PDB: 61302 件ウェブページステータス検索Chemie searchBIRD

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7WK9	SARS-CoV-2 Omicron open state spike protein in complex with S3H3 Fab 分子名称: Heavy chain of S3H3 Fab, Light chain of S3H3 Fab, Spike glycoprotein 著者 Hong, Q, Cong, Y. 登録日 2022-01-08 公開日 2022-02-02 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (3.48 Å) 主引用文献 Molecular basis of receptor binding and antibody neutralization of Omicron. Nature, 604, 2022
4Z9D	EcPltA 分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Pertussis toxin-like subunit ArtA, SODIUM ION 著者 Littler, D.R, Johnson, M.D, Summers, R.J, Schembri, M.A, Rossjohn, J, Beddoe, T. 登録日 2015-04-10 公開日 2016-10-12 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure and function analyses of a pertussis-like toxin from pathogenic Escherichia coli reveal a distinct mechanism of inhibition of trimeric G proteins. J. Biol. Chem., 2017
7LKA	Crystal structure of SARS-CoV-2 RBD-targeting antibody COV107-23 分子名称: ACETATE ION, COV107-23 heavy chain, COV107-23 light chain 著者 Yuan, M, Zhu, X, Wilson, I.A, Wu, N.C. 登録日 2021-02-02 公開日 2021-02-10 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.981 Å) 主引用文献 Sequence signatures of two public antibody clonotypes that bind SARS-CoV-2 receptor binding domain. Nat Commun, 12, 2021
7LK9	Crystal structure of SARS-CoV-2 RBD-targeting antibody COV107-23 HC + COVD21-C8 LC 分子名称: COV107-23 heavy chain, COVD21-C8 light chain 著者 Yuan, M, Zhu, X, Wilson, I.A, Wu, N.C. 登録日 2021-02-01 公開日 2021-02-17 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Sequence signatures of two public antibody clonotypes that bind SARS-CoV-2 receptor binding domain. Nat Commun, 12, 2021
6PD1	PntC-AEPT: fusion protein of phosphonate-specific cytidylyltransferase and 2-aminoethylphosphonate (AEP) transaminase from Treponema denticola 分子名称: 1,2-ETHANEDIOL, GLYCEROL, MAGNESIUM ION, ... 著者 Suits, M.D.L, Whiteside, J. 登録日 2019-06-18 公開日 2019-08-07 最終更新日 2024-12-25 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 The predominance of nucleotidyl activation in bacterial phosphonate biosynthesis. Nat Commun, 10, 2019
3LP9	Crystal structure of LS24, A Seed Albumin from Lathyrus sativus 分子名称: CALCIUM ION, CHLORIDE ION, LS-24, ... 著者 Gaur, V, Qureshi, I.A, Singh, A, Chanana, V, Salunke, D.M. 登録日 2010-02-05 公開日 2010-02-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure and functional insights of hemopexin fold protein from grass pea Plant Physiol., 152, 2010
5NG2	Structure of RIP2K(D146N) with bound Staurosporine 分子名称: PHOSPHATE ION, Receptor-interacting serine/threonine-protein kinase 2, STAUROSPORINE 著者 Pellegrini, E, Cusack, S. 登録日 2017-03-16 公開日 2017-06-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structures of the inactive and active states of RIP2 kinase inform on the mechanism of activation. PLoS ONE, 12, 2017
6S50	scdSav(SARK)mv2 - Engineering Single-Chain Dimeric Streptavidin as Host for Artificial Metalloenzymes 分子名称: GLYCEROL, SULFATE ION, Streptavidin, ... 著者 Rebelein, J.G. 登録日 2019-06-29 公開日 2019-09-25 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Breaking Symmetry: Engineering Single-Chain Dimeric Streptavidin as Host for Artificial Metalloenzymes. J.Am.Chem.Soc., 141, 2019
4R0W	Vvtgvta, an amyloid forming segment from alpha synuclein, residues 70-76 分子名称: Alpha-synuclein 著者 Ivanova, M.I, Eisenberg, D.S, Sawaya, M.R. 登録日 2014-08-01 公開日 2014-12-17 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure-based design of functional amyloid materials. J.Am.Chem.Soc., 136, 2014
7ZU6	Polyoxidovanadate interaction with proteins: crystal structure of lysozyme bound to tetra-vanadate ion (structure 1) 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CYCLO-TETRAMETAVANADATE, Lysozyme, ... 著者 Tito, G, Merlino, A, Ferraro, G. 登録日 2022-05-11 公開日 2023-05-24 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.183 Å) 主引用文献 Stabilization and Binding of [V 4 O 12 ] 4- and Unprecedented [V 20 O 54 (NO 3 )] n- to Lysozyme upon Loss of Ligands and Oxidation of the Potential Drug V IV O(acetylacetonato) 2. Angew.Chem.Int.Ed.Engl., 62, 2023
5NHK	Structure of Ferric uptake regulator from francisella tularensis with Iron 分子名称: FE (III) ION, Ferric uptake regulation protein, ZINC ION 著者 Perard, J, Arnaud, L, Carpentier, P, Michaud-Soret, I, Cavazza, C. 登録日 2017-03-21 公開日 2018-05-16 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural and functional studies of the metalloregulator Fur identify a promoter-binding mechanism and its role inFrancisella tularensisvirulence. Commun Biol, 1, 2018
3E9U	Crystal structure of Calx CBD2 domain 分子名称: Na/Ca exchange protein 著者 Wu, M, Zheng, L. 登録日 2008-08-23 公開日 2009-01-27 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of CBD2 from the Drosophila Na(+)/Ca(2+) exchanger: diversity of Ca(2+) regulation and its alternative splicing modification. J.Mol.Biol., 387, 2009
