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PDB: 1515 件

2KDI
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Solution structure of a Ubiquitin/UIM fusion protein
分子名称: Ubiquitin, Vacuolar protein sorting-associated protein 27 fusion protein
著者Sgourakis, N.G, Patel, M.M, Garcia, A.E, Makhatadze, G.I, McCallum, S.A.
登録日2009-01-09
公開日2010-02-09
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Conformational Dynamics and Structural Plasticity Play Critical Roles in the Ubiquitin Recognition of a UIM Domain.
J.Mol.Biol., 396, 2010
2KX0
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the solution structure of UBB+1, frameshift mutant of ubiquitin B
分子名称: ubiquitin B
著者Ko, S.
登録日2010-04-22
公開日2010-09-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献the solution structure of UBB+1, frameshift mutant of ubiquitin B
To be Published
2KLG
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PERE NMR structure of ubiquitin
分子名称: Ubiquitin
著者Madl, T, Bermel, W, Zangger, K.
登録日2009-07-02
公開日2009-10-06
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Use of Relaxation Enhancements in a Paramagnetic Environment for the Structure Determination of Proteins Using NMR Spectroscopy
Angew.Chem.Int.Ed.Engl., 48, 2009
2KN5
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A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family
分子名称: Ubiquitin
著者Friedland, G.D.
登録日2009-08-14
公開日2009-11-17
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family.
PLOS COMPUT.BIOL., 5, 2009
2KOX
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NMR residual dipolar couplings identify long range correlated motions in the backbone of the protein ubiquitin
分子名称: Ubiquitin
著者Fenwick, R.B, Richter, B, Lee, D, Walter, K.F.A, Milovanovic, D, Becker, S, Lakomek, N.A, Griesinger, C, Salvatella, X.
登録日2009-10-02
公開日2011-06-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Weak Long-Range Correlated Motions in a Surface Patch of Ubiquitin Involved in Molecular Recognition
J.Am.Chem.Soc., 2011
2LXA
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BU of 2lxa by Molmil
Solution structure of the Get5 ubiquitin-like domain
分子名称: Ubiquitin-like protein MDY2
著者Chartron, J.W, Vandervelde, D.G, Clemons Jr, W.M.
登録日2012-08-19
公開日2012-11-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structures of the Sgt2/SGTA Dimerization Domain with the Get5/UBL4A UBL Domain Reveal an Interaction that Forms a Conserved Dynamic Interface.
Cell Rep, 2, 2012
2MBQ
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K11-linked Diubiquitin average solution structure at pH 6.8, 150 mM NaCl
分子名称: Ubiquitin
著者Castaneda, C.A, Fushman, D.
登録日2013-08-03
公開日2013-09-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains.
Structure, 21, 2013
2MBO
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K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl
分子名称: Ubiquitin
著者Castaneda, C.A, Fushman, D.
登録日2013-08-02
公開日2013-09-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains.
Structure, 21, 2013
2MJB
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BU of 2mjb by Molmil
Solution nmr structure of ubiquitin refined against dipolar couplings in 4 media
分子名称: Ubiquitin-60S ribosomal protein L40
著者Maltsev, A, Grishaev, A, Roche, J, Zasloff, M, Bax, A.
登録日2014-01-02
公開日2014-03-26
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Improved cross validation of a static ubiquitin structure derived from high precision residual dipolar couplings measured in a drug-based liquid crystalline phase.
J.Am.Chem.Soc., 136, 2014
2OOB
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crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin
分子名称: E3 ubiquitin-protein ligase CBL-B, Ubiquitin
著者Kozlov, G, Gehring, K.
登録日2007-01-25
公開日2007-02-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b.
Mol.Cell, 27, 2007
2KDB
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Solution Structure of human ubiquitin-like domain of Herpud2_9_85, Northeast Structural Genomics Consortium (NESG) target HT53A
分子名称: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein
著者Wu, B, Yee, A, Fares, C, Lemak, A, Gutmanas, A, Doherty, R, Semesi, A, Dhe-Paganon, S, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC)
登録日2009-01-06
公開日2009-02-10
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of human homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 2 (Herpud2 or Herp)
To be Published
2KK8
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NMR Solution Structure of a Putative Uncharacterized Protein obtained from Arabidopsis thaliana: Northeast Structural Genomics Consortium target AR3449A
分子名称: Uncharacterized protein AT4g05270
著者Mani, R, Gurla, S.V.T, Shastry, R, Ciccosanti, C, Foote, E, Jiang, M, Xiao, R, Nair, R, Everett, J, Huang, Y, Acton, T, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2009-06-16
公開日2009-06-30
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献NMR Solution Structure of a Putative Uncharacterized Protein obtained from Arabidopsis thaliana: Northeast Structural Genomics Consortium Target AR3449A
To be Published
2PE9
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BU of 2pe9 by Molmil
NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements
分子名称: Ubiquitin
著者Ryabov, Y, Fushman, D.
登録日2007-04-02
公開日2007-07-10
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor.
