PDB: 238582 件ウェブページステータス検索Chemie searchBIRD

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3COR	Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with N-acetylgalactosamine at 3.1 A resolution 分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, L(+)-TARTARIC ACID, Peptidoglycan recognition protein 著者 Sharma, P, Vikram, G, Singh, N, Sharma, S, Kaur, P, Singh, T.P. 登録日 2008-03-29 公開日 2008-04-08 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with N-acetylgalactosamine at 3.1 A resolution To be Published
8ZYX	Neuraminidase of A/Switzerland/9715293/2013 H3N2 in complex with CAV-F6-R54S Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Wang, X, Ge, J, Li, X. 登録日 2024-06-18 公開日 2025-07-02 実験手法 ELECTRON MICROSCOPY (2.33 Å) 主引用文献 Neuraminidase of A/Switzerland/9715293/2013 H3N2 in complex with CAV-F6-R54S Fab To Be Published
3SIB	Crystal structure of URE3-binding protein, wild-type 分子名称: CALCIUM ION, SODIUM ION, URE3-BP sequence specific DNA binding protein 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2011-06-17 公開日 2011-06-29 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of URE3-binding protein To be Published
5CXY	Structure of a Glycosyltransferase in Complex with Inhibitor 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Volkers, G, Strynadka, N.C.J. 登録日 2015-07-29 公開日 2016-09-07 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 To be published. To be published
4V7S	Crystal structure of the E. coli ribosome bound to telithromycin. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Dunkle, J.A, Xiong, L, Mankin, A.S, Cate, J.H.D. 登録日 2010-08-05 公開日 2014-07-09 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.2547 Å) 主引用文献 Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action. Proc.Natl.Acad.Sci.USA, 107, 2010
4V9S	Crystal structure of antibiotic GE82832 bound to 70S ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ... 著者 Bulkley, D.P, Brandi, L, Polikanov, Y.S, Fabbretti, A, O'Connor, M, Gualerzi, C.O, Steitz, T.A. 登録日 2013-12-05 公開日 2014-07-09 最終更新日 2025-03-26 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation. Cell Rep, 6, 2014
4W87	Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from metagenomic library, in complex with a xyloglucan oligosaccharide 分子名称: MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose 著者 Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T. 登録日 2014-08-22 公開日 2015-03-11 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family. Biochemistry, 54, 2015
9B37	Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map. 分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. 登録日 2024-03-18 公開日 2024-05-22 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (6.66 Å) 主引用文献 Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
4W90	Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MAGNESIUM ION, U1 small nuclear ribonucleoprotein A, ... 著者 Jones, C.P, Ferre-D'Amare, A.R. 登録日 2014-08-26 公開日 2014-10-15 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.118 Å) 主引用文献 Crystal structure of a c-di-AMP riboswitch reveals an internally pseudo-dimeric RNA. Embo J., 33, 2014
3D87	Crystal structure of Interleukin-23 分子名称: Interleukin-12 subunit p40, Interleukin-23 subunit p19, PHOSPHATE ION, ... 著者 Beyer, B.M, Ingram, R, Ramanathan, L, Reichert, P, Le, H, Madison, V. 登録日 2008-05-22 公開日 2008-09-02 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structures of the pro-inflammatory cytokine interleukin-23 and its complex with a high-affinity neutralizing antibody J.Mol.Biol., 382, 2008
8AHO	Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with cyanamide analogue 31 分子名称: CHLORIDE ION, DIMETHYL SULFOXIDE, NITRATE ION, ... 著者 de Munnik, M, Lang, P.A, Brem, J, Schofield, C.J. 登録日 2022-07-22 公開日 2023-08-02 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 High-throughput screen with the l,d-transpeptidase Ldt Mt2 of Mycobacterium tuberculosis reveals novel classes of covalently reacting inhibitors. Chem Sci, 14, 2023
7S4C	Crystal Structure of Inhibitor-bound Galactokinase 分子名称: 2-({(4R)-4-(2-chlorophenyl)-2-[(6-fluoro-1,3-benzoxazol-2-yl)amino]-6-methyl-1,4-dihydropyrimidine-5-carbonyl}amino)pyridine-4-carboxylic acid, Galactokinase, PHOSPHATE ION, ... 著者 Whitby, F.G. 登録日 2021-09-08 公開日 2021-09-29 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure-Based Optimization of Small Molecule Human Galactokinase Inhibitors. J.Med.Chem., 64, 2021