5X4F	Solution Structure of the N-terminal Domain of TDP-43 分子名称: TAR DNA-binding protein 43 著者 Jiang, L.-L, Xue, W, Hu, H.-Y. 登録日 2017-02-13 公開日 2017-08-16 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The N-terminal dimerization is required for TDP-43 splicing activity. Sci Rep, 7, 2017
6PDK	The Structure of Smlt3025, an immunity protein of the Stenotrophomonas maltophilia type IV secretion system 分子名称: BROMIDE ION, CHLORIDE ION, Uncharacterized protein 著者 Matsuyama, B.Y, Farah, C.S. 登録日 2019-06-19 公開日 2019-09-04 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The opportunistic pathogen Stenotrophomonas maltophilia utilizes a type IV secretion system for interbacterial killing. Plos Pathog., 15, 2019
6V12	Empty AAV8 particles 分子名称: Capsid protein 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-19 公開日 2019-12-11 最終更新日 2025-05-14 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6PFM	Crystal structure of GDC-0927 bound to estrogen receptor alpha 分子名称: (2S)-2-(4-{2-[3-(fluoromethyl)azetidin-1-yl]ethoxy}phenyl)-3-(3-hydroxyphenyl)-4-methyl-2H-1-benzopyran-6-ol, Estrogen receptor 著者 Kiefer, J.R, Vinogradova, M, Liang, J, Zhang, B, Wang, X, Zbieg, J.R, Labadie, S.S, Li, J, Ray, N.C, Ortwine, D. 登録日 2019-06-21 公開日 2019-07-17 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.84 Å) 主引用文献 Discovery of a C-8 hydroxychromene as a potent degrader of estrogen receptor alpha with improved rat oral exposure over GDC-0927. Bioorg.Med.Chem.Lett., 29, 2019
6IK7	Crystal structure of tomato beta-galactosidase (TBG) 4 in complex with beta-1,3-galactobiose 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ... 著者 Matsuyama, K, Nakae, S, Igarashi, K, Tada, T, Ishimaru, M. 登録日 2018-10-15 公開日 2018-11-28 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Substrate-recognition mechanism of tomato beta-galactosidase 4 using X-ray crystallography and docking simulation. Planta, 252, 2020
6UPX	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Oh, J, Wang, D. 登録日 2019-10-18 公開日 2020-06-10 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions. Proc.Natl.Acad.Sci.USA, 117, 2020
7WK8	SARS-CoV-2 Omicron spike protein SD1 in complex with S3H3 Fab 分子名称: Heavy chain of S3H3 Fab, Light chain of S3H3 Fab, Spike glycoprotein 著者 Hong, Q, Cong, Y. 登録日 2022-01-08 公開日 2022-01-26 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.61 Å) 主引用文献 Molecular basis of receptor binding and antibody neutralization of Omicron. Nature, 604, 2022
6ILH	Crystal Structure of human lysyl-tRNA synthetase L350H mutant 分子名称: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE, Lysine-tRNA ligase 著者 Hei, Z, Liu, Z, Wang, J, Fang, P. 登録日 2018-10-18 公開日 2019-02-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 Retractile lysyl-tRNA synthetase-AIMP2 assembly in the human multi-aminoacyl-tRNA synthetase complex. J. Biol. Chem., 294, 2019
5UII	structure of DHFR with bound buformin and NADP 分子名称: CALCIUM ION, Dihydrofolate reductase, N-butyl-N'-(diaminomethylidene)guanidine, ... 著者 Pedersen, L.C, London, R.E. 登録日 2017-01-14 公開日 2018-01-31 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.351 Å) 主引用文献 A Structural Basis for Biguanide Activity. Biochemistry, 56, 2017
5H35	Crystal structures of the TRIC trimeric intracellular cation channel orthologue from Sulfolobus solfataricus 分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Fab Heavy Chain, Fab Light Chain, ... 著者 Kasuya, G, Hiraizumi, M, Hattori, M, Nureki, O. 登録日 2016-10-20 公開日 2017-01-11 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.642 Å) 主引用文献 Crystal structures of the TRIC trimeric intracellular cation channel orthologues Cell Res., 26, 2016
6M09	The ligand-free structure of the chloroplast protein At3g03890 分子名称: AT3G03890 protein 著者 Wang, J, Liu, L. 登録日 2020-02-20 公開日 2020-12-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.101 Å) 主引用文献 The Arabidopsis locus AT3G03890 encodes a dimeric beta-barrel protein implicated in heme degradation. Biochem.J., 2020
7VW5	Crystal structures of alphavirus nonstructural protein 4 (nsP4) reveal an intrinsically dynamic RNA-dependent RNA polymerase fold 分子名称: MAGNESIUM ION, RNA-directed RNA polymerase nsP4 著者 Tan, Y.B, Luo, D. 登録日 2021-11-09 公開日 2022-02-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of alphavirus nonstructural protein 4 (nsP4) reveal an intrinsically dynamic RNA-dependent RNA polymerase fold. Nucleic Acids Res., 50, 2022
4FCJ	Crystal structure of the NTF2-like domain of human G3BP1 分子名称: GLYCEROL, Ras GTPase-activating protein-binding protein 1 著者 Vognsen, T, Kristensen, O. 登録日 2012-05-25 公開日 2013-06-05 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Crystal Structures of the Human G3BP1 NTF2-Like Domain Visualize FxFG Nup Repeat Specificity. Plos One, 8, 2013

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