PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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2LL9	Solution structure of a DNA containing a thymime-thymine mismatch 分子名称: DNA (5'-D(*CP*GP*TP*CP*GP*TP*AP*GP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*CP*TP*TP*CP*GP*AP*CP*G)-3') 著者 Jourdan, M, Granzhan, A, Guillot, R, Dumy, P, Teulade-Fichou, M. 登録日 2011-11-03 公開日 2012-09-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Double threading through DNA: NMR structural study of a bis-naphthalene macrocycle bound to a thymine-thymine mismatch. Nucleic Acids Res., 40, 2012
2LGM	Structure of DNA Containing an Aristolactam II-dA Lesion 分子名称: DNA (5'-D(*CP*GP*TP*AP*CP*AP*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3'), [1,3]benzodioxolo[6,5,4-cd]benzo[f]indol-5(6H)-one 著者 Lukin, M, Zaliznyak, T, Johnson, F, de los Santos, C. 登録日 2011-07-28 公開日 2011-11-30 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure and stability of DNA containing an aristolactam II-dA lesion: implications for the NER recognition of bulky adducts. Nucleic Acids Res., 40, 2012
2N4M	Base-displaced intercalated structure of the N-(2'deoxyguanosin-8-yl)-3-aminobenzanthrone DNA adduct 分子名称: DNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*CP*GP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*CP*(4E9)P*TP*GP*TP*TP*TP*GP*T)-3') 著者 Politica, D.A, Stone, M.P, Malik, C.K, Basu, A.K. 登録日 2015-06-23 公開日 2016-07-06 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Base-Displaced Intercalated Structure of the N-(2'-Deoxyguanosin-8-yl)-3-aminobenzanthrone DNA Adduct. Chem.Res.Toxicol., 28, 2015
2LSF	Structure and Stability of Duplex DNA Containing (5'S) 5',8-Cyclo-2'-Deoxyadenosine: An Oxidative Lesion Repair by NER 分子名称: DNA (5'-D(*CP*GP*TP*AP*CP*(02I)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3') 著者 Zaliznyak, T, de los Santos, C, Lukin, M. 登録日 2012-04-30 公開日 2012-09-12 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure and Stability of Duplex DNA Containing (5'S)-5',8-Cyclo-2'-deoxyadenosine: An Oxidatively Generated Lesion Repaired by NER. Chem.Res.Toxicol., 25, 2012
2O4Y	Solution structure of a DNA duplex containing the universal base 5-nitroindole-3-carboxamide 分子名称: DNA (5'-D(*CP*GP*TP*TP*GP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*CP*(NCX)P*AP*CP*G)-3') 著者 Gallego, J, Loakes, D. 登録日 2006-12-05 公開日 2007-04-24 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure and dynamics of DNA duplexes containing the universal base analogues 5-nitroindole and 5-nitroindole 3-carboxamide. Nucleic Acids Res., 35, 2007
2KE8	NMR solution structure of metal-modified DNA 分子名称: DNA (5'-D(*TP*TP*AP*AP*TP*TP*TP*(D33)P*(D33)P*(D33)P*AP*AP*AP*TP*TP*AP*A)-3'), SILVER ION 著者 Johannsen, S, Duepre, N, Boehme, D, Mueller, J, Sigel, R.K.O. 登録日 2009-01-27 公開日 2010-02-09 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of a DNA double helix with consecutive metal-mediated base pairs. Nat.Chem., 2, 2010
2LWO	Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion 分子名称: DNA (5'-D(*G*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3') 著者 Zalianyak, T, de los Santos, C, Lukin, M, Attaluri, S, Johnson, F. 登録日 2012-08-03 公開日 2013-02-20 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion Chem.Res.Toxicol., 25, 2012
2LWN	Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion 分子名称: DNA (5'-D(*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3') 著者 Zalianyak, T, de los Santos, C, Lukin, M, Attaluri, S, Johnson, F. 登録日 2012-08-03 公開日 2013-02-20 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion Chem.Res.Toxicol., 25, 2012
2LWM	Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion 分子名称: DNA (5'-D(*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3') 著者 Zalianyak, T, de los Santos, C, Lukin, M, Attaluri, S, Johnson, F. 登録日 2012-08-03 公開日 2013-02-20 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion Chem.Res.Toxicol., 25, 2012
