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5C4J
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G.
登録日2015-06-18
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
Mol.Cell, 59, 2015
7Q5B
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Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene
分子名称: DNA (19-MER), DNA (31-MER), DNA (34-MER), ...
著者Abascal-Palacios, G, Jochem, L, Pla-Prats, C, Beuron, F, Vannini, A.
登録日2021-11-03
公開日2022-01-26
実験手法ELECTRON MICROSCOPY (3.98 Å)
主引用文献Structural basis of Ty3 retrotransposon integration at RNA Polymerase III-transcribed genes.
Nat Commun, 12, 2021
1EF4
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BU of 1ef4 by Molmil
SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM
分子名称: DNA-DIRECTED RNA POLYMERASE, ZINC ION
著者Mackereth, C.D, Arrowsmith, C.H, Edwards, A.M, Mcintosh, L.P, Northeast Structural Genomics Consortium (NESG)
登録日2000-02-07
公開日2000-06-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum.
Proc.Natl.Acad.Sci.USA, 97, 2000
8RBX
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Structure of Integrator-PP2A bound to a paused RNA polymerase II-DSIF-NELF-nucleosome complex
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ...
著者Fianu, I, Ochmann, M, Walshe, J.L, Cramer, P.
登録日2023-12-05
公開日2024-02-07
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structural basis of Integrator-dependent RNA polymerase II termination.
Nature, 629, 2024
8A43
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Human RNA polymerase I
分子名称: DNA-directed RNA polymerase I subunit RPA1, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA2, ...
著者Daiss, J.L, Pilsl, M, Straub, K, Bleckmann, A, Hoecherl, M, Heiss, F.B, Abascal-Palacios, G, Ramsay, E, Tluckova, K, Mars, J.C, Fuertges, T, Bruckmann, A, Rudack, T, Bernecky, C, Lamour, V, Panov, K, Vannini, A, Moss, T, Engel, C.
登録日2022-06-10
公開日2022-08-31
最終更新日2022-11-02
実験手法ELECTRON MICROSCOPY (4.09 Å)
主引用文献The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans.
Life Sci Alliance, 5, 2022
7NVR
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Human Mediator with RNA Polymerase II Pre-initiation complex
分子名称: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
著者Rengachari, S, Schilbach, S, Aibara, S, Cramer, P.
登録日2021-03-15
公開日2021-05-05
最終更新日2021-06-16
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Structures of mammalian RNA polymerase II pre-initiation complexes.
Nature, 594, 2021
4BBS
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BU of 4bbs by Molmil
Structure of an initially transcribing RNA polymerase II-TFIIB complex
分子名称: 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3', 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3', 5'-R(*AP*UP*AP*UP*CP*AP)-3', ...
著者Sainsbury, S, Niesser, J, Cramer, P.
登録日2012-09-27
公開日2012-11-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex
Nature, 493, 2013
4BBR
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Structure of RNA polymerase II-TFIIB complex
分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
著者Sainsbury, S, Niesser, J, Cramer, P.
登録日2012-09-27
公開日2012-11-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex
Nature, 493, 2013
6TPS
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early intermediate RNA Polymerase I Pre-initiation complex - eiPIC
分子名称: DNA foreign, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, ...
著者Pilsl, M, Engel, C.
登録日2019-12-14
公開日2020-03-18
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Structural basis of RNA polymerase I pre-initiation complex formation and promoter melting.
Nat Commun, 11, 2020
4BY7
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elongating RNA Polymerase II-Bye1 TLD complex
分子名称: , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3', 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P.
登録日2013-07-18
公開日2013-09-11
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue.
Proc. Natl. Acad. Sci. U.S.A., 110, 2013
4BY1
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elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP
分子名称: 5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3', ...
著者Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P.
登録日2013-07-17
公開日2013-09-11
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue
Proc.Natl.Acad.Sci.USA, 110, 2013
4BXX
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Arrested RNA polymerase II-Bye1 complex
分子名称: 5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*AP*CP*CP*TP*GP *GP*TP*GP* BRUP*TP*GP*CP*TP*CP*TP*AP*AP*DC)-3', 5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP)-3', 5'-D(*GP*AP*GP*GP*TP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3', ...
著者Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P.
登録日2013-07-16
公開日2013-09-11
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.28 Å)
主引用文献Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue
Proc.Natl.Acad.Sci.USA, 110, 2013
2B8K
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12-subunit RNA Polymerase II
分子名称: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, ...
