdermin-like protein rcd-1-1, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Li, Y, Hou, Y.J, Ding, J.
登録日2023-07-04
公開日2024-05-08
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms.
Science, 384, 2024
6RR1
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Structure of 10% reduced KpDyP
分子名称: GLYCEROL, Iron-dependent peroxidase, MAGNESIUM ION, ...
著者Pfanzagl, V, Beale, J, Hofbauer, S.
登録日2019-05-16
公開日2020-09-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献X-ray-induced photoreduction of heme metal centers rapidly induces active-site perturbations in a protein-independent manner.
J.Biol.Chem., 295, 2020
7BKD
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Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (heterodislfide reductase core and mobile arm in conformational state 1, composite structure)
分子名称: CoB--CoM heterodisulfide reductase iron-sulfur subunit A, CoB--CoM heterodisulfide reductase subunit B, CoB--CoM heterodisulfide reductase subunit C, ...
著者Pfeil-Gardiner, O, Watanabe, T, Shima, S, Murphy, B.J.
登録日2021-01-15
公開日2021-09-29
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
Science, 373, 2021
7BKE
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Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (heterodisulfide reductase core and mobile arm in conformational state 2, composite structure)
分子名称: CoB--CoM heterodisulfide reductase iron-sulfur subunit A, CoB--CoM heterodisulfide reductase subunit B, CoB--CoM heterodisulfide reductase subunit C, ...
著者Pfeil-Gardiner, O, Watanabe, T, Shima, S, Murphy, B.J.
登録日2021-01-15
公開日2021-09-29
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
Science, 373, 2021
7BKB
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Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (hexameric, composite structure)
分子名称: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CoB--CoM heterodisulfide reductase iron-sulfur subunit A, CoB--CoM heterodisulfide reductase subunit B, ...
著者Pfeil-Gardiner, O, Watanabe, T, Shima, S, Murphy, B.J.
登録日2021-01-15
公開日2021-09-29
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
Science, 373, 2021
5DU3
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Active form of human C1-inhibitor
分子名称: Plasma protease C1 inhibitor
著者Pannu, N.S, Dijk, M, Holkers, J, Voskamp, P, Giannetti, B.M, Waterreus, W.J, van Veen, H.A.
登録日2015-09-18
公開日2016-08-31
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献How Dextran Sulfate Affects C1-inhibitor Activity: A Model for Polysaccharide Potentiation.
Structure, 24, 2016
7BKC
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Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (dimeric, composite structure)
分子名称: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CoB--CoM heterodisulfide reductase iron-sulfur subunit A, CoB--CoM heterodisulfide reductase subunit B, ...
著者Pfeil-Gardiner, O, Watanabe, T, Shima, S, Murphy, B.J.
登録日2021-01-15
公開日2021-09-29
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
Science, 373, 2021
4ZU4
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BU of 4zu4 by Molmil
X-ray structure of the 3,4-ketoisomerase domain of FdtD from Shewanella denitrificans
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, PHOSPHATE ION, ...
著者Thoden, J.B, Vinogradov, E, Gilbert, M, Salinger, A.J, Holden, H.M.
登録日2015-05-15
公開日2015-07-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Bacterial Sugar 3,4-Ketoisomerases: Structural Insight into Product Stereochemistry.
Biochemistry, 54, 2015
5ABN
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BU of 5abn by Molmil
CRYSTAL STRUCTURE ANALYSIS OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII. MUTANT VPi. MUTATED RESIDUES D69S, T70D, S86E, D146T, Q202L, H232E, Q239R AND S301K.
分子名称: CALCIUM ION, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Medrano, F.J, Romero, A.
登録日2015-08-07
公開日2015-11-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.194 Å)
主引用文献Improving the Ph-Stability of Versatile Peroxidase by Comparative Structural Analysis with a Naturally-Stable Manganese Peroxidase.
Plos One, 10, 2015
4ZWN
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Crystal Structure of a Soluble Variant of the Monoglyceride Lipase from Saccharomyces Cerevisiae
分子名称: Monoglyceride lipase, NITRATE ION, SODIUM ION, ...
著者Aschauer, P, Rengachari, S, Gruber, K, Oberer, M.
登録日2015-05-19
公開日2016-04-27
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.491 Å)
主引用文献Crystal structure of the Saccharomyces cerevisiae monoglyceride lipase Yju3p.
Biochim.Biophys.Acta, 1861, 2016
5ABO
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CRYSTAL STRUCTURE ANALYSIS OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII. MUTANT VPi-br. MUTATED RESIDUES T2K, D69S, T70D, S86E, A131K, D146T, Q202L, Q219K, H232E, Q239R, L288R, S301K, A308R, A309K AND A314R.
分子名称: CALCIUM ION, PROTOPORPHYRIN IX CONTAINING FE, VERSATILE PEROXIDASE VPL2
著者Medrano, F.J, Romero, A.
登録日2015-08-07
公開日2015-11-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.095 Å)
主引用文献Improving the Ph-Stability of Versatile Peroxidase by Comparative Structural Analysis with a Naturally-Stable Manganese Peroxidase.