2LSZ	NMR structure of duplex DNA containing the alpha-OH-PdG dA base pair: A mutagenic intermediate of acrolein 分子名称: DNA (5'-D(*CP*GP*TP*AP*CP*(63H)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3') 著者 Zaliznyak, T, de los Santos, C, Lukin, M, El-khateeb, M, Bonala, R, Johnson, F. 登録日 2012-05-09 公開日 2012-06-13 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 NMR structure of duplex DNA containing the alpha-OH-PdG.dA base pair: a mutagenic intermediate of acrolein. Biopolymers, 93, 2010
2LT0	NMR structure of duplex DNA containing the beta-OH-PdG dA base pair: A mutagenic intermediate of acrolein 分子名称: DNA (5'-D(*CP*GP*TP*AP*CP*(63G)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3') 著者 Zaliznyak, T, de los Santos, C, Lukin, M, El-khateeb, M, Bonala, R, Johnson, F. 登録日 2012-05-09 公開日 2012-06-13 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 NMR structure of duplex DNA containing the alpha-OH-PdG.dA base pair: a mutagenic intermediate of acrolein. Biopolymers, 93, 2010
2NEO	SOLUTION NMR STRUCTURE OF A TWO-BASE DNA BULGE COMPLEXED WITH AN ENEDIYNE CLEAVING ANALOG, 11 STRUCTURES 分子名称: DNA (5'-D(*CP*CP*CP*GP*AP*TP*GP*CP*PGE*GP*CP*AP*AP*TP*TP*CP*GP*GP*G)-3'), SPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]-3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL-OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A-TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN-2-ONE]] 著者 Stassinopoulos, A, Ji, J, Gao, X, Goldberg, I.H. 登録日 1997-06-19 公開日 1998-01-28 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a two-base DNA bulge complexed with an enediyne cleaving analog. Science, 272, 1996
2KXE	N-terminal domain of the DP1 subunit of an archaeal D-family DNA polymerase 分子名称: DNA polymerase II small subunit 著者 Yamasaki, K, Matsui, I. 登録日 2010-04-30 公開日 2010-08-18 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of the N-terminal domain of the archaeal D-family DNA polymerase small subunit reveals evolutionary relationship to eukaryotic B-family polymerases Febs Lett., 584, 2010
7QBY	Refined structure of the T193A mutant in the C-terminal domain of DNAJB6b 分子名称: Isoform B of DnaJ homolog subfamily B member 6 著者 Karamanos, T.K, Cawood, E.E. 登録日 2021-11-21 公開日 2022-03-30 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Microsecond Backbone Motions Modulate the Oligomerization of the DNAJB6 Chaperone. Angew.Chem.Int.Ed.Engl., 61, 2022
6U3R	Solution NMR structure of the DNAJB6b deltaST variant (Aligned on the J domain) 分子名称: DnaJ homolog subfamily B member 6,DnaJ homolog subfamily B member 6 著者 Karamanos, T.K, Clore, G.M. 登録日 2019-08-22 公開日 2019-10-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Unraveling the structure and dynamics of the human DNAJB6b chaperone by NMR reveals insights into Hsp40-mediated proteostasis. Proc.Natl.Acad.Sci.USA, 116, 2019
6U3S	Solution NMR structure of the DNAJB6b deltaST variant (Aligned on the CTD domain) 分子名称: DnaJ homolog subfamily B member 6 著者 Karamanos, T.K, Clore, G.M. 登録日 2019-08-22 公開日 2019-10-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Unraveling the structure and dynamics of the human DNAJB6b chaperone by NMR reveals insights into Hsp40-mediated proteostasis. Proc.Natl.Acad.Sci.USA, 116, 2019
5K8B	X-ray structure of KdnA, 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase, from Shewanella oneidensis in the presence of the external aldimine with PLP and glutamate 分子名称: 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase, CHLORIDE ION, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-GLUTAMIC ACID, ... 著者 Holden, H.M, Thoden, J.B, Zachman-Brockmeyer, T.R. 登録日 2016-05-28 公開日 2016-06-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structures of KdnB and KdnA from Shewanella oneidensis: Key Enzymes in the Formation of 8-Amino-3,8-Dideoxy-d-Manno-Octulosonic Acid. Biochemistry, 55, 2016
