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PDB: 338 件
1UBI
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BU of 1ubi by Molmil
SYNTHETIC STRUCTURAL AND BIOLOGICAL STUDIES OF THE UBIQUITIN SYSTEM. PART 1
分子名称: UBIQUITIN
著者Alexeev, D, Bury, S.M, Turner, M.A, Ogunjobi, O.M, Muir, T.W, Ramage, R, Sawyer, L.
登録日1994-02-03
公開日1994-05-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Synthetic, structural and biological studies of the ubiquitin system: the total chemical synthesis of ubiquitin.
Biochem.J., 299, 1994
1UBQ
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BU of 1ubq by Molmil
STRUCTURE OF UBIQUITIN REFINED AT 1.8 ANGSTROMS RESOLUTION
分子名称: UBIQUITIN
著者Vijay-Kumar, S, Bugg, C.E, Cook, W.J.
登録日1987-01-02
公開日1987-04-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of ubiquitin refined at 1.8 A resolution.
J.Mol.Biol., 194, 1987
5GO7
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BU of 5go7 by Molmil
Linear tri-ubiquitin
分子名称: D-ubiquitin, Ubiquitin
著者Gao, S, Pan, M, Zheng, Y.
登録日2016-07-26
公開日2016-11-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献Monomer/Oligomer Quasi-Racemic Protein Crystallography
J.Am.Chem.Soc., 138, 2016
3EHV
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BU of 3ehv by Molmil
X-ray structure of human ubiquitin Zn(II) adduct
分子名称: Ubiquitin, ZINC ION
著者Falini, G, Fermani, S, Tosi, G.
登録日2008-09-15
公開日2009-03-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structural probing of Zn(II), Cd(II) and Hg(II) binding to human ubiquitin.
Chem.Commun.(Camb.), 45, 2008
5X3M
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BU of 5x3m by Molmil
crystal structure of p-Ub-S65-NH2
分子名称: D-ubiquitin, Polyubiquitin-B
著者Man, P, Shuai, G, Qian, Q, Lei, L.
登録日2017-02-06
公開日2017-04-05
最終更新日2022-02-09
実験手法X-RAY DIFFRACTION (1.818 Å)
主引用文献Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution
To Be Published
7AHZ
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BU of 7ahz by Molmil
Crystal structure of Western clawed frog MDM2 RING domain homodimer bound to UbcH5B-Ub
分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2, Polyubiquitin-B, ...
著者Magnussen, H.M, Huang, D.T.
登録日2020-09-25
公開日2021-01-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Identification of a Catalytic Active but Non-Aggregating MDM2 RING Domain Variant.
J.Mol.Biol., 433, 2021
5GOK
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BU of 5gok by Molmil
K11/K63-branched tri-Ubiquitin
分子名称: D-ubiquitin, Ubiquitin
著者Gao, S, Pan, M, Zheng, Y, Liu, L.
登録日2016-07-27
公開日2016-11-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Monomer/Oligomer Quasi-Racemic Protein Crystallography
J.Am.Chem.Soc., 138, 2016
3EFU
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BU of 3efu by Molmil
X-ray structure of human ubiquitin-Hg(II) adduct
分子名称: MERCURY (II) ION, Ubiquitin
著者Falini, G, Fermani, S, Tosi, G.
登録日2008-09-10
公開日2008-12-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural probing of Zn(ii), Cd(ii) and Hg(ii) binding to human ubiquitin.
Chem.Commun.(Camb.), 45, 2008
5TXK
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BU of 5txk by Molmil
CRYSTAL STRUCTURE OF USP35 C450S IN COMPLEX WITH UBIQUITIN
分子名称: 1,2-ETHANEDIOL, Polyubiquitin-B, SULFATE ION, ...
著者Bader, G, Weiss-Puxbaum, A, Zoephel, A.
登録日2016-11-17
公開日2018-05-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Expansion of DUB functionality generated by alternative isoforms - USP35, a case study.
J. Cell. Sci., 131, 2018
8EFX
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BU of 8efx by Molmil
Structure of OtDUB DUB Domain disulfide crosslinked with Ubiquitin
分子名称: OtDUB, Ubiquitin
著者Negron Teron, K.N, Das, C.
登録日2022-09-09
公開日2023-09-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Cocrystallization of ubiquitin-deubiquitinase complexes through disulfide linkage.
Acta Crystallogr D Struct Biol, 79, 2023
5L8H
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BU of 5l8h by Molmil
Structure of USP46-UbVME
分子名称: Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 46, ZINC ION
著者Clerici, M, Sixma, T, Dharadhar, S.
登録日2016-06-07
公開日2016-09-28
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A conserved two-step binding for the UAF1 regulator to the USP12 deubiquitinating enzyme.
J.Struct.Biol., 196, 2016
8F1F
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BU of 8f1f by Molmil
Structure of K48-linked tri-ubiquitin in complex with cyclic peptide
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Non-proteinogenic cyclic peptide (inhibitor), ...
著者Lubkowski, J, Fushman, D, Lemma, B.
登録日2022-11-05
公開日2023-11-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation.
Nat Commun, 14, 2023
5WFI
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BU of 5wfi by Molmil
X-ray structure of MHV PLP2 (Cys1716Ser) catalytic mutant in complex with free ubiquitin
分子名称: FORMIC ACID, GLYCEROL, Ubiquitin, ...
著者Mesecar, A.D, Chen, Y.