J.Am.Chem.Soc., 129, 2007
2L7R
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BU of 2l7r by Molmil
Solution NMR structure of N-terminal Ubiquitin-like domain of FUBI, a ribosomal protein S30 precursor from Homo sapiens. NorthEast Structural Genomics consortium (NESG) target HR6166
分子名称: Ubiquitin-like protein FUBI
著者Lemak, A, Yee, A, Houliston, S, Semesi, A, Doherty, R, Dhe-Paganon, S, Montelione, G.T, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC)
登録日2010-12-20
公開日2011-01-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR structure of N-terminal Ubiquitin-like domain of FUBI, a ribosomal protein S30 precursor from Homo sapiens. NorthEast Structural Genomics consortium (NESG) target HR6166
To be Published
2LGD
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BU of 2lgd by Molmil
The high resolution structure of ubiquitin like domain of UBLCP1
分子名称: Ubiquitin-like domain-containing CTD phosphatase 1
著者Lee, W, Ko, S.
登録日2011-07-25
公開日2012-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The High Resolution Structure of Ubiquitin Like Dom Ublcp1
To be Published
2PEA
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BU of 2pea by Molmil
NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements
分子名称: Ubiquitin
著者Ryabov, Y, Fushman, D.
登録日2007-04-02
公開日2007-07-10
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor.
J.Am.Chem.Soc., 129, 2007
3TBL
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BU of 3tbl by Molmil
Structure of Mono-ubiquitinated PCNA: Implications for DNA Polymerase Switching and Okazaki Fragment Maturation
分子名称: Proliferating cell nuclear antigen, Ubiquitin
著者Zhang, Z, Lee, M, Lee, E, Zhang, S.
登録日2011-08-07
公開日2012-05-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.903 Å)
主引用文献Structure of monoubiquitinated PCNA: Implications for DNA polymerase switching and Okazaki fragment maturation.
Cell Cycle, 11, 2012
4W9C
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BU of 4w9c by Molmil
pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(oxazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 2)
分子名称: (4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-[4-(1,3-oxazol-5-yl)benzyl]-L-prolinamide, Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2, ...
著者Gadd, M.S, Hewitt, S, Galdeano, C, van Molle, I, Ciulli, A.
登録日2014-08-27
公開日2014-09-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure-Guided Design and Optimization of Small Molecules Targeting the Protein-Protein Interaction between the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase and the Hypoxia Inducible Factor (HIF) Alpha Subunit with in Vitro Nanomolar Affinities.
J.Med.Chem., 57, 2014
4NQK
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BU of 4nqk by Molmil
Structure of an Ubiquitin complex
分子名称: Probable ATP-dependent RNA helicase DDX58, Ubiquitin
著者Peisley, A, Wu, B, Hur, S.
登録日2013-11-25
公開日2014-03-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Structural basis for ubiquitin-mediated antiviral signal activation by RIG-I.
Nature, 509, 2014
4NNJ
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BU of 4nnj by Molmil
Crystal structure of Uba1 in complex with ubiquitin-AMP and thioesterified ubiquitin
分子名称: ADENOSINE MONOPHOSPHATE, GLYCEROL, SULFATE ION, ...
著者Schaefer, A, Schindelin, H.
登録日2013-11-18
公開日2014-05-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the ubiquitin-activating enzyme loaded with two ubiquitin molecules.
Acta Crystallogr.,Sect.D, 70, 2014
2DX5
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BU of 2dx5 by Molmil
The complex structure between the mouse EAP45-GLUE domain and ubiquitin
分子名称: Ubiquitin, Vacuolar protein sorting protein 36
著者Hirano, S, Suzuki, N, Slagsvold, T, Kawasaki, M, Trambaiolo, D, Kato, R, Stenmark, H, Wakatsuki, S.
登録日2006-08-24
公開日2006-10-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Structural basis of ubiquitin recognition by mammalian Eap45 GLUE domain
Nat.Struct.Mol.Biol., 13, 2006
5HPK
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BU of 5hpk by Molmil
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: NEDD4L and UbV NL.1
分子名称: E3 ubiquitin-protein ligase NEDD4-like, Ubiquitin variant NL.1
著者Wu, K.-P, Mukherjee, M, Mercredi, P.Y, Schulman, B.A.
登録日2016-01-20
公開日2016-03-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.431 Å)
主引用文献System-Wide Modulation of HECT E3 Ligases with Selective Ubiquitin Variant Probes.
Mol.Cell, 62, 2016
5HPL
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System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: Rsp5 and UbV R5.4
分子名称: Rsp5, Ubiquitin variant R5.4
著者Wu, K.-P, Kamadurai, H.B, Schulman, B.A.
登録日2016-01-20
公開日2016-03-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献System-Wide Modulation of HECT E3 Ligases with Selective Ubiquitin Variant Probes.
Mol.Cell, 62, 2016
6EI1
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BU of 6ei1 by Molmil
Crystal structure of the covalent complex between deubiquitinase ZUFSP (ZUP1) and Ubiquitin-PA
分子名称: GLYCEROL, MALONATE ION, Polyubiquitin-B, ...
著者Pichlo, C, Baumann, U, Hofmann, K, Hermanns, T.
登録日2017-09-16
公開日2018-03-07
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (1.732 Å)
主引用文献A family of unconventional deubiquitinases with modular chain specificity determinants.
Nat Commun, 9, 2018
7RBS
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BU of 7rbs by Molmil
The crystal structure of Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with human ISG15
分子名称: Papain-like protease, Ubiquitin-like protein ISG15, ZINC ION
著者Osipiuk, J, Tesar, C, Jedrzejczak, R, Endres, M, Wydorski, P, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2021-07-06
公開日2021-09-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.
Nat Commun, 14, 2023

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