PDB: 1573 件ウェブページステータス検索Chemie searchBIRD

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2NR2	The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins 分子名称: Ubiquitin 著者 Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M. 登録日 2006-11-01 公開日 2007-05-08 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins J.Biomol.Nmr, 37, 2007
2OJR	Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag 分子名称: TERBIUM(III) ION, Ubiquitin 著者 Silvaggi, N.R, Allen, K.N. 登録日 2007-01-13 公開日 2007-06-12 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination. J.Am.Chem.Soc., 129, 2007
2O6V	Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin 著者 Eddins, M.J, Wolberger, C. 登録日 2006-12-08 公開日 2007-02-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH J.Mol.Biol., 367, 2007
2N7K	Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 分子名称: NEDD8, Protein KHNYN 著者 Santonico, E, Nepravishta, R, Mattioni, A, Valentini, E, Mandaliti, W, Procopio, R, Iannuccelli, M, Castagnoli, L, Polo, S, Paci, M, Cesareni, G. 登録日 2015-09-14 公開日 2016-09-14 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 To be Published
2OOB	crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin 分子名称: E3 ubiquitin-protein ligase CBL-B, Ubiquitin 著者 Kozlov, G, Gehring, K. 登録日 2007-01-25 公開日 2007-02-06 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b. Mol.Cell, 27, 2007
2PE9	NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements 分子名称: Ubiquitin 著者 Ryabov, Y, Fushman, D. 登録日 2007-04-02 公開日 2007-07-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2MWS	Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1 分子名称: DNA damage-inducible protein 1, Ubiquitin 著者 Fushman, D, Nowicka, U, Walker, O. 登録日 2014-11-23 公開日 2015-03-25 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin. Structure, 23, 2015
2PEA	NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements 分子名称: Ubiquitin 著者 Ryabov, Y, Fushman, D. 登録日 2007-04-02 公開日 2007-07-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2NBD	Solution structure of V26A mutant of Ubiquitin at pH 6.0 分子名称: entity 著者 Surana, P, Das, R. 登録日 2016-02-04 公開日 2016-05-18 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2NBU	Solution structure of the Rad23 ubiquitin-like (UBL) domain 分子名称: UV excision repair protein RAD23 著者 Chen, X, Walters, K.J. 登録日 2016-03-12 公開日 2016-07-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome. Structure, 24, 2016
2NBE	Solution structure of V26A mutant of Ubiquitin at pH 2.0 分子名称: entity 著者 Surana, P, Das, R. 登録日 2016-02-04 公開日 2016-05-18 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2L3Z	Proton-Detected 4D DREAM Solid-State NMR Structure of Ubiquitin 分子名称: Ubiquitin 著者 Huber, M, Hiller, S, Schanda, P, Ernst, M, Bockmann, A, Verel, R, Meier, B.H. 登録日 2010-09-27 公開日 2011-02-16 最終更新日 2024-05-01 実験手法 SOLID-STATE NMR 主引用文献 A Proton-Detected 4D Solid-State NMR Experiment for Protein Structure Determination. Chemphyschem, 12, 2011
2LD9	Backbone Structure of Ubiquitin determined using Backbone amide NOEs and Backbone N-H and N-C RDCs 分子名称: Ubiquitin 著者 Kumar, D, Hosur, R. 登録日 2011-05-18 公開日 2011-06-08 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 AUTOBA: Automation of Backbone Assignment from HN(C)N Suite of Experiments To be Published
2MI8	Solution structure of lysine-free (K0) ubiquitin 分子名称: Ubiquitin 著者 Huang, T, Li, J.R, Byrd, A.R. 登録日 2013-12-09 公開日 2014-04-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of lysine-free (K0) ubiquitin. Protein Sci., 23, 2014
2N2K	Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand 分子名称: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, ubiquitin 著者 Liu, Z, Gong, Z, Tang, C. 登録日 2015-05-10 公開日 2015-07-08 最終更新日 2015-09-23 実験手法 SOLUTION NMR 主引用文献 Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition. Elife, 4, 2015