9B38	Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ... 著者 Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. 登録日 2024-03-18 公開日 2024-05-22 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
9B39	Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ... 著者 Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. 登録日 2024-03-18 公開日 2024-05-22 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3.84 Å) 主引用文献 Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
9B36	Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map. 分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. 登録日 2024-03-18 公開日 2024-05-22 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (4.29 Å) 主引用文献 Kainate receptor channel opening and gating mechanism. Nature, 630, 2024
9B1R	Functional implication of the homotrimeric multidomain vacuolar sorting receptor 1 from Arabidopsis thaliana 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Vacuolar-sorting receptor 1 著者 Park, H, Youn, B, Park, D.J, Puthanveettil, S.V, Kang, C. 登録日 2024-03-13 公開日 2024-05-15 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Functional implication of the homotrimeric multidomain vacuolar sorting receptor 1 (VSR1) from Arabidopsis thaliana. Sci Rep, 14, 2024
8AQ6	NanoLuc luciferase with bound furimamide in surface allosteric site 分子名称: CHLORIDE ION, GLYCEROL, N-(3-Benzyl-5-phenylpyrazin-2-yl)-2-(furan-2-yl)acetamide, ... 著者 Nemergut, M, Marek, M. 登録日 2022-08-11 公開日 2023-08-23 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Illuminating the mechanism and allosteric behavior of NanoLuc luciferase. Nat Commun, 14, 2023
8AQI	NanoLuc luciferase with bound coelenteramide in surface allosteric site 分子名称: CHLORIDE ION, N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE, NanoLuc luciferase, ... 著者 Nemergut, M, Marek, M. 登録日 2022-08-12 公開日 2023-08-23 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Illuminating the mechanism and allosteric behavior of NanoLuc luciferase. Nat Commun, 14, 2023
8AFE	Cryo-EM structure of crescentin filaments (stutter mutant, C1 symmetry and small box) 分子名称: Crescentin, Crescentin-specific megabody MB13 著者 Liu, Y, Lowe, J. 登録日 2022-07-17 公開日 2023-08-16 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin. Proc.Natl.Acad.Sci.USA, 121, 2024
8AIA	Cryo-EM structure of crescentin filaments (wildtype, C1 symmetry and large box) 分子名称: Crescentin, Crescentin-specific megabody MB13 著者 Liu, Y, Lowe, J. 登録日 2022-07-26 公開日 2023-08-16 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (5.1 Å) 主引用文献 Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin. Proc.Natl.Acad.Sci.USA, 121, 2024
8AKF	Human Sirt6 in complex with ADP-ribose and fragment 3-aminobenzamide 分子名称: 1,2-ETHANEDIOL, 3-aminobenzamide, CHLORIDE ION, ... 著者 You, W, Steegborn, C. 登録日 2022-07-29 公開日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Development of novel Sirtuin 6 inhibitors and activators based on a protein crystallography-based fragment screen To Be Published
8ANB	14-3-3 sigma sirtuin-1 phospho-peptide complex 分子名称: 14-3-3 protein sigma, CHLORIDE ION, MAGNESIUM ION, ... 著者 Weyand, M, Steegborn, C, Debbert, L. 登録日 2022-08-05 公開日 2023-08-16 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 14-3-3 sigma sirtuin-1 phospho-peptide complex To Be Published
8AIX	Cryo-EM structure of crescentin filaments (wildtype, C2 symmetry and large box) 分子名称: Crescentin, Crescentin-specific megabody MB13 著者 Liu, Y, Lowe, J. 登録日 2022-07-27 公開日 2023-08-16 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin. Proc.Natl.Acad.Sci.USA, 121, 2024
3SIA	Crystal structure of URE3-binding protein, (D127A,N129A) mutant, iodide phased 分子名称: CALCIUM ION, CHLORIDE ION, IODIDE ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID), Skubak, P. 登録日 2011-06-17 公開日 2011-06-29 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Crystal structure of URE3-binding protein To be Published
8AK6	Human Sirt6 in complex with ADP-ribose and fragment sulfamethoxazole 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, NAD-dependent protein deacetylase sirtuin-6, ... 著者 You, W, Steegborn, C. 登録日 2022-07-29 公開日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Development of novel Sirtuin 6 inhibitors and activators based on a protein crystallography-based fragment screen To Be Published

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