PDB: 8717 件ウェブページステータス検索Chemie searchBIRD

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6R7Q	Structure of XBP1u-paused ribosome nascent chain complex with Sec61. 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shanmuganathan, V, Cheng, J, Braunger, K, Berninghausen, O, Beatrix, B, Beckmann, R. 登録日 2019-03-29 公開日 2019-07-10 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural and mutational analysis of the ribosome-arresting human XBP1u. Elife, 8, 2019
6R5Q	Structure of XBP1u-paused ribosome nascent chain complex (post-state) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shanmuganathan, V, Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2019-03-25 公開日 2019-07-10 最終更新日 2019-10-30 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural and mutational analysis of the ribosome-arresting human XBP1u. Elife, 8, 2019
6R6P	Structure of XBP1u-paused ribosome nascent chain complex (rotated state) 分子名称: 18S rRNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shanmuganathan, V, Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2019-03-27 公開日 2019-07-10 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural and mutational analysis of the ribosome-arresting human XBP1u. Elife, 8, 2019
8BTK	Structure of the TRAP complex with the Sec translocon and a translating ribosome 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Jaskolowski, M, Jomaa, A, Gamerdinger, M, Shrestha, S, Leibundgut, M, Deuerling, E, Ban, N. 登録日 2022-11-29 公開日 2023-05-24 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Molecular basis of the TRAP complex function in ER protein biogenesis. Nat.Struct.Mol.Biol., 30, 2023
6SWA	Mus musculus brain neocortex ribosome 60S bound to Ebp1 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Kraushar, M.L, Sprink, T. 登録日 2019-09-20 公開日 2020-09-30 最終更新日 2021-02-17 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Protein Synthesis in the Developing Neocortex at Near-Atomic Resolution Reveals Ebp1-Mediated Neuronal Proteostasis at the 60S Tunnel Exit. Mol.Cell, 81, 2021
8SCB	Terminating ribosome with SRI-41315 分子名称: (2S,4aS)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3H,4aH)-dione, 18S_rRNA, 28S_rRNA, ... 著者 Yip, M.C.J, Coelho, J.P.L, Oltion, K, Tauton, J, Shao, S. 登録日 2023-04-05 公開日 2023-12-27 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 The eRF1 degrader SRI-41315 acts as a molecular glue at the ribosomal decoding center. Nat.Chem.Biol., 20, 2024
4MDE	Structure of bacterial polynucleotide kinase product complex bound to GDP and DNA 分子名称: DNA (5'-D(P*CP*CP*TP*GP*T)-3'), GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Shuman, S, Das, U, Wang, L.K, Smith, P, Jacewicz, A. 登録日 2013-08-22 公開日 2013-11-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition. Nucleic Acids Res., 42, 2014
4MDF	Structure of bacterial polynucleotide kinase Michaelis complex bound to GTP and DNA 分子名称: CITRIC ACID, DNA (5'-D(*CP*CP*TP*GP*T)-3'), GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Shuman, S, Das, U, Wang, L.K, Smith, P, Jacewicz, A. 登録日 2013-08-22 公開日 2013-11-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.727 Å) 主引用文献 Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition. Nucleic Acids Res., 42, 2014
7OW7	EIF6-bound large subunit of the human ribosome 分子名称: 28S rRNA, 5.8S ribosomal RNA, 5S rRNA, ... 著者 Faille, A, Warren, A.J. 登録日 2021-06-16 公開日 2022-10-05 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Structure of human EIF6-bound large ribosomal subunit To Be Published
4WA6	Structure of yeast SAGA DUBm with Sgf73 N59D mutant at 2.36 angstroms resolution 分子名称: SAGA-associated factor 11, SAGA-associated factor 73, Transcription and mRNA export factor SUS1, ... 著者 Wolberger, C, Yan, M. 登録日 2014-08-28 公開日 2015-03-04 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Structure of yeast SAGA DUBm with Sgf73 N59D mutant at 2.36 angstroms resolution To Be Published
7OYD	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Leesch, F, Lorenzo-Orts, L, Grishkovskaya, I, Kandolf, S, Belacic, K, Meinhart, A, Haselbach, D, Pauli, A. 登録日 2021-06-24 公開日 2022-07-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.3 Å) 主引用文献 A molecular network of conserved factors keeps ribosomes dormant in the egg. Nature, 613, 2023
8R3V	Escherichia coli paused disome complex (non-rotated disome interface) 分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... 著者 Fluegel, T, Schacherl, M. 登録日 2023-11-10 公開日 2024-03-06 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.28 Å) 主引用文献 Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