著者Meyer, P.A, Ye, P, Zhang, M, Suh, M.H, Fu, J.
登録日2005-10-07
公開日2006-06-20
最終更新日2012-06-13
実験手法X-RAY DIFFRACTION (4.15 Å)
主引用文献Phasing RNA Polymerase II Using Intrinsically Bound Zn Atoms: An Updated Structural Model.
Structure, 14, 2006
1WCM
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BU of 1wcm by Molmil
Complete 12-Subunit RNA Polymerase II at 3.8 Angstrom
分子名称: DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE, ...
著者Armache, K.-J, Mitterweger, S, Meinhart, A, Cramer, P.
登録日2004-11-17
公開日2004-12-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Structures of Complete RNA Polymerase II and its Subcomplex,Rpb4/7
J.Biol.Chem., 280, 2005
1NIK
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Wild Type RNA Polymerase II
分子名称: DNA-directed RNA polymerase I, II and III 23 kDa polypeptide, DNA-directed RNA polymerase II, ...
著者Bushnell, D.A, Kornberg, R.D.
登録日2002-12-24
公開日2003-04-29
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (4.1 Å)
主引用文献Complete, 12-subunit RNA Polymerase II at 4.1-A resolution: implications for the initiation of transcription.
Proc.Natl.Acad.Sci.USA, 100, 2003
1Y77
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Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP
分子名称: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ...
著者Kettenberger, H, Armache, K.-J, Cramer, P.
登録日2004-12-08
公開日2005-01-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS
Mol.Cell, 16, 2004
1Y1W
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Complete RNA Polymerase II elongation complex
分子名称: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ...
著者Cramer, P, Kettenberger, H, Armache, K.-J.
登録日2004-11-19
公開日2005-01-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS
Mol.Cell, 16, 2004
1Y1V
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BU of 1y1v by Molmil
Refined RNA Polymerase II-TFIIS complex
分子名称: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, ...
著者Kettenberger, H, Armache, K.-J, Cramer, P.
登録日2004-11-19
公開日2004-12-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS.
Mol.Cell, 16, 2004
8HIL
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BU of 8hil by Molmil
A cryo-EM structure of B. oleracea RNA polymerase V at 3.57 Angstrom
分子名称: DNA-dependent RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, DNA-directed RNA polymerase subunit, ...
著者Du, X, Xie, G, Hu, H, Du, J.
登録日2022-11-20
公開日2023-03-22
最終更新日2023-04-05
実験手法ELECTRON MICROSCOPY (3.57 Å)
主引用文献Structure and mechanism of the plant RNA polymerase V.
Science, 379, 2023
8HIM
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A cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 Angstrom
分子名称: DNA (34-MER), DNA-directed RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, ...
著者Hu, H, Xie, G, Du, X, Du, J.
登録日2022-11-21
公開日2023-03-22
最終更新日2023-04-05
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure and mechanism of the plant RNA polymerase V.
Science, 379, 2023
3HOW
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Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridine
分子名称: 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*AP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*U)-3', ...
著者Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P.
登録日2009-06-03
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.
Mol.Cell, 34, 2009
3HOY
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Complete RNA polymerase II elongation complex VI
分子名称: 5'-D(*CP*CP*AP*AP*GP*CP*TP*CP*AP*AP*G*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*TP*AP*CP*TP*AP*GP*TP*AP*CP*TP*GP*CP*C)-3', 5'-D(*CP*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*AP*GP*TP*AP*AP*AP*CP*TP*AP*GP*TP*AP*TP*T*GP*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP*T)-3', 5'-R(*UP*AP*UP*AP*UP*GP*CP*A*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*A)-3', ...
著者Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P.
登録日2009-06-03
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.
Mol.Cell, 34, 2009
3HOX
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Complete RNA polymerase II elongation complex V
分子名称: 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*AP*AP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*U)-3', ...
著者Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P.
登録日2009-06-03
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.
Mol.Cell, 34, 2009
3HOU
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Complete RNA polymerase II elongation complex I with a T-U mismatch
分子名称: 5'-D(*A*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*CP*A*AP*GP*TP*AP*GP*TP*TP*AP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*U*UP*CP*GP*AP*CP*CP*AP*GP*GP*CP*U)-3', ...
著者Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P.
登録日2009-06-03
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.
Mol.Cell, 34, 2009
3HOZ
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Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanine
分子名称: 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*G)-3', ...
著者Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P.
登録日2009-06-03
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.
Mol.Cell, 34, 2009

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