登録日2017-07-12
公開日2018-08-01
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.851 Å)
主引用文献X-ray structure of MHV PLP2 (Cys1716Ser) catalytic mutant in complex with free ubiquitin
To Be Published
8A67
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BU of 8a67 by Molmil
Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with matured synthetic nanobody NbSL3.3Q (3rd generation)
分子名称: CHLORIDE ION, GLYCEROL, ISOPROPYL ALCOHOL, ...
著者Lange, S.M, Kulathu, Y.
登録日2022-06-16
公開日2023-02-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Comprehensive approach to study branched ubiquitin chains reveals roles for K48-K63 branches in VCP/p97-related processes
Biorxiv, 2023
6ISU
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BU of 6isu by Molmil
Crystal structure of Lys27-linked di-ubiquitin in complex with its selective interacting protein UCHL3
分子名称: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase isozyme L3
著者Ding, S, Pan, M, Zheng, Q, Ren, Y, Hong, D.
登録日2018-11-19
公開日2019-02-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.866 Å)
主引用文献Chemical Protein Synthesis Enabled Mechanistic Studies on the Molecular Recognition of K27-linked Ubiquitin Chains.
Angew. Chem. Int. Ed. Engl., 58, 2019
7RBR
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BU of 7rbr by Molmil
The crystal structure of Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with a Lys48-linked di-ubiquitin
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Papain-like protease, ...
著者Osipiuk, J, Tesar, C, Endres, M, Lanham, B.T, Wydorski, P, Fushman, D, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2021-07-06
公開日2021-09-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.
Nat Commun, 14, 2023
3MHS
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BU of 3mhs by Molmil
Structure of the SAGA Ubp8/Sgf11/Sus1/Sgf73 DUB module bound to ubiquitin aldehyde
分子名称: 1,2-ETHANEDIOL, GLYCEROL, Protein SUS1, ...
著者Samara, N.L, Datta, A.B, Berndsen, C.E, Zhang, X, Yao, T, Cohen, R.E, Wolberger, C.
登録日2010-04-08
公開日2010-04-21
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structural insights into the assembly and function of the SAGA deubiquitinating module.
Science, 328, 2010
3H7P
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BU of 3h7p by Molmil
Crystal structure of K63-linked di-ubiquitin
分子名称: CADMIUM ION, Ubiquitin
著者Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
登録日2009-04-28
公開日2009-09-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture.
Proteins, 77, 2009
8BS9
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BU of 8bs9 by Molmil
Structure of USP36 in complex with Ubiquitin-PA
分子名称: Polyubiquitin-B, SODIUM ION, Ubiquitin carboxyl-terminal hydrolase 36, ...
著者O'Dea, R, Gersch, M.
登録日2022-11-24
公開日2023-07-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular basis for ubiquitin/Fubi cross-reactivity in USP16 and USP36.
Nat.Chem.Biol., 19, 2023
5CVM
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BU of 5cvm by Molmil
USP46~ubiquitin BEA covalent complex
分子名称: Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 46, ZINC ION
著者Harris, S.F, Yin, J.
登録日2015-07-27
公開日2015-10-07
最終更新日2015-11-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Insights into WD-Repeat 48 Activation of Ubiquitin-Specific Protease 46.
Structure, 23, 2015
6GZS
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BU of 6gzs by Molmil
Structure of Chlamydia trachomatis effector protein ChlaDUB1 bound to ubiquitin
分子名称: Deubiquitinase and deneddylase Dub1, GLYCEROL, Polyubiquitin-B, ...
著者Pruneda, J.N, Komander, D.
登録日2018-07-05
公開日2018-11-14
最終更新日2018-12-05
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A Chlamydia effector combining deubiquitination and acetylation activities induces Golgi fragmentation.
Nat Microbiol, 3, 2018
4WZP
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BU of 4wzp by Molmil
Ser65 phosphorylated ubiquitin, major conformation
分子名称: SULFATE ION, ubiquitin
著者Wauer, T, Wagstaff, J, Freund, S.M.V, Komander, D.
登録日2014-11-20
公開日2015-01-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis.
Embo J., 34, 2015
5D0M
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BU of 5d0m by Molmil
Structure of UbE2D2:RNF165:Ub complex
分子名称: PHOSPHATE ION, Polyubiquitin-B, RING finger protein 165, ...
著者Wright, J.D, Day, C.L, Mace, P.D.
登録日2015-08-03
公開日2015-12-09
最終更新日2016-01-20
実験手法X-RAY DIFFRACTION (1.913 Å)
主引用文献Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity.
Nat.Struct.Mol.Biol., 23, 2016
5GOH
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BU of 5goh by Molmil
Lys33-linked di-ubiquitin
分子名称: D-ubiquitin, Ubiquitin
著者Gao, S, Pan, M, Zheng, Y, Liu, L.
登録日2016-07-27
公開日2016-11-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.946 Å)
主引用文献Monomer/Oligomer Quasi-Racemic Protein Crystallography
J.Am.Chem.Soc., 138, 2016
5ULH
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BU of 5ulh by Molmil
Structure of RNF165 in complex with a UbcH5b~Ub conjugate
分子名称: E3 ubiquitin-protein ligase RNF165, GLYCEROL, THIOCYANATE ION, ...
著者Middleton, A.J, Day, C.L, Wright, J.D.
登録日2017-01-24
公開日2017-06-07
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Discovery of new non-covalent ubiquitin binding sites on UbcH5
To be published

221716

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