7WTW	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3 分子名称: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R. 登録日 2022-02-05 公開日 2022-10-19 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 The nucleoplasmic phase of pre-40S formation prior to nuclear export. Nucleic Acids Res., 50, 2022
7QEP	Cryo-EM structure of the ribosome from Encephalitozoon cuniculi 分子名称: 18S ribosomal RNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ... 著者 Nicholson, D, Ranson, N.A, Melnikov, S.V. 登録日 2021-12-03 公開日 2022-02-09 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Adaptation to genome decay in the structure of the smallest eukaryotic ribosome Nat Commun, 13, 2022
4ZUX	SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome 分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Morgan, M, Wolberger, C. 登録日 2015-05-17 公開日 2016-02-24 最終更新日 2016-03-09 実験手法 X-RAY DIFFRACTION (3.82 Å) 主引用文献 Structural basis for histone H2B deubiquitination by the SAGA DUB module. Science, 351, 2016
6W0L	Henipavirus W protein interacts with 14-3-3 to modulate host gene expression 分子名称: 14-3-3 protein sigma, CALCIUM ION, Phosphorylated W peptide 著者 Edwards, M, Hoad, M, Tsimbalyuk, S, Menicucci, A, Messaoudi, I, Forwood, J, Basler, C. 登録日 2020-03-01 公開日 2020-04-22 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Henipavirus W Proteins Interact with 14-3-3 To Modulate Host Gene Expression. J.Virol., 94, 2020
8RJB	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Lewis, A.J.O, Hegde, R.S. 登録日 2023-12-20 公開日 2024-01-24 最終更新日 2024-08-07 実験手法 ELECTRON MICROSCOPY (2.69243 Å) 主引用文献 Structural analysis of the dynamic ribosome-translocon complex. Elife, 13, 2024
8RCL	Escherichia coli paused disome complex (Non-rotated disome interface class 1) 分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... 著者 Fluegel, T, Schacherl, M. 登録日 2023-12-06 公開日 2024-03-13 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.49 Å) 主引用文献 Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8RCM	Escherichia coli paused disome complex (Non-rotated disome interface class 2) 分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... 著者 Fluegel, T, Schacherl, M. 登録日 2023-12-06 公開日 2024-03-06 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.59 Å) 主引用文献 Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8RCT	Escherichia coli paused disome complex (Rotated disome interface class 2) 分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... 著者 Fluegel, T, Schacherl, M. 登録日 2023-12-07 公開日 2024-03-06 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (5.32 Å) 主引用文献 Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8RCS	Escherichia coli paused disome complex (Rotated disome interface class 1) 分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... 著者 Fluegel, T, Schacherl, M. 登録日 2023-12-07 公開日 2024-03-06 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (4.46 Å) 主引用文献 Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
7WTT	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1) 分子名称: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R. 登録日 2022-02-05 公開日 2022-10-19 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The nucleoplasmic phase of pre-40S formation prior to nuclear export. Nucleic Acids Res., 50, 2022
5XQM	NMR solution structure of SMO1, Sumo homologue in Caenorhabditis elegans 分子名称: Small ubiquitin-related modifier 著者 Gowda, C.M, Surana, P, Das, R. 登録日 2017-06-07 公開日 2017-11-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural and functional analysis of SMO-1, the SUMO homolog in Caenorhabditis elegans PLoS ONE, 12, 2017
7WTV	Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2 分子名称: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R. 登録日 2022-02-05 公開日 2022-10-19 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 The nucleoplasmic phase of pre-40S formation prior to nuclear export. Nucleic Acids Res., 50, 2022
8XXL	Cryo-EM structure of the human 40S ribosome with PDCD4 分子名称: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Ye, X, Huang, Z, Li, Y, Wang, M, Cheng, J. 登録日 2024-01-18 公開日 2024-05-01 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Human tumor suppressor PDCD4 directly interacts with ribosomes to repress translation. Cell Res., 34, 2024

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