2MBO	K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl 分子名称: Ubiquitin 著者 Castaneda, C.A, Fushman, D. 登録日 2013-08-02 公開日 2013-09-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains. Structure, 21, 2013
2MBQ	K11-linked Diubiquitin average solution structure at pH 6.8, 150 mM NaCl 分子名称: Ubiquitin 著者 Castaneda, C.A, Fushman, D. 登録日 2013-08-03 公開日 2013-09-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains. Structure, 21, 2013
2MJB	Solution nmr structure of ubiquitin refined against dipolar couplings in 4 media 分子名称: Ubiquitin-60S ribosomal protein L40 著者 Maltsev, A, Grishaev, A, Roche, J, Zasloff, M, Bax, A. 登録日 2014-01-02 公開日 2014-03-26 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Improved cross validation of a static ubiquitin structure derived from high precision residual dipolar couplings measured in a drug-based liquid crystalline phase. J.Am.Chem.Soc., 136, 2014
8CMR	Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin 分子名称: OTU domain-containing protein, Polyubiquitin-B 著者 Uthoff, M, Hermanns, T, Boll, V, Hofmann, K, Baumann, U. 登録日 2023-02-21 公開日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis. Nat Commun, 14, 2023
8T48	The N4BP1 CUE-like domain in complex with linear di-Ubiquitin 分子名称: Di-Ubiquitin, GLYCEROL, LITHIUM ION, ... 著者 Schubert, A.F, Harris, S.F. 登録日 2023-06-08 公開日 2024-03-13 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 N4BP1 coordinates ubiquitin-dependent crosstalk within the I kappa B kinase family to limit Toll-like receptor signaling and inflammation. Immunity, 57, 2024
4W9I	pVHL:EloB:EloC in complex with (2S,4R)-1-((2S,4R)-1-acetyl-4-hydroxypyrrolidine-2-carbonyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 10) 分子名称: (4R)-1-acetyl-4-hydroxy-L-prolyl-(4R)-4-hydroxy-N-[4-(4-methyl-1,3-thiazol-5-yl)benzyl]-L-prolinamide, Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2, ... 著者 Gadd, M.S, Soares, P, Galdeano, C, van Molle, I, Ciulli, A. 登録日 2014-08-27 公開日 2014-09-10 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure-Guided Design and Optimization of Small Molecules Targeting the Protein-Protein Interaction between the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase and the Hypoxia Inducible Factor (HIF) Alpha Subunit with in Vitro Nanomolar Affinities. J.Med.Chem., 57, 2014
3TBL	Structure of Mono-ubiquitinated PCNA: Implications for DNA Polymerase Switching and Okazaki Fragment Maturation 分子名称: Proliferating cell nuclear antigen, Ubiquitin 著者 Zhang, Z, Lee, M, Lee, E, Zhang, S. 登録日 2011-08-07 公開日 2012-05-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.903 Å) 主引用文献 Structure of monoubiquitinated PCNA: Implications for DNA polymerase switching and Okazaki fragment maturation. Cell Cycle, 11, 2012
2QHO	Crystal structure of the UBA domain from EDD ubiquitin ligase in complex with ubiquitin 分子名称: E3 ubiquitin-protein ligase EDD1, Ubiquitin 著者 Kozlov, G, Gehring, K. 登録日 2007-07-02 公開日 2007-09-25 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural basis of ubiquitin recognition by the ubiquitin-associated (UBA) domain of the ubiquitin ligase EDD. J.Biol.Chem., 282, 2007
3L0W	Structure of split monoubiquitinated PCNA with ubiquitin in position two 分子名称: Monoubiquitinated Proliferating cell nuclear antigen, Proliferating cell nuclear antigen 著者 Freudenthal, B.D, Gakhar, L, Ramaswamy, S, Washington, M.T. 登録日 2009-12-10 公開日 2010-03-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange. Nat.Struct.Mol.Biol., 17, 2010
3L10	Structure of split monoubiquitinated PCNA with ubiquitin in position one 分子名称: Monoubiquitinated Proliferating cell nuclear antigen, Proliferating cell nuclear antigen 著者 Freudenthal, B.D, Gakhar, L, Ramaswamy, S, Washington, M.T. 登録日 2009-12-10 公開日 2010-03-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange. Nat.Struct.Mol.Biol., 17, 2010

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