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PDB: 338 件
3BY4
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BU of 3by4 by Molmil
Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin
分子名称: 3-AMINOPROPANE, Ubiquitin, Ubiquitin thioesterase OTU1
著者Messick, T.E, Marmorstein, R.
登録日2008-01-15
公開日2008-02-19
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein
J.Biol.Chem., 283, 2008
5J8P
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BU of 5j8p by Molmil
Lys27-linked diubiquitin
分子名称: D-ubiquitin, MAGNESIUM ION, ubiquitin
著者Pan, M, Gao, S, Zheng, Y.
登録日2016-04-08
公開日2016-05-18
最終更新日2022-02-09
実験手法X-RAY DIFFRACTION (1.554 Å)
主引用文献Structure of Lys27-linked diubiquitin
To Be Published
7AI0
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BU of 7ai0 by Molmil
Crystal structure of human MDM2-G443T RING domain homodimer bound to UbcH5B-Ub (Crystal form 1)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2, ...
著者Magnussen, H.M, Huang, D.T.
登録日2020-09-25
公開日2021-01-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.559 Å)
主引用文献Identification of a Catalytic Active but Non-Aggregating MDM2 RING Domain Variant.
J.Mol.Biol., 433, 2021
5O6T
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BU of 5o6t by Molmil
BIRC4 RING in complex with dimeric ubiquitin variant
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase XIAP, Polyubiquitin-B, ...
著者Gabrielsen, M, Buetow, L, Huang, D.T.
登録日2017-06-07
公開日2017-11-01
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献A General Strategy for Discovery of Inhibitors and Activators of RING and U-box E3 Ligases with Ubiquitin Variants.
Mol. Cell, 68, 2017
5GOI
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BU of 5goi by Molmil
Lys48-linked di-ubiquitin
分子名称: D-ubiquitin, Ubiquitin
著者Gao, S, Pan, M, Zheng, Y, Liu, L.
登録日2016-07-27
公開日2016-11-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.594 Å)
主引用文献Monomer/Oligomer Quasi-Racemic Protein Crystallography
J.Am.Chem.Soc., 138, 2016
2ZCB
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BU of 2zcb by Molmil
Crystal Structure of ubiquitin P37A/P38A
分子名称: Ubiquitin, ZINC ION
著者Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S.
登録日2007-11-08
公開日2007-11-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of ubiquitin P37A/P38A
To be published
2GBN
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BU of 2gbn by Molmil
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin
分子名称: Ubiquitin
著者Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
登録日2006-03-10
公開日2006-05-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
6FDK
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BU of 6fdk by Molmil
Structure of Chlamydia trachomatis effector protein Cdu1 bound to ubiquitin
分子名称: CHLORIDE ION, Deubiquitinase and deneddylase Dub1, Polyubiquitin-B, ...
著者Ramirez, Y, Kisker, C.
登録日2017-12-25
公開日2018-08-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Basis of Substrate Recognition and Covalent Inhibition of Cdu1 from Chlamydia trachomatis.
ChemMedChem, 13, 2018
5KYD
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BU of 5kyd by Molmil
Crystal structure of USP7 catalytic domain [V302K] mutant in complex with ubiquitin
分子名称: Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 7
著者Rouge, L, Ozen, A.
登録日2016-07-21
公開日2017-08-09
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Selectively Modulating Conformational States of USP7 Catalytic Domain for Activation.
Structure, 26, 2018
8Q00
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BU of 8q00 by Molmil
TssM-Ub-PA complex - A USP-like DUB from B. pseudomallei (193-430) reacted with Ub-PA
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, Polyubiquitin-B, ...
著者Uthoff, M, Hermanns, T, Hofmann, K, Baumann, U.
登録日2023-07-27
公開日2023-12-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献The structural basis for deubiquitination by the fingerless USP-type effector TssM.
Life Sci Alliance, 7, 2024
6HEI
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BU of 6hei by Molmil
Structure of the catalytic domain of USP28 (insertion deleted) bound to Ubiquitin-PA
分子名称: 1,2-ETHANEDIOL, Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 28,Ubiquitin carboxyl-terminal hydrolase 28
著者Gersch, M, Komander, D.
登録日2018-08-20
公開日2019-03-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Distinct USP25 and USP28 Oligomerization States Regulate Deubiquitinating Activity.
Mol.Cell, 74, 2019
5X3N
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BU of 5x3n by Molmil
Crystal structure of DiUb-K6
分子名称: PHOSPHATE ION, Polyubiquitin-B
著者Man, P, Shuai, G, Qian, Q, Lei, L.
登録日2017-02-06
公開日2017-04-12
実験手法X-RAY DIFFRACTION (1.649 Å)
主引用文献Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution.
To Be Published
5EMZ
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BU of 5emz by Molmil
Crystal structure of K48-linked diubiquitin with F45W mutation in the proximal unit
分子名称: Polyubiquitin-B, SULFATE ION
著者Nakasone, M.A, Paukstelis, P.J, Fushman, D.
登録日2015-11-07
公開日2016-11-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structural characterization and practical fluorescence applications of the F45W ubiquitin mutant
To Be Published
6HPR
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BU of 6hpr by Molmil
Crystal structure of cIAP1 RING domain bound to UbcH5B-Ub and a non-covalent Ub
分子名称: Baculoviral IAP repeat-containing protein 2, Polyubiquitin-B, Ubiquitin-conjugating enzyme E2 D2, ...
