PDB: 2682 件ウェブページステータス検索Chemie searchBIRD

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7PHC	70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-16 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (9.9 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
6VYZ	Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R.H. 登録日 2020-02-27 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (9.9 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6VYY	Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R.H. 登録日 2020-02-27 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (9.9 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6VYX	Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R.H. 登録日 2020-02-27 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (9.9 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
3BBX	The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex 分子名称: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Jiang, L, Abrahams, J.P. 登録日 2007-11-11 公開日 2008-10-21 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15. J.Mol.Biol., 386, 2009
6VZ2	Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R.H. 登録日 2020-02-27 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
3J46	Structure of the SecY protein translocation channel in action 分子名称: 23S ribosomal RNA, 50S ribosomal protein L1, 50S ribosomal protein L23P, ... 著者 Akey, C.W, Park, E, Menetret, J.F, Gumbart, J.C, Ludtke, S.J, Li, W, Whynot, A, Rapoport, T.A. 登録日 2013-06-18 公開日 2013-10-23 最終更新日 2019-07-03 実験手法 ELECTRON MICROSCOPY (10.1 Å) 主引用文献 Structure of the SecY channel during initiation of protein translocation. Nature, 506, 2013
3J3W	Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a) 分子名称: 50S ribosomal protein L1, 50S ribosomal protein L11, 50S ribosomal protein L13, ... 著者 Li, N, Guo, Q, Zhang, Y, Yuan, Y, Ma, C, Lei, J, Gao, N. 登録日 2013-04-28 公開日 2013-06-12 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (10.7 Å) 主引用文献 Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit Nucleic Acids Res., 41, 2013
8P5D	Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging 分子名称: 40S Ribosomal protein S19, 40S ribosomal protein S0, 40S ribosomal protein S10, ... 著者 Gil Diez, P, McLaren, M, Isupov, M.N, Daum, B, Conners, R, Williams, B. 登録日 2023-05-23 公開日 2023-06-21 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (10.8 Å) 主引用文献 CryoEM reveals that ribosomes in microsporidian spores are locked in a dimeric hibernating state. Nat Microbiol, 8, 2023
1EG0	FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME 分子名称: FORMYL-METHIONYL-TRNA, FRAGMENT OF 16S RRNA HELIX 23, FRAGMENT OF 23S RRNA, ... 著者 Gabashvili, I.S, Agrawal, R.K, Spahn, C.M.T, Grassucci, R.A, Svergun, D.I, Frank, J, Penczek, P. 登録日 2000-02-11 公開日 2000-03-06 最終更新日 2024-02-07 実験手法 ELECTRON MICROSCOPY (11.5 Å) 主引用文献 Solution structure of the E. coli 70S ribosome at 11.5 A resolution. Cell(Cambridge,Mass.), 100, 2000
4V6Q	Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-12-08 公開日 2014-07-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (11.5 Å) 主引用文献 Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
4V6R	Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-12-08 公開日 2014-07-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (11.5 Å) 主引用文献 Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
4V4B	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. 分子名称: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S11, ... 著者 Spahn, C.M, Gomez-Lorenzo, M.G, Grassucci, R.A, Jorgensen, R, Andersen, G.R, Beckmann, R, Penczek, P.A, Ballesta, J.P.G, Frank, J. 登録日 2004-01-06 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (11.7 Å) 主引用文献 Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation. Embo J., 23, 2004
4V75	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (12 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V6Y	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (12 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V6Z	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (12 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V6N	Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-12-07 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (12.1 Å) 主引用文献 Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
7PIR	70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-23 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (12.1 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
4V72	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (13 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V6S	Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-12-09 公開日 2014-07-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (13.1 Å) 主引用文献 Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
4V6L	Structural insights into cognate vs. near-cognate discrimination during decoding. 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Agirrezabala, X, Schreiner, E, Trabuco, L.G, Lei, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-01-07 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (13.2 Å) 主引用文献 Structural insights into cognate versus near-cognate discrimination during decoding. Embo J., 30, 2011
3J3V	Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a) 分子名称: 50S ribosomal protein L1, 50S ribosomal protein L11, 50S ribosomal protein L13, ... 著者 Li, N, Guo, Q, Zhang, Y, Yuan, Y, Ma, C, Lei, J, Gao, N. 登録日 2013-04-28 公開日 2013-06-12 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (13.3 Å) 主引用文献 Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit Nucleic Acids Res., 41, 2013
4V6P	Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-12-08 公開日 2014-07-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (13.5 Å) 主引用文献 Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
7PIA	70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-19 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (13.6 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
5MG3	EM fitted model of bacterial holo-translocon 分子名称: Membrane protein insertase YidC, Protein translocase subunit SecD, Protein translocase subunit SecE, ... 著者 Schaffitzel, C, Botte, M. 登録日 2016-11-20 公開日 2016-12-28 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (14 Å) 主引用文献 A central cavity within the holo-translocon suggests a mechanism for membrane protein insertion. Sci Rep, 6, 2016

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