7QIL	Solution NMR structure of halophilic DnaE intein 分子名称: DnaE intein 著者 Heikkinen, H.A, Aranko, S.A, Iwai, H. 登録日 2021-12-15 公開日 2022-04-27 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The NMR structure of the engineered halophilic DnaE intein for segmental isotopic labeling using conditional protein splicing. J.Magn.Reson., 338, 2022
6WJF	PKA RIIbeta holoenzyme with DnaJB1-PKAc fusion in fibrolamellar hepatoceullar carcinoma 分子名称: DnaJ homolog subfamily B member 1,cAMP-dependent protein kinase catalytic subunit alpha fusion, cAMP-dependent protein kinase type II-beta regulatory subunit 著者 Lu, T.-W, Aoto, P.C, Weng, J.-H, Nielsen, C, Cash, J.N, Hall, J, Zhang, P, Simon, S.M, Cianfrocco, M.A, Taylor, S.S. 登録日 2020-04-13 公開日 2020-12-02 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (7.5 Å) 主引用文献 Structural analyses of the PKA RII beta holoenzyme containing the oncogenic DnaJB1-PKAc fusion protein reveal protomer asymmetry and fusion-induced allosteric perturbations in fibrolamellar hepatocellular carcinoma. Plos Biol., 18, 2020
6WJG	PKA RIIbeta holoenzyme with DnaJB1-PKAc fusion in fibrolamellar hepatoceullar carcinoma 分子名称: DnaJ homolog subfamily B member 1, cAMP-dependent protein kinase catalytic subunit alpha fusion, cAMP-dependent protein kinase type II-beta regulatory subunit 著者 Lu, T.-W, Aoto, P.C, Weng, J.-H, Nielsen, C, Cash, J.N, Hall, J, Zhang, P, Simon, S.M, Cianfrocco, M.A, Taylor, S.S. 登録日 2020-04-13 公開日 2020-12-02 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (6.2 Å) 主引用文献 Structural analyses of the PKA RII beta holoenzyme containing the oncogenic DnaJB1-PKAc fusion protein reveal protomer asymmetry and fusion-induced allosteric perturbations in fibrolamellar hepatocellular carcinoma. Plos Biol., 18, 2020
4EZU	Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group I222 分子名称: Chaperone protein DnaK, Proline rich bombesin-related protein 著者 Zahn, M, Straeter, N. 登録日 2012-05-03 公開日 2013-04-24 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural studies of DnaK in complex with proline rich antimicrobial peptides reveal two different peptide binding modes To be Published
4EZS	Crystal structure of the substrate binding domain of E.coli DnaK in complex with metchnikowin (residues 20 to 26) 分子名称: Chaperone protein DnaK, Metchnikowin, SULFATE ION 著者 Zahn, M, Straeter, N. 登録日 2012-05-03 公開日 2013-04-24 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural studies of DnaK in complex with proline rich antimicrobial peptides reveal two different peptide binding modes To be Published
4EZV	Crystal structure of the substrate binding domain of E.coli DnaK in complex with PR-bombesin in space group P21212 分子名称: Chaperone protein DnaK, Proline rich bombesin-related protein 著者 Zahn, M, Straeter, N. 登録日 2012-05-03 公開日 2013-04-24 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural studies of DnaK in complex with proline rich antimicrobial peptides reveal two different peptide binding modes To be Published
7JSQ	Refined structure of the C-terminal domain of DNAJB6b 分子名称: DnaJ homolog subfamily B member 6 著者 Karamanos, T.K, Clore, G.M. 登録日 2020-08-15 公開日 2020-12-02 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 An S/T motif controls reversible oligomerization of the Hsp40 chaperone DNAJB6b through subtle reorganization of a beta sheet backbone. Proc.Natl.Acad.Sci.USA, 117, 2020
2GSJ	cDNA cloning and 1.75A crystal structure determination of PPL2, a novel chimerolectin from Parkia platycephala seeds exhibiting endochitinolytic activity 分子名称: SULFATE ION, protein PPL-2 著者 Cavada, B.S, Moreno, F.B, da Rocha, B.A, de Azevedo Jr, W.F, Castellon, R.E.R, Goersch, G.V, Nagano, C.S, de Souza, E.P, Nascimento, K.S, Radis-Baptista, G, Delatorre, P, Leroy, Y, Toyama, M.H, Pinto, V.P, Sampaio, A.H, Barettino, D, Debray, H, Calvete, J.J, Sanz, L. 登録日 2006-04-26 公開日 2007-03-13 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 cDNA cloning and 1.75 A crystal structure determination of PPL2, an endochitinase and N-acetylglucosamine-binding hemagglutinin from Parkia platycephala seeds Febs J., 273, 2006

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