Plos One, 10, 2015
5A4K
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Crystal structure of the R139W variant of human NAD(P)H:quinone oxidoreductase
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FLAVIN-ADENINE DINUCLEOTIDE, NAD(P)H DEHYDROGENASE [QUINONE] 1
著者Lienhart, W.D, Strandback, E, Gudipati, V, Uhl, M.K, Rantase, D.M, Zangger, K, Gruber, K, Macheroux, P.
登録日2015-06-10
公開日2016-06-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.093 Å)
主引用文献Catalytic competence, structure and stability of the cancer-associated R139W variant of the human NAD(P)H:quinone oxidoreductase 1 (NQO1).
FEBS J., 284, 2017
8JJS
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Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP10343
分子名称: GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, MAA-ILE-SAR-SAR-7T2-SAR-IAE-LEU-MEA-MLE-7TK, ...
著者Irie, M, Fukami, T.A, Tanada, M, Ohta, A, Torizawa, T.
登録日2023-05-31
公開日2023-07-26
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.534 Å)
主引用文献Development of Orally Bioavailable Peptides Targeting an Intracellular Protein: From a Hit to a Clinical KRAS Inhibitor.
J.Am.Chem.Soc., 145, 2023
6RR6
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Structure of 100% reduced KpDyP
分子名称: GLYCEROL, Iron-dependent peroxidase, MAGNESIUM ION, ...
著者Pfanzagl, V, Beale, J, Hofbauer, S.
登録日2019-05-17
公開日2020-09-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献X-ray-induced photoreduction of heme metal centers rapidly induces active-site perturbations in a protein-independent manner.
J.Biol.Chem., 295, 2020
6RQY
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BU of 6rqy by Molmil
Structure of % reduced KpDyP
分子名称: GLYCEROL, Iron-dependent peroxidase, MAGNESIUM ION, ...
著者Pfanzagl, V, Beale, J, Hofbauer, S.
登録日2019-05-16
公開日2020-09-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献X-ray-induced photoreduction of heme metal centers rapidly induces active-site perturbations in a protein-independent manner.
J.Biol.Chem., 295, 2020
5ONP
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Alzheimer's Amyloid-Beta Peptide Fragment 1-40 in Complex with Cd-substituted Thermolysin
分子名称: Amyloid-beta A4 protein, CADMIUM ION, CALCIUM ION, ...
著者Leite, J.P, Gales, L.
登録日2017-08-04
公開日2018-08-29
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Alzheimer's A beta1-40peptide degradation by thermolysin: evidence of inhibition by a C-terminal A beta product.
FEBS Lett., 593, 2019
6TP8
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Substrate protein interactions in the limbus region of the catalytic site of Candida antarctica Lipase B
分子名称: 2,3-di(butanoyloxy)propyl butanoate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DIETHYL PHOSPHONATE, ...
著者Cianci, M, Silvestrini, L.
登録日2019-12-12
公開日2020-05-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Principles of lipid-enzyme interactions in the limbus region of the catalytic site of Candida antarctica Lipase B.
Int.J.Biol.Macromol., 158, 2020
8OYU
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Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, H6 nanobody, ...
著者Weckener, M, Naismith, J.H, Owens, R.J.
登録日2023-05-05
公開日2024-05-15
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural and functional characterization of nanobodies that neutralize Omicron variants of SARS-CoV-2.
Open Biology, 14, 2024
5D6B
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Human fumarase (wild type)
分子名称: Fumarate hydratase, mitochondrial
著者Pereira de Padua, R.A, Nonato, M.C.
登録日2015-08-11
公開日2016-08-24
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of recombinant human fumarase.
Acta Crystallogr F Struct Biol Commun, 70, 2014
8PE9
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Complex between DDR1 DS-like domain and PRTH-101 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Liu, J, Chiang, H, Xiong, W, Laurent, V, Griffiths, S.C, Duelfer, J, Deng, H, Sun, X, Yin, Y.W, Li, W, Audoly, L.P, An, Z, Schuerpf, T, Li, R, Zhang, N.
登録日2023-06-13
公開日2023-06-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.152 Å)
主引用文献A highly selective humanized DDR1 mAb reverses immune exclusion by disrupting collagen fiber alignment in breast cancer.
J Immunother Cancer, 11, 2023
1DDJ
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CRYSTAL STRUCTURE OF HUMAN PLASMINOGEN CATALYTIC DOMAIN
分子名称: PLASMINOGEN
著者Wang, X, Terzyan, S, Tang, J, Loy, J, Lin, X, Zhang, X.
登録日1999-11-10
公開日2000-02-18
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Human plasminogen catalytic domain undergoes an unusual conformational change upon activation.
J.Mol.Biol., 295, 2000
5DQL
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Crystal Structure of 2-vinyl glyoxylate modified isocitrate lyase from Mycobacterium tuberculosis
分子名称: 4-hydroxy-2-oxobutanoic acid, Isocitrate lyase 1, MAGNESIUM ION
著者Huang, H.-L, Meek, T.D.
登録日2015-09-14
公開日2016-09-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.782 Å)
主引用文献Mechanism-based inactivator of isocitrate lyases 1 and 2 from Mycobacterium tuberculosis.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017

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