著者Patel, A, Huang, D.T.
登録日2018-09-21
公開日2018-12-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural insights into non-covalent ubiquitin activation of the cIAP1-UbcH5B∼ubiquitin complex.
J. Biol. Chem., 294, 2019
3NS8
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BU of 3ns8 by Molmil
Crystal structure of an open conformation of Lys48-linked diubiquitin at pH 7.5
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Ubiquitin
著者Zhang, D, LaRonde-LeBlanc, N, Fushman, D.
登録日2010-07-01
公開日2011-07-20
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.707 Å)
主引用文献Structural and biochemical studies of the open state of Lys48-linked diubiquitin.
Biochim.Biophys.Acta, 1823, 2012
4ZFR
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BU of 4zfr by Molmil
Catalytic domain of Sst2 F403A mutant bound to ubiquitin
分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, ZINC ION, ...
著者Shrestha, R.K.
登録日2015-04-21
公開日2015-10-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Structure of Catalytic domain of Sst2 F403A mutant bound to ubiquitin at 1.7 Angstroms
To Be Published
6EI1
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BU of 6ei1 by Molmil
Crystal structure of the covalent complex between deubiquitinase ZUFSP (ZUP1) and Ubiquitin-PA
分子名称: GLYCEROL, MALONATE ION, Polyubiquitin-B, ...
著者Pichlo, C, Baumann, U, Hofmann, K, Hermanns, T.
登録日2017-09-16
公開日2018-03-07
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (1.732 Å)
主引用文献A family of unconventional deubiquitinases with modular chain specificity determinants.
Nat Commun, 9, 2018
5GOC
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BU of 5goc by Molmil
Lys11-linked diubiquitin
分子名称: D-ubiquitin, SODIUM ION, Ubiquitin
著者Gao, S, Pan, M, Zheng, Y.
登録日2016-07-26
公開日2016-11-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.733 Å)
主引用文献Monomer/Oligomer Quasi-Racemic Protein Crystallography
J.Am.Chem.Soc., 138, 2016
6FGE
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BU of 6fge by Molmil
Crystal structure of human ZUFSP/ZUP1 in complex with ubiquitin
分子名称: ACETATE ION, AMMONIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Kwasna, D, Abdul Rehman, S.A, Kulathu, Y.
登録日2018-01-10
公開日2018-04-04
最終更新日2018-04-18
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability.
Mol. Cell, 70, 2018
5M93
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BU of 5m93 by Molmil
Crystal structure of SdeA-modified ubiquitin.
分子名称: Polyubiquitin-B, SULFATE ION, alpha-D-ribofuranose
著者Kalayil, S, Bhogaraju, S, Dikic, I.
登録日2016-10-31
公開日2016-12-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.793 Å)
主引用文献Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination.
Cell, 167, 2016
3N32
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BU of 3n32 by Molmil
The crystal structure of human Ubiquitin adduct with Zeise's salt
分子名称: PLATINUM (II) ION, Ubiquitin
著者Siliqi, D, Caliandro, R, Falini, G, Fermani, S, Natile, G, Arnesano, F, Belviso, B.D.
登録日2010-05-19
公開日2011-01-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.795 Å)
主引用文献Crystallographic analysis of metal-ion binding to human ubiquitin.
Chemistry, 17, 2011
6GLC
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BU of 6glc by Molmil
Structure of phospho-Parkin bound to phospho-ubiquitin
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, E3 ubiquitin-protein ligase parkin, GLYCEROL, ...
著者Gladkova, C, Maslen, S.L, Skehel, J.M, Komander, D.
登録日2018-05-23
公開日2018-06-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mechanism of parkin activation by PINK1.
Nature, 559, 2018
2J7Q
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BU of 2j7q by Molmil
Crystal structure of the ubiquitin-specific protease encoded by murine cytomegalovirus tegument protein M48 in complex with a ubquitin-based suicide substrate
分子名称: GLYCEROL, MAGNESIUM ION, MCMV TEGUMENT PROTEIN M48 ENCODED UBIQUITIN- SPECIFIC PROTEASE, ...
著者Schlieker, C, Weihofen, W.A, Frijns, E, Kattenhorn, L.M, Gaudet, R, Ploegh, H.L.
登録日2006-10-16
公開日2007-03-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of a Herpesvirus-Encoded Cysteine Protease Reveals a Unique Class of Deubiquitinating Enzymes
Mol.Cell, 25, 2007
5ULF
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BU of 5ulf by Molmil
Crystal Structure of a UbcH5b~Ub conjugate
分子名称: GLYCEROL, Ubiquitin, Ubiquitin-conjugating enzyme E2 D2
著者Middleton, A.J, Day, C.L, Wright, J.D.
登録日2017-01-24
公開日2017-06-07
最終更新日2017-09-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Discovery of new non-covalent ubiquitin binding sites on UbcH5
To be published
3ONS
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BU of 3ons by Molmil
Crystal structure of Human Ubiquitin in a new crystal form
分子名称: Ubiquitin
著者Amodeo, G.A, Huang, K.Y, Mcdermott, A.E, Tong, L.
登録日2010-08-30
公開日2011-02-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The structure of human ubiquitin in 2-methyl-2,4-pentanediol: a new conformational switch.
Protein Sci., 20, 2011

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